Wall clock time and date at job start Tue Mar 31 2020 18:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47059 * 2 1 4 4 H 1.09001 * 109.47122 * 305.00849 * 3 2 1 5 5 C 1.50693 * 109.47176 * 185.00091 * 3 2 1 6 6 O 1.21275 * 120.00369 * 239.99909 * 5 3 2 7 7 N 1.34782 * 120.00008 * 60.00146 * 5 3 2 8 8 C 1.46497 * 120.00026 * 179.97438 * 7 5 3 9 9 H 1.08997 * 110.68306 * 32.01154 * 8 7 5 10 10 C 1.54853 * 110.62768 * 269.02675 * 8 7 5 11 11 C 1.55848 * 103.44611 * 241.51513 * 10 8 7 12 12 H 1.09005 * 116.13018 * 159.15035 * 11 10 8 13 13 C 1.55847 * 105.06035 * 288.17058 * 11 10 8 14 14 C 1.54853 * 103.44204 * 71.82646 * 13 11 10 15 15 C 1.55840 * 103.45030 * 359.97438 * 14 13 11 16 16 H 1.08994 * 116.13379 * 159.14507 * 15 14 13 17 17 N 1.50239 * 101.05164 * 32.93551 * 11 10 8 18 18 C 1.36934 * 130.83734 * 126.01891 * 17 11 10 19 19 H 1.08004 * 119.99653 * 180.02562 * 18 17 11 20 20 C 1.38810 * 119.99980 * 0.02562 * 18 17 11 21 21 N 1.31622 * 120.00264 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99802 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47249 * 60.00532 * 22 20 18 24 24 H 1.48502 * 109.47226 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47244 * 300.00372 * 22 20 18 26 26 N 1.46499 * 109.47066 * 65.00325 * 3 2 1 27 27 C 1.46764 * 124.35223 * 239.72626 * 26 3 2 28 28 C 1.54659 * 105.38761 * 162.85090 * 27 26 3 29 29 C 1.54634 * 101.68149 * 25.76687 * 28 27 26 30 30 C 1.34424 * 124.35128 * 60.02346 * 26 3 2 31 31 O 1.21284 * 124.93744 * 0.38708 * 30 26 3 32 32 H 1.09002 * 109.47256 * 299.99357 * 1 2 3 33 33 H 1.08995 * 109.47787 * 59.99508 * 1 2 3 34 34 H 1.08999 * 109.47416 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.46559 * 240.00470 * 2 1 3 36 36 H 1.08992 * 109.47343 * 119.99889 * 2 1 3 37 37 H 0.97000 * 119.99463 * 0.02562 * 7 5 3 38 38 H 1.08994 * 110.63069 * 123.02255 * 10 8 7 39 39 H 1.09000 * 110.62636 * 359.97438 * 10 8 7 40 40 H 1.08997 * 110.62560 * 190.31487 * 13 11 10 41 41 H 1.08991 * 110.63025 * 313.33912 * 13 11 10 42 42 H 1.09002 * 110.62748 * 118.49166 * 14 13 11 43 43 H 1.09007 * 110.62507 * 241.50562 * 14 13 11 44 44 H 0.96997 * 119.99544 * 179.97438 * 21 20 18 45 45 H 1.09002 * 110.24873 * 281.98751 * 27 26 3 46 46 H 1.09000 * 110.24405 * 43.98146 * 27 26 3 47 47 H 1.09003 * 111.19216 * 267.59722 * 28 27 26 48 48 H 1.08995 * 110.82291 * 143.77214 * 28 27 26 49 49 H 1.08992 * 110.48595 * 216.31188 * 29 28 27 50 50 H 1.09000 * 110.59439 * 93.71688 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1238 6 8 4.2215 1.9436 0.7476 7 7 4.1296 0.8912 -1.2032 8 6 5.5896 0.8935 -1.3239 9 1 6.0572 0.8289 -0.3414 10 6 6.0729 2.1579 -2.0759 11 6 6.7762 1.5805 -3.3411 12 1 6.8858 2.2637 -4.1834 13 6 8.0981 0.9446 -2.8149 14 6 7.6149 -0.3199 -2.0628 15 6 6.0668 -0.2755 -2.2365 16 1 5.5414 -1.2210 -2.1028 17 7 5.9478 0.3533 -3.5963 18 6 5.2874 -0.0633 -4.7211 19 1 4.7349 -0.9913 -4.7104 20 6 5.3281 0.7070 -5.8752 21 7 6.0019 1.8376 -5.8884 22 14 4.4266 0.1389 -7.4095 23 1 2.9770 0.0125 -7.1136 24 1 4.6257 1.1310 -8.4964 25 1 4.9610 -1.1785 -7.8384 26 7 1.6524 2.0975 1.2518 27 6 0.8123 3.2981 1.3328 28 6 0.3192 3.3560 2.7975 29 6 1.4370 2.5827 3.5349 30 6 2.0254 1.6793 2.4737 31 8 2.7306 0.7173 2.6934 32 1 -0.3634 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8932 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 3.5859 0.4923 -1.9004 38 1 6.7802 2.7204 -1.4665 39 1 5.2262 2.7831 -2.3595 40 1 8.7501 0.6721 -3.6448 41 1 8.6071 1.6257 -2.1330 42 1 8.0272 -1.2195 -2.5198 43 1 7.8843 -0.2657 -1.0080 44 1 6.0306 2.3756 -6.6950 45 1 1.3984 4.1855 1.0939 46 1 -0.0359 3.2114 0.6537 47 1 -0.6418 2.8540 2.9099 48 1 0.2624 4.3869 3.1468 49 1 1.0185 1.9919 4.3497 50 1 2.1936 3.2703 3.9129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111423987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:35 Heat of formation + Delta-G solvation = -24.237258 kcal Electronic energy + Delta-G solvation = -30939.414770 eV Core-core repulsion = 26967.743124 eV Total energy + Delta-G solvation = -3971.671646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.80066 -39.50761 -38.16151 -36.30944 -34.87572 -33.67822 -32.51031 -31.11616 -29.11813 -28.97351 -28.14995 -27.63650 -26.54338 -24.19387 -22.44804 -22.05015 -21.68885 -20.19479 -19.78966 -18.97734 -18.51605 -17.28051 -17.02274 -16.83879 -16.04513 -15.63496 -15.34694 -14.81626 -14.46151 -14.25805 -14.18790 -13.89245 -13.66075 -13.46416 -13.36329 -13.10824 -13.00586 -12.64000 -12.55503 -12.05049 -11.96250 -11.81924 -11.72109 -11.39355 -11.25432 -11.12851 -11.11392 -11.05133 -10.95084 -10.90101 -10.48450 -10.33400 -10.13292 -9.90397 -9.70062 -9.55938 -9.27938 -9.17724 -8.97490 -8.59105 -8.38038 -6.95390 -5.75489 -3.14521 2.68425 2.85800 3.02028 3.34531 3.39674 3.40909 3.71130 4.25921 4.29568 4.39536 4.59935 4.77948 4.85280 4.90350 5.02195 5.14027 5.19513 5.27176 5.34332 5.36356 5.44009 5.46238 5.57981 5.63523 5.67692 5.73297 5.76326 5.83864 5.90271 5.95239 6.07927 6.13852 6.15363 6.17735 6.33590 6.44581 6.47460 6.53471 6.63936 6.77164 6.84258 6.97471 7.15779 7.17049 7.34035 7.46181 7.78797 8.03588 8.16537 8.30124 8.69573 9.06196 9.69363 10.51380 11.33418 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.003512 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.603163 B = 7969.992024 C = 8902.989755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.143 3.857 4 H 0.111 0.889 5 C 0.501 3.499 6 O -0.533 6.533 7 N -0.704 5.704 8 C 0.131 3.869 9 H 0.079 0.921 10 C -0.141 4.141 11 C 0.154 3.846 12 H 0.153 0.847 13 C -0.139 4.139 14 C -0.128 4.128 15 C 0.126 3.874 16 H 0.087 0.913 17 N -0.591 5.591 18 C -0.214 4.214 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.915 3.085 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 N -0.604 5.604 27 C 0.103 3.897 28 C -0.129 4.129 29 C -0.155 4.155 30 C 0.526 3.474 31 O -0.517 6.517 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.401 0.599 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.254 0.746 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.933 2.509 13.587 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.036 3.964 4 H 0.129 0.871 5 C 0.284 3.716 6 O -0.410 6.410 7 N -0.354 5.354 8 C 0.025 3.975 9 H 0.097 0.903 10 C -0.182 4.182 11 C 0.047 3.953 12 H 0.170 0.830 13 C -0.178 4.178 14 C -0.168 4.168 15 C 0.017 3.983 16 H 0.105 0.895 17 N -0.312 5.312 18 C -0.342 4.342 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.746 3.254 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.213 1.213 26 N -0.339 5.339 27 C -0.020 4.020 28 C -0.167 4.167 29 C -0.195 4.195 30 C 0.313 3.687 31 O -0.392 6.392 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.236 0.764 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.116 0.884 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.137 2.348 13.932 17.990 hybrid contribution -0.644 -0.335 -1.230 1.428 sum -11.781 2.012 12.702 17.441 Atomic orbital electron populations 1.21701 0.94839 1.01928 1.01707 1.21883 0.96854 0.94322 1.04367 1.20887 0.92962 0.95472 0.87103 0.87123 1.20650 0.89958 0.78747 0.82215 1.90667 1.64909 1.45242 1.40138 1.45939 1.08487 1.59074 1.21905 1.22582 0.78576 0.97941 0.98435 0.90346 1.23433 1.00132 0.96154 0.98452 1.23757 0.86753 0.90058 0.94715 0.83027 1.23066 0.99815 0.96502 0.98451 1.22870 0.96831 0.98667 0.98385 1.23163 0.94299 0.93989 0.86836 0.89481 1.46543 1.57257 1.21148 1.06248 1.18959 1.23595 1.04017 0.87625 0.90477 1.24692 1.00894 0.97124 0.97854 1.69456 1.45500 1.14197 1.27619 0.86150 0.79155 0.77523 0.82616 1.21307 1.21641 1.21308 1.47890 1.51722 1.28902 1.05350 1.22133 0.94264 0.87790 0.97796 1.22594 0.98376 1.01788 0.93944 1.22315 0.99438 0.99571 0.98179 1.20673 0.79390 0.84619 0.84000 1.90707 1.36513 1.28381 1.83556 0.92793 0.92542 0.92354 0.90078 0.89825 0.76414 0.92974 0.92372 0.92642 0.93372 0.92457 0.93008 0.93519 0.91054 0.90356 0.90032 0.89285 0.88414 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.80 37.16 0.36 -1.00 16 2 C -0.14 -1.65 5.30 -26.73 -0.14 -1.79 16 3 C 0.14 1.90 2.67 -69.08 -0.18 1.72 16 4 H 0.11 1.25 8.07 -51.93 -0.42 0.83 16 5 C 0.50 8.82 6.85 -10.99 -0.08 8.74 16 6 O -0.53 -11.35 14.51 -9.66 -0.14 -11.49 16 7 N -0.70 -12.45 4.93 -51.43 -0.25 -12.70 16 8 C 0.13 2.55 2.80 -65.47 -0.18 2.36 16 9 H 0.08 1.60 7.23 -51.93 -0.38 1.22 16 10 C -0.14 -2.94 6.23 -24.23 -0.15 -3.09 16 11 C 0.15 3.52 4.72 -62.80 -0.30 3.22 16 12 H 0.15 3.96 5.52 -51.93 -0.29 3.68 16 13 C -0.14 -2.80 6.44 -24.23 -0.16 -2.96 16 14 C -0.13 -2.40 6.44 -24.24 -0.16 -2.56 16 15 C 0.13 2.51 5.06 -62.81 -0.32 2.19 16 16 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 17 N -0.59 -13.96 2.99 -145.82 -0.44 -14.39 16 18 C -0.21 -5.53 10.59 -15.06 -0.16 -5.69 16 19 H 0.08 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -25.50 10.47 55.49 0.58 -24.92 16 22 Si 0.91 21.10 29.55 -169.99 -5.02 16.07 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 N -0.60 -7.51 2.08 -166.05 -0.34 -7.85 16 27 C 0.10 0.86 7.31 -3.03 -0.02 0.83 16 28 C -0.13 -0.81 7.19 -25.00 -0.18 -0.99 16 29 C -0.15 -1.45 6.86 -26.74 -0.18 -1.63 16 30 C 0.53 7.56 6.69 -10.86 -0.07 7.49 16 31 O -0.52 -9.79 15.34 -9.66 -0.15 -9.93 16 32 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.94 7.43 -51.93 -0.39 0.56 16 36 H 0.08 1.23 6.65 -51.93 -0.35 0.89 16 37 H 0.40 6.74 8.02 -40.82 -0.33 6.41 16 38 H 0.05 1.03 7.81 -51.93 -0.41 0.62 16 39 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.88 7.81 -51.93 -0.41 0.47 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.88 7.82 -51.93 -0.41 0.48 16 44 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -33.21 389.41 -10.28 -43.49 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.37 Total: 9.37 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.01 Total: 6.50 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.45 Total: -59.87 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.29 Total: -21.43 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.21 -10.28 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111423987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.252 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds