Wall clock time and date at job start Tue Mar 31 2020 18:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46924 * 2 1 4 4 H 1.09005 * 109.46936 * 55.00295 * 3 2 1 5 5 C 1.52997 * 109.47010 * 295.00023 * 3 2 1 6 6 C 1.50699 * 109.46917 * 175.00282 * 3 2 1 7 7 C 1.41258 * 126.70801 * 84.71050 * 6 3 2 8 8 C 1.36830 * 103.85047 * 179.89051 * 7 6 3 9 9 C 1.47505 * 126.94801 * 180.15217 * 8 7 6 10 10 O 1.21586 * 119.99608 * 0.28111 * 9 8 7 11 11 N 1.34772 * 120.00214 * 180.28230 * 9 8 7 12 12 C 1.46497 * 120.00016 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47343 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47430 * 175.02116 * 13 12 11 15 15 C 1.53003 * 115.55274 * 278.03842 * 14 13 12 16 16 N 1.46501 * 109.47053 * 303.89717 * 15 14 13 17 17 C 1.36937 * 120.00111 * 175.58965 * 16 15 14 18 18 H 1.08003 * 119.99621 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99854 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00406 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99657 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46647 * 90.00197 * 21 19 17 23 23 H 1.48493 * 109.46933 * 209.99813 * 21 19 17 24 24 H 1.48494 * 109.47110 * 329.99983 * 21 19 17 25 25 C 1.52999 * 117.49928 * 132.32658 * 14 13 12 26 26 C 1.52997 * 60.00104 * 252.51291 * 25 14 13 27 27 O 1.34647 * 106.10573 * 0.36155 * 8 7 6 28 28 N 1.20880 * 111.46859 * 359.75596 * 27 8 7 29 29 H 1.09007 * 109.46954 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47135 * 299.99491 * 1 2 3 31 31 H 1.08994 * 109.47656 * 59.99716 * 1 2 3 32 32 H 1.09001 * 109.47302 * 239.99980 * 2 1 3 33 33 H 1.08997 * 109.47533 * 119.99775 * 2 1 3 34 34 H 1.08996 * 109.47452 * 299.99766 * 5 3 2 35 35 H 1.08999 * 109.47438 * 60.00145 * 5 3 2 36 36 H 1.09001 * 109.46945 * 180.02562 * 5 3 2 37 37 H 1.08000 * 128.07418 * 0.02562 * 7 6 3 38 38 H 0.96996 * 119.99841 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.47444 * 299.99883 * 12 11 9 40 40 H 1.09002 * 109.47348 * 59.99696 * 12 11 9 41 41 H 1.08996 * 109.47307 * 295.02690 * 13 12 11 42 42 H 1.09001 * 109.46839 * 55.02329 * 13 12 11 43 43 H 1.08997 * 109.46888 * 63.89836 * 15 14 13 44 44 H 1.09000 * 109.47094 * 183.89943 * 15 14 13 45 45 H 0.97001 * 119.99717 * 355.59309 * 16 15 14 46 46 H 0.97000 * 120.00264 * 179.97438 * 20 19 17 47 47 H 1.09004 * 117.49658 * 0.02562 * 25 14 13 48 48 H 1.09001 * 117.49987 * 145.01865 * 25 14 13 49 49 H 1.09003 * 117.50006 * 252.50716 * 26 25 14 50 50 H 1.08999 * 117.50048 * 107.48894 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1265 -1.3073 6 6 3.5418 1.4443 0.1238 7 6 4.4758 1.3083 -0.9272 8 6 5.6890 1.3766 -0.2982 9 6 7.0203 1.2925 -0.9279 10 8 7.1154 1.1520 -2.1318 11 7 8.1310 1.3714 -0.1687 12 6 9.4531 1.2874 -0.7941 13 6 10.5347 1.4040 0.2818 14 6 11.9106 1.1924 -0.3530 15 6 12.3255 -0.2660 -0.5579 16 7 12.2690 -0.9744 0.7232 17 6 12.5120 -2.3212 0.7722 18 1 12.7457 -2.8610 -0.1336 19 6 12.4579 -2.9925 1.9860 20 7 12.1736 -2.3345 3.0898 21 14 12.7901 -4.8296 2.0528 22 1 14.2403 -5.0626 2.2716 23 1 12.0180 -5.4318 3.1692 24 1 12.3760 -5.4544 0.7710 25 6 13.0103 2.1984 -0.0074 26 6 12.3710 2.2112 -1.3974 27 8 5.4220 1.5315 1.0125 28 7 4.2317 1.5660 1.2204 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0698 1.5876 -2.1491 35 1 0.5488 2.1252 -1.3969 36 1 1.9988 3.1541 -1.3075 37 1 4.2784 1.1821 -1.9815 38 1 8.0551 1.4839 0.7917 39 1 9.5523 0.3308 -1.3072 40 1 9.5673 2.0987 -1.5130 41 1 10.4918 2.3947 0.7342 42 1 10.3678 0.6471 1.0482 43 1 11.6465 -0.7409 -1.2660 44 1 13.3423 -0.3029 -0.9489 45 1 12.0594 -0.4895 1.5367 46 1 12.1354 -2.8037 3.9379 47 1 12.7537 3.0108 0.6725 48 1 14.0298 1.8213 0.0742 49 1 12.9699 1.8427 -2.2303 50 1 11.6937 3.0323 -1.6322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167411401.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:59 Heat of formation + Delta-G solvation = 21.329070 kcal Electronic energy + Delta-G solvation = -28247.981954 eV Core-core repulsion = 24278.286212 eV Total energy + Delta-G solvation = -3969.695742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.13886 -40.88994 -39.52467 -38.14845 -36.24655 -35.79973 -34.26359 -33.26536 -32.78179 -31.04226 -30.40682 -27.83485 -26.31516 -25.88343 -24.60658 -24.14758 -23.85477 -22.87485 -22.08990 -21.09110 -19.98022 -19.30923 -18.91705 -18.87525 -17.34600 -17.31382 -16.84635 -16.59292 -16.12584 -15.94839 -15.87103 -15.59886 -15.15296 -14.98088 -14.81632 -14.72189 -14.53542 -14.20075 -13.90579 -13.68575 -13.17307 -13.04106 -13.02549 -12.90928 -12.79844 -12.58452 -12.52484 -12.25906 -12.20611 -12.12331 -11.98014 -11.93862 -11.88498 -11.60802 -11.52872 -11.10227 -11.08120 -10.90765 -10.89265 -10.53433 -10.25000 -8.95943 -7.94283 -5.21322 -0.35067 0.94198 1.44535 1.46376 1.47340 1.55720 1.81365 2.09433 2.54692 2.88903 2.91440 3.32595 3.39257 3.76848 3.84694 3.85244 3.87246 3.96036 3.99076 4.04120 4.09279 4.12220 4.26566 4.40450 4.43350 4.49354 4.54168 4.59517 4.64226 4.72673 4.82541 4.87299 4.93713 4.98037 5.01366 5.06518 5.09995 5.11142 5.14211 5.16607 5.26795 5.30732 5.36500 5.36712 5.40270 5.47033 5.50213 6.18072 6.28417 6.79562 6.97388 7.35696 8.12629 8.37649 9.28942 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.002363 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.255073 B =11845.741375 C =13694.263697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.013 4.013 4 H 0.091 0.909 5 C -0.145 4.145 6 C 0.023 3.977 7 C -0.141 4.141 8 C -0.091 4.091 9 C 0.606 3.394 10 O -0.544 6.544 11 N -0.702 5.702 12 C 0.132 3.868 13 C -0.082 4.082 14 C -0.140 4.140 15 C 0.187 3.813 16 N -0.736 5.736 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.073 4.073 20 N -0.965 5.965 21 Si 0.968 3.032 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.273 1.273 25 C -0.166 4.166 26 C -0.149 4.149 27 O 0.109 5.891 28 N -0.365 5.365 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.199 0.801 38 H 0.417 0.583 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.019 0.981 44 H 0.014 0.986 45 H 0.377 0.623 46 H 0.251 0.749 47 H 0.107 0.893 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.271 13.889 -9.341 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.032 4.032 4 H 0.110 0.890 5 C -0.203 4.203 6 C -0.135 4.135 7 C -0.163 4.163 8 C -0.157 4.157 9 C 0.390 3.610 10 O -0.423 6.423 11 N -0.352 5.352 12 C 0.010 3.990 13 C -0.120 4.120 14 C -0.141 4.141 15 C 0.060 3.940 16 N -0.379 5.379 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.265 4.265 20 N -0.616 5.616 21 Si 0.797 3.203 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.198 1.198 25 C -0.203 4.203 26 C -0.186 4.186 27 O 0.038 5.962 28 N -0.067 5.067 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.217 0.783 38 H 0.253 0.747 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.032 0.968 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.126 0.874 48 H 0.100 0.900 49 H 0.116 0.884 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.440 13.775 -8.997 26.238 hybrid contribution 0.541 -1.274 0.480 1.465 sum -19.899 12.500 -8.517 24.995 Atomic orbital electron populations 1.21801 0.93443 1.02516 1.02872 1.21565 0.97643 0.94092 1.02130 1.19783 0.83288 0.98592 1.01533 0.89038 1.21912 1.03307 1.00257 0.94781 1.24119 1.00196 1.01563 0.87600 1.23089 0.88822 1.01450 1.02987 1.24160 0.97170 1.09679 0.84716 1.16590 0.81643 0.77119 0.85696 1.90853 1.86016 1.51287 1.14107 1.45915 1.05648 1.71563 1.12068 1.21372 0.79432 1.02245 0.95983 1.21138 0.90982 1.02921 0.96912 1.21384 0.95322 0.91498 1.05914 1.20254 0.96534 0.89430 0.87753 1.42465 1.84702 1.05490 1.05252 1.19594 1.38275 0.86242 0.93424 0.91137 1.25475 1.03604 1.02056 0.95371 1.69792 1.57403 1.36277 0.98153 0.85220 0.77341 0.80683 0.77023 1.21407 1.22173 1.19764 1.23059 0.97026 1.00772 0.99433 1.23069 1.03091 1.00146 0.92282 1.84982 1.19625 1.66931 1.24710 1.73731 0.89436 1.18390 1.25151 0.92146 0.92361 0.90809 0.91169 0.93325 0.91408 0.89334 0.92336 0.78343 0.74683 0.92856 0.89565 0.89063 0.92204 0.96310 0.96780 0.79024 0.94049 0.87438 0.89985 0.88399 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 71.98 0.70 -0.67 16 2 C -0.12 -1.52 5.38 30.59 0.16 -1.36 16 3 C -0.01 -0.18 2.85 -11.54 -0.03 -0.21 16 4 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 5 C -0.15 -1.37 8.57 71.98 0.62 -0.75 16 6 C 0.02 0.47 6.20 43.55 0.27 0.74 16 7 C -0.14 -2.90 10.13 22.68 0.23 -2.67 16 8 C -0.09 -2.21 7.29 24.38 0.18 -2.03 16 9 C 0.61 16.37 7.82 86.69 0.68 17.04 16 10 O -0.54 -17.55 16.91 -3.99 -0.07 -17.61 16 11 N -0.70 -17.40 5.55 -466.31 -2.59 -19.99 16 12 C 0.13 3.48 5.49 86.38 0.47 3.95 16 13 C -0.08 -2.24 5.20 30.59 0.16 -2.08 16 14 C -0.14 -4.18 1.65 -52.18 -0.09 -4.27 16 15 C 0.19 7.44 6.15 86.38 0.53 7.97 16 16 N -0.74 -37.03 5.23 -343.45 -1.80 -38.82 16 17 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 18 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 20 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 21 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 25 C -0.17 -4.33 9.87 30.59 0.30 -4.03 16 26 C -0.15 -3.35 9.57 30.59 0.29 -3.06 16 27 O 0.11 2.71 11.04 65.78 0.73 3.43 16 28 N -0.37 -9.07 12.04 -48.86 -0.59 -9.66 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.48 6.56 -2.39 -0.02 0.46 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.59 7.49 -2.39 -0.02 0.57 16 35 H 0.09 0.53 6.57 -2.39 -0.02 0.52 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.20 3.24 7.66 -2.91 -0.02 3.22 16 38 H 0.42 9.01 8.30 -92.71 -0.77 8.24 16 39 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16 40 H 0.09 2.01 7.72 -2.39 -0.02 1.99 16 41 H 0.09 2.01 7.93 -2.39 -0.02 1.99 16 42 H 0.06 2.05 6.94 -2.39 -0.02 2.04 16 43 H 0.02 0.78 7.96 -2.39 -0.02 0.76 16 44 H 0.01 0.58 8.10 -2.39 -0.02 0.56 16 45 H 0.38 19.93 6.80 -92.71 -0.63 19.30 16 46 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 47 H 0.11 2.42 8.07 -2.38 -0.02 2.40 16 48 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.12 2.08 7.90 -2.39 -0.02 2.06 16 Total: -1.00 -69.49 413.28 3.33 -66.16 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.45 Total: 34.35 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 5.78 Total: -8.00 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -4.69 Total: -127.00 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.66 Total: -14.18 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -69.49 3.33 -66.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167411401.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.490 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds