Wall clock time and date at job start Tue Mar 31 2020 19:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47032 * 209.32046 * 3 2 1 5 5 C 1.46896 * 110.99862 * 72.25765 * 4 3 2 6 6 C 1.53009 * 109.47093 * 201.13405 * 5 4 3 7 7 H 1.08994 * 109.46926 * 53.58901 * 6 5 4 8 8 O 1.42904 * 109.46955 * 293.58383 * 6 5 4 9 9 C 1.52998 * 109.46812 * 173.58849 * 6 5 4 10 10 C 1.47198 * 109.46730 * 185.00081 * 9 6 5 11 11 N 7.20811 * 99.49981 * 226.78698 * 2 1 3 12 12 C 1.46896 * 110.99885 * 196.21236 * 4 3 2 13 13 C 1.53117 * 109.52602 * 71.10045 * 12 4 3 14 14 C 1.53039 * 109.28354 * 182.44138 * 13 12 4 15 15 N 1.46853 * 109.51515 * 59.17780 * 14 13 12 16 16 C 1.46893 * 111.00092 * 174.15794 * 15 14 13 17 17 C 1.52997 * 109.47318 * 293.94616 * 16 15 14 18 18 H 1.09011 * 109.46907 * 60.33157 * 17 16 15 19 19 O 1.42897 * 109.47393 * 300.33286 * 17 16 15 20 20 C 1.50697 * 109.47398 * 180.33189 * 17 16 15 21 21 H 1.07996 * 120.00186 * 0.02562 * 20 17 16 22 22 C 1.37880 * 120.00376 * 180.02562 * 20 17 16 23 23 N 1.31510 * 120.00518 * 179.97438 * 22 20 17 24 24 Si 1.86805 * 119.99504 * 359.97438 * 22 20 17 25 25 H 1.48503 * 109.46683 * 90.00812 * 24 22 20 26 26 H 1.48503 * 109.47041 * 209.99957 * 24 22 20 27 27 H 1.48497 * 109.47401 * 330.00197 * 24 22 20 28 28 C 1.46844 * 111.19868 * 298.25050 * 15 14 13 29 29 C 1.53035 * 109.51840 * 61.75291 * 28 15 14 30 30 H 4.40884 * 5.52331 * 179.97438 * 4 1 2 31 31 H 1.09006 * 109.47000 * 89.32297 * 3 2 1 32 32 H 1.08996 * 109.47394 * 329.32125 * 3 2 1 33 33 H 1.08996 * 109.47517 * 321.13483 * 5 4 3 34 34 H 1.09008 * 109.47116 * 81.13640 * 5 4 3 35 35 H 0.96696 * 114.00561 * 300.00514 * 8 6 5 36 36 H 1.08996 * 109.47231 * 304.99942 * 9 6 5 37 37 H 1.09003 * 109.47556 * 65.00254 * 9 6 5 38 38 H 1.09007 * 109.52367 * 191.22261 * 12 4 3 39 39 H 1.08996 * 109.50647 * 62.49543 * 13 12 4 40 40 H 1.09007 * 109.49875 * 302.37559 * 13 12 4 41 41 H 1.08998 * 109.46813 * 179.18710 * 14 13 12 42 42 H 1.09000 * 109.46058 * 299.17257 * 14 13 12 43 43 H 1.08997 * 109.47250 * 53.94626 * 16 15 14 44 44 H 1.09007 * 109.47215 * 173.94660 * 16 15 14 45 45 H 0.96697 * 113.99990 * 299.99861 * 19 17 16 46 46 H 0.96993 * 120.00170 * 179.97438 * 23 22 20 47 47 H 1.09011 * 109.46987 * 301.73575 * 28 15 14 48 48 H 1.09003 * 109.45742 * 181.76693 * 28 15 14 49 49 H 1.09004 * 109.50363 * 180.87671 * 29 28 15 50 50 H 1.08994 * 109.50456 * 60.76069 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.2084 0.6782 5 6 2.9166 1.1229 2.1283 6 6 2.9302 2.5296 2.7300 7 1 2.2155 3.1586 2.1995 8 8 4.2399 3.0879 2.6063 9 6 2.5451 2.4554 4.2089 10 6 2.4413 3.8173 4.7577 11 7 2.3636 4.8678 5.1813 12 6 4.5520 1.4466 0.3725 13 6 4.6923 1.8996 -1.0834 14 6 6.1747 2.0873 -1.4137 15 7 6.8880 0.8206 -1.2055 16 6 8.2859 0.9252 -1.6443 17 6 8.3310 1.1231 -3.1608 18 1 7.8032 2.0400 -3.4234 19 8 7.7047 0.0119 -3.8050 20 6 9.7653 1.2223 -3.6121 21 1 10.5649 1.1509 -2.8897 22 6 10.0570 1.4042 -4.9474 23 7 11.3087 1.4913 -5.3412 24 14 8.6740 1.5269 -6.1971 25 1 8.2679 2.9474 -6.3479 26 1 9.1418 1.0042 -7.5060 27 1 7.5131 0.7269 -5.7309 28 6 6.8073 0.3900 0.1961 29 6 5.3437 0.1516 0.5744 30 1 -1.0502 -0.0001 -0.0003 31 1 3.0093 -0.0113 -1.0277 32 1 3.0098 -0.8830 0.5243 33 1 1.9523 0.6536 2.3234 34 1 3.7090 0.5265 2.5806 35 1 4.9286 2.5788 3.0553 36 1 1.5852 1.9490 4.3094 37 1 3.3076 1.9006 4.7556 38 1 4.9424 2.2202 1.0338 39 1 4.1659 2.8438 -1.2231 40 1 4.2656 1.1434 -1.7425 41 1 6.2789 2.3959 -2.4539 42 1 6.5975 2.8532 -0.7635 43 1 8.7583 1.7757 -1.1528 44 1 8.8187 0.0114 -1.3812 45 1 8.1229 -0.8392 -3.6158 46 1 11.5139 1.6188 -6.2805 47 1 7.2271 1.1640 0.8387 48 1 7.3710 -0.5340 0.3250 49 1 5.2829 -0.1530 1.6192 50 1 4.9273 -0.6319 -0.0585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119907544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:58 Heat of formation + Delta-G solvation = -27.736666 kcal Electronic energy + Delta-G solvation = -29693.250566 eV Core-core repulsion = 25721.427174 eV Total energy + Delta-G solvation = -3971.823392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95408 -39.32991 -38.19545 -37.21296 -36.72933 -34.39111 -34.08134 -33.12052 -31.97998 -31.74878 -29.94141 -28.71617 -27.12434 -25.52193 -24.29961 -23.28674 -22.45108 -21.59890 -20.55029 -19.37461 -19.14744 -18.42927 -17.39021 -17.02862 -16.82052 -16.55383 -16.51396 -16.30574 -15.97066 -15.85561 -15.49507 -15.28972 -14.99963 -14.73599 -14.69362 -14.57837 -14.24417 -13.88374 -13.81655 -13.62830 -13.52672 -13.28471 -13.07427 -12.91671 -12.74505 -12.66977 -12.39324 -12.30909 -12.07954 -11.97994 -11.86054 -11.82221 -11.49570 -11.34245 -11.30358 -10.94407 -10.92062 -10.78687 -10.45932 -10.07091 -9.11458 -9.03349 -8.34458 -6.48225 1.40025 1.45670 1.76487 1.76708 1.89582 1.94284 2.05547 2.45017 2.96045 3.03559 3.08287 3.22686 3.58180 3.66327 3.93688 3.94858 4.01137 4.15690 4.18110 4.25720 4.28196 4.35812 4.44320 4.49607 4.53698 4.58477 4.64655 4.66260 4.74310 4.80411 4.82304 4.89012 4.96146 5.03037 5.06259 5.11363 5.18785 5.24381 5.24968 5.36473 5.51040 5.52267 5.55464 6.09657 6.12253 6.26163 6.26873 6.40361 6.64919 6.68916 6.84911 6.93150 7.25501 7.41867 8.79743 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.002634 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.282245 B =10626.419647 C =11569.437402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C 0.158 3.842 4 N -0.533 5.533 5 C 0.024 3.976 6 C 0.123 3.877 7 H 0.091 0.909 8 O -0.572 6.572 9 C -0.051 4.051 10 C 0.237 3.763 11 N -0.512 5.512 12 C 0.082 3.918 13 C -0.096 4.096 14 C 0.057 3.943 15 N -0.533 5.533 16 C 0.055 3.945 17 C 0.209 3.791 18 H 0.044 0.956 19 O -0.572 6.572 20 C -0.565 4.565 21 H 0.037 0.963 22 C 0.028 3.972 23 N -0.940 5.940 24 Si 0.936 3.064 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.204 1.204 28 C 0.057 3.943 29 C -0.137 4.137 30 H 0.240 0.760 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.388 0.612 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.028 0.972 43 H 0.021 0.979 44 H 0.070 0.930 45 H 0.365 0.635 46 H 0.266 0.734 47 H 0.033 0.967 48 H 0.073 0.927 49 H 0.093 0.907 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.628 -7.180 20.356 31.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.205 4.205 3 C 0.032 3.968 4 N -0.255 5.255 5 C -0.104 4.104 6 C 0.062 3.938 7 H 0.109 0.891 8 O -0.380 6.380 9 C -0.091 4.091 10 C -0.079 4.079 11 N -0.190 5.190 12 C -0.026 4.026 13 C -0.135 4.135 14 C -0.071 4.071 15 N -0.258 5.258 16 C -0.073 4.073 17 C 0.151 3.849 18 H 0.061 0.939 19 O -0.378 6.378 20 C -0.603 4.603 21 H 0.055 0.945 22 C -0.171 4.171 23 N -0.580 5.580 24 Si 0.761 3.239 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.125 1.125 28 C -0.071 4.071 29 C -0.176 4.176 30 H 0.256 0.744 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.239 0.761 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.039 0.961 44 H 0.088 0.912 45 H 0.212 0.788 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.091 0.909 49 H 0.111 0.889 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.850 -4.636 19.865 31.383 hybrid contribution 1.744 -0.678 -0.061 1.873 sum -22.106 -5.314 19.804 30.151 Atomic orbital electron populations 1.25583 0.96696 0.99539 1.00011 1.23302 0.94849 1.01127 1.01233 1.19063 0.84632 0.92609 1.00533 1.61900 1.17819 1.36298 1.09469 1.22875 1.03884 0.96385 0.87244 1.21817 0.85019 0.94787 0.92142 0.89132 1.86688 1.17694 1.55670 1.77933 1.20337 1.08979 0.84079 0.95710 1.29727 0.91047 0.95351 0.91782 1.81245 1.11469 1.14498 1.11781 1.22103 0.85990 0.97676 0.96839 1.21490 0.93612 1.01377 0.96973 1.22033 0.94948 0.90017 1.00117 1.61897 1.12737 1.30437 1.20744 1.22442 0.88300 0.99892 0.96680 1.19486 0.89762 0.86725 0.88933 0.93850 1.86590 1.59722 1.17881 1.73604 1.21881 0.93268 1.51499 0.93618 0.94484 1.25831 0.97671 0.92591 1.01030 1.70077 1.20396 1.50373 1.17130 0.86030 0.82583 0.78579 0.76754 1.21503 1.22444 1.12538 1.22084 0.97831 0.99911 0.87284 1.22236 0.94235 0.98917 1.02212 0.74397 0.89624 0.90698 0.88362 0.90770 0.76131 0.83108 0.83390 0.86642 0.91715 0.92336 0.92871 0.95427 0.96098 0.91157 0.78814 0.92515 0.94927 0.90895 0.88851 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.65 19.25 74.32 1.43 -1.22 16 2 C -0.20 -3.24 12.58 31.13 0.39 -2.85 16 3 C 0.16 2.32 4.01 84.50 0.34 2.66 16 4 N -0.53 -7.18 4.27 -881.54 -3.76 -10.94 16 5 C 0.02 0.14 4.52 86.31 0.39 0.53 16 6 C 0.12 0.86 3.16 30.60 0.10 0.95 16 7 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 8 O -0.57 -6.36 10.31 -148.98 -1.54 -7.89 16 9 C -0.05 -0.07 5.39 28.79 0.16 0.08 16 10 C 0.24 3.21 15.18 89.45 1.36 4.56 16 11 N -0.51 -11.75 18.53 20.00 0.37 -11.38 16 12 C 0.08 1.33 2.11 44.99 0.09 1.43 16 13 C -0.10 -2.28 5.46 30.65 0.17 -2.12 16 14 C 0.06 1.70 5.29 86.33 0.46 2.16 16 15 N -0.53 -16.07 4.52 -896.36 -4.05 -20.11 16 16 C 0.06 2.06 4.56 86.30 0.39 2.45 16 17 C 0.21 9.52 2.19 29.85 0.07 9.59 16 18 H 0.04 2.08 5.88 -2.38 -0.01 2.06 16 19 O -0.57 -24.99 10.00 -148.98 -1.49 -26.48 16 20 C -0.56 -31.52 9.34 25.60 0.24 -31.29 16 21 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 22 C 0.03 1.64 5.47 84.66 0.46 2.11 16 23 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 24 Si 0.94 45.67 26.99 68.60 1.85 47.52 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.20 -9.49 5.31 99.48 0.53 -8.96 16 28 C 0.06 1.24 5.46 86.33 0.47 1.71 16 29 C -0.14 -2.06 4.64 30.65 0.14 -1.92 16 30 H 0.24 1.51 7.80 -4.41 -0.03 1.48 16 31 H 0.09 1.59 6.12 -2.38 -0.01 1.58 16 32 H 0.08 0.86 7.14 -2.39 -0.02 0.85 16 33 H 0.10 0.41 7.12 -2.39 -0.02 0.39 16 34 H 0.07 0.13 6.53 -2.38 -0.02 0.11 16 35 H 0.39 1.37 8.87 -74.06 -0.66 0.71 16 36 H 0.15 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.15 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.12 1.88 4.91 -2.38 -0.01 1.87 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.51 6.44 -2.38 -0.02 1.49 16 41 H 0.05 1.86 6.23 -2.39 -0.01 1.85 16 42 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 44 H 0.07 2.57 7.98 -2.38 -0.02 2.55 16 45 H 0.36 14.23 9.04 -74.06 -0.67 13.56 16 46 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 47 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.07 1.56 8.01 -2.39 -0.02 1.54 16 49 H 0.09 0.81 6.81 -2.38 -0.02 0.79 16 50 H 0.07 1.15 6.47 -2.39 -0.02 1.14 16 Total: -1.00 -80.02 395.33 -2.20 -82.22 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.54 Total: 16.56 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 6.66 Total: -11.16 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -7.14 Total: -100.77 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -3.03 Total: -34.38 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.85 Total: 47.52 kcal Total: -80.02 -2.20 -82.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119907544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.486 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds