Wall clock time and date at job start Tue Mar 31 2020 18:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47059 * 2 1 4 4 H 1.09001 * 109.47122 * 305.00849 * 3 2 1 5 5 C 1.50693 * 109.47176 * 185.00091 * 3 2 1 6 6 O 1.21275 * 120.00369 * 239.99909 * 5 3 2 7 7 N 1.34782 * 120.00008 * 60.00146 * 5 3 2 8 8 C 1.46497 * 120.00026 * 179.97438 * 7 5 3 9 9 H 1.08997 * 110.68306 * 32.01154 * 8 7 5 10 10 C 1.54853 * 110.62768 * 269.02675 * 8 7 5 11 11 C 1.55848 * 103.44611 * 241.51513 * 10 8 7 12 12 H 1.09005 * 116.13018 * 159.15035 * 11 10 8 13 13 C 1.55847 * 105.06035 * 288.17058 * 11 10 8 14 14 C 1.54853 * 103.44204 * 71.82646 * 13 11 10 15 15 C 1.55840 * 103.45030 * 359.97438 * 14 13 11 16 16 H 1.08994 * 116.13379 * 159.14507 * 15 14 13 17 17 N 1.50239 * 101.05164 * 32.93551 * 11 10 8 18 18 C 1.36934 * 130.83734 * 126.01891 * 17 11 10 19 19 H 1.08004 * 119.99653 * 180.02562 * 18 17 11 20 20 C 1.38810 * 119.99980 * 0.02562 * 18 17 11 21 21 N 1.31622 * 120.00264 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99802 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47249 * 60.00532 * 22 20 18 24 24 H 1.48502 * 109.47226 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47244 * 300.00372 * 22 20 18 26 26 N 1.46499 * 109.47066 * 65.00325 * 3 2 1 27 27 C 1.46764 * 124.35223 * 239.72626 * 26 3 2 28 28 C 1.54659 * 105.38761 * 162.85090 * 27 26 3 29 29 C 1.54634 * 101.68149 * 25.76687 * 28 27 26 30 30 C 1.34424 * 124.35128 * 60.02346 * 26 3 2 31 31 O 1.21284 * 124.93744 * 0.38708 * 30 26 3 32 32 H 1.09002 * 109.47256 * 299.99357 * 1 2 3 33 33 H 1.08995 * 109.47787 * 59.99508 * 1 2 3 34 34 H 1.08999 * 109.47416 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.46559 * 240.00470 * 2 1 3 36 36 H 1.08992 * 109.47343 * 119.99889 * 2 1 3 37 37 H 0.97000 * 119.99463 * 0.02562 * 7 5 3 38 38 H 1.08994 * 110.63069 * 123.02255 * 10 8 7 39 39 H 1.09000 * 110.62636 * 359.97438 * 10 8 7 40 40 H 1.08997 * 110.62560 * 190.31487 * 13 11 10 41 41 H 1.08991 * 110.63025 * 313.33912 * 13 11 10 42 42 H 1.09002 * 110.62748 * 118.49166 * 14 13 11 43 43 H 1.09007 * 110.62507 * 241.50562 * 14 13 11 44 44 H 0.96997 * 119.99544 * 179.97438 * 21 20 18 45 45 H 1.09002 * 110.24873 * 281.98751 * 27 26 3 46 46 H 1.09000 * 110.24405 * 43.98146 * 27 26 3 47 47 H 1.09003 * 111.19216 * 267.59722 * 28 27 26 48 48 H 1.08995 * 110.82291 * 143.77214 * 28 27 26 49 49 H 1.08992 * 110.48595 * 216.31188 * 29 28 27 50 50 H 1.09000 * 110.59439 * 93.71688 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1238 6 8 4.2215 1.9436 0.7476 7 7 4.1296 0.8912 -1.2032 8 6 5.5896 0.8935 -1.3239 9 1 6.0572 0.8289 -0.3414 10 6 6.0729 2.1579 -2.0759 11 6 6.7762 1.5805 -3.3411 12 1 6.8858 2.2637 -4.1834 13 6 8.0981 0.9446 -2.8149 14 6 7.6149 -0.3199 -2.0628 15 6 6.0668 -0.2755 -2.2365 16 1 5.5414 -1.2210 -2.1028 17 7 5.9478 0.3533 -3.5963 18 6 5.2874 -0.0633 -4.7211 19 1 4.7349 -0.9913 -4.7104 20 6 5.3281 0.7070 -5.8752 21 7 6.0019 1.8376 -5.8884 22 14 4.4266 0.1389 -7.4095 23 1 2.9770 0.0125 -7.1136 24 1 4.6257 1.1310 -8.4964 25 1 4.9610 -1.1785 -7.8384 26 7 1.6524 2.0975 1.2518 27 6 0.8123 3.2981 1.3328 28 6 0.3192 3.3560 2.7975 29 6 1.4370 2.5827 3.5349 30 6 2.0254 1.6793 2.4737 31 8 2.7306 0.7173 2.6934 32 1 -0.3634 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8932 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 3.5859 0.4923 -1.9004 38 1 6.7802 2.7204 -1.4665 39 1 5.2262 2.7831 -2.3595 40 1 8.7501 0.6721 -3.6448 41 1 8.6071 1.6257 -2.1330 42 1 8.0272 -1.2195 -2.5198 43 1 7.8843 -0.2657 -1.0080 44 1 6.0306 2.3756 -6.6950 45 1 1.3984 4.1855 1.0939 46 1 -0.0359 3.2114 0.6537 47 1 -0.6418 2.8540 2.9099 48 1 0.2624 4.3869 3.1468 49 1 1.0185 1.9919 4.3497 50 1 2.1936 3.2703 3.9129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111423987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:34 Heat of formation + Delta-G solvation = -43.991275 kcal Electronic energy + Delta-G solvation = -30940.271368 eV Core-core repulsion = 26967.743124 eV Total energy + Delta-G solvation = -3972.528244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90693 -41.00208 -39.61517 -37.37655 -35.88821 -35.21940 -34.36759 -31.93010 -30.97981 -30.55471 -29.67425 -28.42060 -27.71950 -26.08839 -23.50871 -23.03140 -22.69878 -21.65110 -21.50805 -20.47026 -19.85832 -18.84866 -18.43439 -17.92799 -17.07711 -16.98479 -16.73949 -16.39351 -15.88072 -15.64867 -15.45747 -15.20066 -15.01140 -14.58575 -14.54678 -14.25347 -13.81167 -13.75537 -13.72603 -13.57905 -13.33110 -13.00223 -12.91662 -12.84941 -12.78521 -12.67770 -12.40673 -12.16143 -12.12128 -12.01938 -11.98025 -11.93503 -11.78530 -11.71616 -11.22071 -10.97141 -10.92687 -10.73361 -10.63710 -9.95366 -9.64269 -8.87128 -7.74263 -5.14676 1.51167 1.53239 1.58988 1.61583 1.63984 1.92405 2.41907 2.51964 3.38209 3.42595 3.45098 3.64792 3.74792 3.84065 3.94961 3.99824 4.06605 4.08544 4.23974 4.24536 4.35668 4.43076 4.44524 4.48202 4.59479 4.66742 4.69477 4.70084 4.77447 4.80211 4.87233 4.87978 5.03039 5.05755 5.10501 5.11706 5.13524 5.16391 5.24761 5.32090 5.34536 5.50950 5.55228 5.58984 5.70602 5.89008 6.22182 6.26315 6.61844 7.06662 7.22155 7.33254 7.73194 8.59265 9.33009 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.003512 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.603163 B = 7969.992024 C = 8902.989755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.144 3.856 4 H 0.137 0.863 5 C 0.495 3.505 6 O -0.574 6.574 7 N -0.702 5.702 8 C 0.142 3.858 9 H 0.072 0.928 10 C -0.129 4.129 11 C 0.142 3.858 12 H 0.119 0.881 13 C -0.132 4.132 14 C -0.120 4.120 15 C 0.128 3.872 16 H 0.099 0.901 17 N -0.607 5.607 18 C -0.217 4.217 19 H 0.085 0.915 20 C -0.064 4.064 21 N -0.948 5.948 22 Si 0.975 3.025 23 H -0.275 1.275 24 H -0.301 1.301 25 H -0.284 1.284 26 N -0.604 5.604 27 C 0.093 3.907 28 C -0.112 4.112 29 C -0.151 4.151 30 C 0.506 3.494 31 O -0.576 6.576 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.406 0.594 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.246 0.754 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 2.506 14.340 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.037 3.963 4 H 0.154 0.846 5 C 0.281 3.719 6 O -0.453 6.453 7 N -0.352 5.352 8 C 0.035 3.965 9 H 0.090 0.910 10 C -0.170 4.170 11 C 0.036 3.964 12 H 0.137 0.863 13 C -0.172 4.172 14 C -0.160 4.160 15 C 0.020 3.980 16 H 0.117 0.883 17 N -0.329 5.329 18 C -0.345 4.345 19 H 0.103 0.897 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.805 3.195 23 H -0.201 1.201 24 H -0.228 1.228 25 H -0.211 1.211 26 N -0.337 5.337 27 C -0.028 4.028 28 C -0.150 4.150 29 C -0.191 4.191 30 C 0.296 3.704 31 O -0.455 6.455 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.242 0.758 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.133 0.867 49 H 0.128 0.872 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.583 2.353 14.694 20.148 hybrid contribution 0.145 -0.316 -1.429 1.471 sum -13.439 2.037 13.265 18.992 Atomic orbital electron populations 1.21652 0.92272 1.02723 1.02702 1.21817 0.98950 0.93061 1.02939 1.20950 0.89737 0.96924 0.88711 0.84555 1.21487 0.91896 0.77366 0.81137 1.90640 1.66329 1.46931 1.41357 1.45904 1.07831 1.59143 1.22295 1.22335 0.79800 0.96866 0.97534 0.90959 1.23274 0.99386 0.96477 0.97832 1.23594 0.88485 0.89893 0.94471 0.86347 1.22969 0.98288 0.97423 0.98479 1.22830 0.95637 0.97970 0.99577 1.23321 0.95343 0.94345 0.84969 0.88266 1.46698 1.57322 1.21803 1.07043 1.19318 1.22963 1.03945 0.88301 0.89695 1.25419 1.02266 0.97503 1.00502 1.69705 1.47148 1.15285 1.27606 0.85189 0.78585 0.76578 0.79159 1.20130 1.22754 1.21102 1.48121 1.51460 1.29695 1.04469 1.22489 0.94454 0.85834 1.00067 1.22641 0.97733 1.03017 0.91578 1.22362 1.00399 0.99054 0.97319 1.21636 0.78696 0.84391 0.85660 1.90661 1.39188 1.31043 1.84636 0.92425 0.90789 0.91741 0.89876 0.92887 0.75807 0.92140 0.94351 0.94062 0.91379 0.92067 0.90709 0.94465 0.91320 0.87616 0.88024 0.86694 0.87177 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.80 71.98 0.71 -1.53 16 2 C -0.13 -3.02 5.30 30.59 0.16 -2.85 16 3 C 0.14 3.69 2.67 44.24 0.12 3.80 16 4 H 0.14 2.76 8.07 -2.39 -0.02 2.74 16 5 C 0.50 17.47 6.85 87.65 0.60 18.07 16 6 O -0.57 -24.86 14.51 11.54 0.17 -24.69 16 7 N -0.70 -24.71 4.93 -435.02 -2.15 -26.85 16 8 C 0.14 5.47 2.80 46.59 0.13 5.60 16 9 H 0.07 2.93 7.23 -2.39 -0.02 2.91 16 10 C -0.13 -5.42 6.23 32.21 0.20 -5.22 16 11 C 0.14 6.60 4.72 46.23 0.22 6.82 16 12 H 0.12 6.43 5.52 -2.38 -0.01 6.41 16 13 C -0.13 -5.29 6.44 32.21 0.21 -5.08 16 14 C -0.12 -4.36 6.44 32.21 0.21 -4.15 16 15 C 0.13 4.98 5.06 46.20 0.23 5.21 16 16 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 17 N -0.61 -28.67 2.99 -615.25 -1.84 -30.50 16 18 C -0.22 -11.14 10.59 84.03 0.89 -10.25 16 19 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 21 N -0.95 -53.86 10.47 21.65 0.23 -53.64 16 22 Si 0.98 43.49 29.55 68.60 2.03 45.52 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 N -0.60 -14.22 2.08 -797.84 -1.66 -15.87 16 27 C 0.09 1.27 7.31 86.89 0.64 1.90 16 28 C -0.11 -1.00 7.19 31.72 0.23 -0.77 16 29 C -0.15 -2.57 6.86 30.59 0.21 -2.36 16 30 C 0.51 14.43 6.69 87.90 0.59 15.02 16 31 O -0.58 -22.56 15.34 11.51 0.18 -22.39 16 32 H 0.06 0.91 7.75 -2.39 -0.02 0.89 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.86 7.43 -2.39 -0.02 1.84 16 36 H 0.05 1.59 6.65 -2.39 -0.02 1.57 16 37 H 0.41 13.45 8.02 -92.71 -0.74 12.70 16 38 H 0.06 2.39 7.81 -2.39 -0.02 2.38 16 39 H 0.04 1.73 7.98 -2.39 -0.02 1.71 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 2.42 7.81 -2.39 -0.02 2.40 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.07 2.38 7.82 -2.38 -0.02 2.36 16 44 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -75.35 389.41 2.95 -72.40 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.19 Total: 34.78 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 5.80 Total: 21.24 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -5.41 Total: -126.86 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: 0.34 Total: -47.08 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.35 2.95 -72.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111423987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.408 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds