Wall clock time and date at job start Tue Mar 31 2020 19:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47032 * 209.32046 * 3 2 1 5 5 C 1.46896 * 110.99862 * 72.25765 * 4 3 2 6 6 C 1.53009 * 109.47093 * 201.13405 * 5 4 3 7 7 H 1.08994 * 109.46926 * 53.58901 * 6 5 4 8 8 O 1.42904 * 109.46955 * 293.58383 * 6 5 4 9 9 C 1.52998 * 109.46812 * 173.58849 * 6 5 4 10 10 C 1.47198 * 109.46730 * 185.00081 * 9 6 5 11 11 N 7.20811 * 99.49981 * 226.78698 * 2 1 3 12 12 C 1.46896 * 110.99885 * 196.21236 * 4 3 2 13 13 C 1.53117 * 109.52602 * 71.10045 * 12 4 3 14 14 C 1.53039 * 109.28354 * 182.44138 * 13 12 4 15 15 N 1.46853 * 109.51515 * 59.17780 * 14 13 12 16 16 C 1.46893 * 111.00092 * 174.15794 * 15 14 13 17 17 C 1.52997 * 109.47318 * 293.94616 * 16 15 14 18 18 H 1.09011 * 109.46907 * 60.33157 * 17 16 15 19 19 O 1.42897 * 109.47393 * 300.33286 * 17 16 15 20 20 C 1.50697 * 109.47398 * 180.33189 * 17 16 15 21 21 H 1.07996 * 120.00186 * 0.02562 * 20 17 16 22 22 C 1.37880 * 120.00376 * 180.02562 * 20 17 16 23 23 N 1.31510 * 120.00518 * 179.97438 * 22 20 17 24 24 Si 1.86805 * 119.99504 * 359.97438 * 22 20 17 25 25 H 1.48503 * 109.46683 * 90.00812 * 24 22 20 26 26 H 1.48503 * 109.47041 * 209.99957 * 24 22 20 27 27 H 1.48497 * 109.47401 * 330.00197 * 24 22 20 28 28 C 1.46844 * 111.19868 * 298.25050 * 15 14 13 29 29 C 1.53035 * 109.51840 * 61.75291 * 28 15 14 30 30 H 4.40884 * 5.52331 * 179.97438 * 4 1 2 31 31 H 1.09006 * 109.47000 * 89.32297 * 3 2 1 32 32 H 1.08996 * 109.47394 * 329.32125 * 3 2 1 33 33 H 1.08996 * 109.47517 * 321.13483 * 5 4 3 34 34 H 1.09008 * 109.47116 * 81.13640 * 5 4 3 35 35 H 0.96696 * 114.00561 * 300.00514 * 8 6 5 36 36 H 1.08996 * 109.47231 * 304.99942 * 9 6 5 37 37 H 1.09003 * 109.47556 * 65.00254 * 9 6 5 38 38 H 1.09007 * 109.52367 * 191.22261 * 12 4 3 39 39 H 1.08996 * 109.50647 * 62.49543 * 13 12 4 40 40 H 1.09007 * 109.49875 * 302.37559 * 13 12 4 41 41 H 1.08998 * 109.46813 * 179.18710 * 14 13 12 42 42 H 1.09000 * 109.46058 * 299.17257 * 14 13 12 43 43 H 1.08997 * 109.47250 * 53.94626 * 16 15 14 44 44 H 1.09007 * 109.47215 * 173.94660 * 16 15 14 45 45 H 0.96697 * 113.99990 * 299.99861 * 19 17 16 46 46 H 0.96993 * 120.00170 * 179.97438 * 23 22 20 47 47 H 1.09011 * 109.46987 * 301.73575 * 28 15 14 48 48 H 1.09003 * 109.45742 * 181.76693 * 28 15 14 49 49 H 1.09004 * 109.50363 * 180.87671 * 29 28 15 50 50 H 1.08994 * 109.50456 * 60.76069 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.2084 0.6782 5 6 2.9166 1.1229 2.1283 6 6 2.9302 2.5296 2.7300 7 1 2.2155 3.1586 2.1995 8 8 4.2399 3.0879 2.6063 9 6 2.5451 2.4554 4.2089 10 6 2.4413 3.8173 4.7577 11 7 2.3636 4.8678 5.1813 12 6 4.5520 1.4466 0.3725 13 6 4.6923 1.8996 -1.0834 14 6 6.1747 2.0873 -1.4137 15 7 6.8880 0.8206 -1.2055 16 6 8.2859 0.9252 -1.6443 17 6 8.3310 1.1231 -3.1608 18 1 7.8032 2.0400 -3.4234 19 8 7.7047 0.0119 -3.8050 20 6 9.7653 1.2223 -3.6121 21 1 10.5649 1.1509 -2.8897 22 6 10.0570 1.4042 -4.9474 23 7 11.3087 1.4913 -5.3412 24 14 8.6740 1.5269 -6.1971 25 1 8.2679 2.9474 -6.3479 26 1 9.1418 1.0042 -7.5060 27 1 7.5131 0.7269 -5.7309 28 6 6.8073 0.3900 0.1961 29 6 5.3437 0.1516 0.5744 30 1 -1.0502 -0.0001 -0.0003 31 1 3.0093 -0.0113 -1.0277 32 1 3.0098 -0.8830 0.5243 33 1 1.9523 0.6536 2.3234 34 1 3.7090 0.5265 2.5806 35 1 4.9286 2.5788 3.0553 36 1 1.5852 1.9490 4.3094 37 1 3.3076 1.9006 4.7556 38 1 4.9424 2.2202 1.0338 39 1 4.1659 2.8438 -1.2231 40 1 4.2656 1.1434 -1.7425 41 1 6.2789 2.3959 -2.4539 42 1 6.5975 2.8532 -0.7635 43 1 8.7583 1.7757 -1.1528 44 1 8.8187 0.0114 -1.3812 45 1 8.1229 -0.8392 -3.6158 46 1 11.5139 1.6188 -6.2805 47 1 7.2271 1.1640 0.8387 48 1 7.3710 -0.5340 0.3250 49 1 5.2829 -0.1530 1.6192 50 1 4.9273 -0.6319 -0.0585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119907544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:59 Heat of formation + Delta-G solvation = 1.743358 kcal Electronic energy + Delta-G solvation = -29691.972216 eV Core-core repulsion = 25721.427174 eV Total energy + Delta-G solvation = -3970.545042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.22456 -38.48214 -37.20841 -36.36922 -35.51422 -33.30699 -32.55286 -32.20472 -31.16040 -30.75268 -28.37068 -28.17012 -25.94079 -24.28620 -23.33526 -22.42720 -21.56901 -20.13409 -19.67348 -18.61377 -17.88304 -17.37610 -16.88328 -16.42418 -16.03983 -15.52348 -15.33196 -15.01356 -14.80778 -14.64102 -14.45088 -14.26649 -13.95749 -13.86845 -13.63106 -13.27371 -13.14278 -13.11799 -12.95329 -12.72039 -12.55131 -12.21580 -12.02593 -11.94120 -11.63731 -11.47998 -11.39973 -11.07960 -10.96650 -10.84391 -10.80145 -10.64441 -10.56828 -10.33889 -10.22751 -9.88203 -9.76547 -8.98311 -8.59902 -8.53013 -8.21683 -7.75943 -6.11295 -4.22408 2.31794 2.42787 2.53130 2.65935 3.41269 3.41708 3.50970 3.73708 3.78582 3.89492 4.15482 4.28339 4.43745 4.49217 4.56130 4.59276 4.72680 4.83151 4.89214 4.92286 5.08170 5.16097 5.20337 5.24529 5.30517 5.42536 5.49773 5.56774 5.65933 5.71693 5.80020 5.80507 5.86055 5.93532 6.00257 6.09783 6.21483 6.26659 6.31863 6.46795 6.63214 6.77262 6.85816 7.16046 7.20627 7.30530 7.41976 7.43436 7.61498 7.72124 8.31259 8.85542 9.13948 9.54059 10.99381 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.002634 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.282245 B =10626.419647 C =11569.437402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.154 3.846 4 N -0.522 5.522 5 C 0.021 3.979 6 C 0.118 3.882 7 H 0.115 0.885 8 O -0.546 6.546 9 C -0.059 4.059 10 C 0.210 3.790 11 N -0.431 5.431 12 C 0.070 3.930 13 C -0.102 4.102 14 C 0.056 3.944 15 N -0.529 5.529 16 C 0.041 3.959 17 C 0.202 3.798 18 H 0.052 0.948 19 O -0.570 6.570 20 C -0.566 4.566 21 H 0.070 0.930 22 C 0.083 3.917 23 N -0.895 5.895 24 Si 0.870 3.130 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.214 1.214 28 C 0.061 3.939 29 C -0.148 4.148 30 H 0.215 0.785 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.374 0.626 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.028 0.972 43 H 0.031 0.969 44 H 0.068 0.932 45 H 0.353 0.647 46 H 0.264 0.736 47 H 0.026 0.974 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.113 -5.299 18.513 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.173 4.173 3 C 0.028 3.972 4 N -0.244 5.244 5 C -0.108 4.108 6 C 0.057 3.943 7 H 0.133 0.867 8 O -0.352 6.352 9 C -0.100 4.100 10 C -0.109 4.109 11 N -0.108 5.108 12 C -0.037 4.037 13 C -0.141 4.141 14 C -0.072 4.072 15 N -0.253 5.253 16 C -0.086 4.086 17 C 0.144 3.856 18 H 0.070 0.930 19 O -0.375 6.375 20 C -0.603 4.603 21 H 0.088 0.912 22 C -0.121 4.121 23 N -0.532 5.532 24 Si 0.697 3.303 25 H -0.215 1.215 26 H -0.223 1.223 27 H -0.137 1.137 28 C -0.068 4.068 29 C -0.187 4.187 30 H 0.231 0.769 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.222 0.778 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.199 0.801 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.321 -2.733 17.992 28.032 hybrid contribution 0.957 -1.224 0.488 1.628 sum -20.364 -3.957 18.480 27.782 Atomic orbital electron populations 1.24855 0.95855 1.00640 1.01243 1.22991 0.94235 1.00040 1.00069 1.19147 0.84659 0.92028 1.01365 1.62009 1.19100 1.36010 1.07258 1.22816 1.02356 0.96272 0.89370 1.21935 0.86060 0.95272 0.91013 0.86684 1.86718 1.16561 1.54590 1.77293 1.20048 1.06079 0.86477 0.97407 1.28805 0.93463 0.94918 0.93672 1.81221 1.08572 1.11939 1.09064 1.22298 0.84800 0.97494 0.99138 1.21582 0.96027 1.01789 0.94664 1.22077 0.93103 0.90209 1.01844 1.61953 1.15211 1.30260 1.17920 1.22802 0.86004 1.00238 0.99567 1.19708 0.92920 0.86760 0.86234 0.93018 1.86659 1.60014 1.17436 1.73384 1.21525 0.91533 1.52947 0.94336 0.91177 1.24989 0.95685 0.92576 0.98860 1.69956 1.18363 1.48224 1.16622 0.87037 0.85261 0.78683 0.79350 1.21507 1.22343 1.13667 1.21946 0.95465 0.99802 0.89633 1.22293 0.96776 0.99333 1.00306 0.76854 0.87613 0.92052 0.89595 0.93177 0.77827 0.86303 0.87042 0.86996 0.91197 0.91341 0.89959 0.95380 0.95093 0.91385 0.80117 0.92621 0.95569 0.91235 0.92377 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.65 19.25 29.55 0.57 -1.08 16 2 C -0.17 -1.57 12.58 -37.12 -0.47 -2.04 16 3 C 0.15 1.31 4.01 -6.61 -0.03 1.29 16 4 N -0.52 -4.22 4.27 -229.98 -0.98 -5.21 16 5 C 0.02 0.10 4.52 -3.82 -0.02 0.09 16 6 C 0.12 0.60 3.16 -26.73 -0.08 0.51 16 7 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 8 O -0.55 -3.77 10.31 -35.23 -0.36 -4.13 16 9 C -0.06 -0.16 5.39 -29.52 -0.16 -0.32 16 10 C 0.21 1.60 15.18 -20.78 -0.32 1.29 16 11 N -0.43 -4.99 18.53 42.13 0.78 -4.21 16 12 C 0.07 0.66 2.11 -67.59 -0.14 0.51 16 13 C -0.10 -1.25 5.46 -26.65 -0.15 -1.40 16 14 C 0.06 0.84 5.29 -3.83 -0.02 0.82 16 15 N -0.53 -8.24 4.52 -234.67 -1.06 -9.29 16 16 C 0.04 0.78 4.56 -3.83 -0.02 0.76 16 17 C 0.20 4.58 2.19 -27.89 -0.06 4.52 16 18 H 0.05 1.23 5.88 -51.92 -0.31 0.92 16 19 O -0.57 -12.75 10.00 -35.23 -0.35 -13.10 16 20 C -0.57 -15.46 9.34 -34.44 -0.32 -15.79 16 21 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 22 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 23 N -0.89 -27.22 13.96 55.43 0.77 -26.45 16 24 Si 0.87 21.78 26.99 -169.99 -4.59 17.19 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.21 -5.24 5.31 56.52 0.30 -4.94 16 28 C 0.06 0.73 5.46 -3.84 -0.02 0.71 16 29 C -0.15 -1.37 4.64 -26.65 -0.12 -1.49 16 30 H 0.21 1.02 7.80 -54.08 -0.42 0.60 16 31 H 0.11 1.04 6.12 -51.93 -0.32 0.72 16 32 H 0.06 0.46 7.14 -51.93 -0.37 0.09 16 33 H 0.09 0.38 7.12 -51.93 -0.37 0.01 16 34 H 0.05 0.19 6.53 -51.92 -0.34 -0.15 16 35 H 0.37 1.34 8.87 45.56 0.40 1.75 16 36 H 0.12 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.11 0.05 8.14 -51.93 -0.42 -0.38 16 38 H 0.11 1.07 4.91 -51.92 -0.25 0.81 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.90 6.44 -51.93 -0.33 0.56 16 41 H 0.08 1.41 6.23 -51.93 -0.32 1.09 16 42 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.03 0.60 8.12 -51.93 -0.42 0.17 16 44 H 0.07 1.26 7.98 -51.93 -0.41 0.85 16 45 H 0.35 7.11 9.04 45.56 0.41 7.52 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 48 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 49 H 0.06 0.41 6.81 -51.93 -0.35 0.06 16 50 H 0.07 0.75 6.47 -51.93 -0.34 0.41 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -35.09 395.33 -7.64 -42.73 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.36 Total: 5.83 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.45 Total: -9.33 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.49 Total: -45.15 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.72 Total: -17.23 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.59 Total: 17.19 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.09 -7.64 -42.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119907544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.477 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds