Wall clock time and date at job start Tue Mar 31 2020 18:28:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53003 * 109.46924 * 2 1
4 4 H 1.09005 * 109.46936 * 55.00295 * 3 2 1
5 5 C 1.52997 * 109.47010 * 295.00023 * 3 2 1
6 6 C 1.50699 * 109.46917 * 175.00282 * 3 2 1
7 7 C 1.41258 * 126.70801 * 84.71050 * 6 3 2
8 8 C 1.36830 * 103.85047 * 179.89051 * 7 6 3
9 9 C 1.47505 * 126.94801 * 180.15217 * 8 7 6
10 10 O 1.21586 * 119.99608 * 0.28111 * 9 8 7
11 11 N 1.34772 * 120.00214 * 180.28230 * 9 8 7
12 12 C 1.46497 * 120.00016 * 179.97438 * 11 9 8
13 13 C 1.53002 * 109.47343 * 179.97438 * 12 11 9
14 14 C 1.52997 * 109.47430 * 175.02116 * 13 12 11
15 15 C 1.53003 * 115.55274 * 278.03842 * 14 13 12
16 16 N 1.46501 * 109.47053 * 303.89717 * 15 14 13
17 17 C 1.36937 * 120.00111 * 175.58965 * 16 15 14
18 18 H 1.08003 * 119.99621 * 0.02562 * 17 16 15
19 19 C 1.38810 * 119.99854 * 180.02562 * 17 16 15
20 20 N 1.31613 * 120.00406 * 359.97438 * 19 17 16
21 21 Si 1.86810 * 119.99657 * 180.02562 * 19 17 16
22 22 H 1.48506 * 109.46647 * 90.00197 * 21 19 17
23 23 H 1.48493 * 109.46933 * 209.99813 * 21 19 17
24 24 H 1.48494 * 109.47110 * 329.99983 * 21 19 17
25 25 C 1.52999 * 117.49928 * 132.32658 * 14 13 12
26 26 C 1.52997 * 60.00104 * 252.51291 * 25 14 13
27 27 O 1.34647 * 106.10573 * 0.36155 * 8 7 6
28 28 N 1.20880 * 111.46859 * 359.75596 * 27 8 7
29 29 H 1.09007 * 109.46954 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.47135 * 299.99491 * 1 2 3
31 31 H 1.08994 * 109.47656 * 59.99716 * 1 2 3
32 32 H 1.09001 * 109.47302 * 239.99980 * 2 1 3
33 33 H 1.08997 * 109.47533 * 119.99775 * 2 1 3
34 34 H 1.08996 * 109.47452 * 299.99766 * 5 3 2
35 35 H 1.08999 * 109.47438 * 60.00145 * 5 3 2
36 36 H 1.09001 * 109.46945 * 180.02562 * 5 3 2
37 37 H 1.08000 * 128.07418 * 0.02562 * 7 6 3
38 38 H 0.96996 * 119.99841 * 359.97438 * 11 9 8
39 39 H 1.09002 * 109.47444 * 299.99883 * 12 11 9
40 40 H 1.09002 * 109.47348 * 59.99696 * 12 11 9
41 41 H 1.08996 * 109.47307 * 295.02690 * 13 12 11
42 42 H 1.09001 * 109.46839 * 55.02329 * 13 12 11
43 43 H 1.08997 * 109.46888 * 63.89836 * 15 14 13
44 44 H 1.09000 * 109.47094 * 183.89943 * 15 14 13
45 45 H 0.97001 * 119.99717 * 355.59309 * 16 15 14
46 46 H 0.97000 * 120.00264 * 179.97438 * 20 19 17
47 47 H 1.09004 * 117.49658 * 0.02562 * 25 14 13
48 48 H 1.09001 * 117.49987 * 145.01865 * 25 14 13
49 49 H 1.09003 * 117.50006 * 252.50716 * 26 25 14
50 50 H 1.08999 * 117.50048 * 107.48894 * 26 25 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6053 1.9815 0.8419
5 6 1.6351 2.1265 -1.3073
6 6 3.5418 1.4443 0.1238
7 6 4.4758 1.3083 -0.9272
8 6 5.6890 1.3766 -0.2982
9 6 7.0203 1.2925 -0.9279
10 8 7.1154 1.1520 -2.1318
11 7 8.1310 1.3714 -0.1687
12 6 9.4531 1.2874 -0.7941
13 6 10.5347 1.4040 0.2818
14 6 11.9106 1.1924 -0.3530
15 6 12.3255 -0.2660 -0.5579
16 7 12.2690 -0.9744 0.7232
17 6 12.5120 -2.3212 0.7722
18 1 12.7457 -2.8610 -0.1336
19 6 12.4579 -2.9925 1.9860
20 7 12.1736 -2.3345 3.0898
21 14 12.7901 -4.8296 2.0528
22 1 14.2403 -5.0626 2.2716
23 1 12.0180 -5.4318 3.1692
24 1 12.3760 -5.4544 0.7710
25 6 13.0103 2.1984 -0.0074
26 6 12.3710 2.2112 -1.3974
27 8 5.4220 1.5315 1.0125
28 7 4.2317 1.5660 1.2204
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 2.0698 1.5876 -2.1491
35 1 0.5488 2.1252 -1.3969
36 1 1.9988 3.1541 -1.3075
37 1 4.2784 1.1821 -1.9815
38 1 8.0551 1.4839 0.7917
39 1 9.5523 0.3308 -1.3072
40 1 9.5673 2.0987 -1.5130
41 1 10.4918 2.3947 0.7342
42 1 10.3678 0.6471 1.0482
43 1 11.6465 -0.7409 -1.2660
44 1 13.3423 -0.3029 -0.9489
45 1 12.0594 -0.4895 1.5367
46 1 12.1354 -2.8037 3.9379
47 1 12.7537 3.0108 0.6725
48 1 14.0298 1.8213 0.0742
49 1 12.9699 1.8427 -2.2303
50 1 11.6937 3.0323 -1.6322
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001167411401.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:28:59
Heat of formation + Delta-G solvation = 21.329070 kcal
Electronic energy + Delta-G solvation = -28247.981954 eV
Core-core repulsion = 24278.286212 eV
Total energy + Delta-G solvation = -3969.695742 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-46.13886 -40.88994 -39.52467 -38.14845 -36.24655 -35.79973 -34.26359 -33.26536
-32.78179 -31.04226 -30.40682 -27.83485 -26.31516 -25.88343 -24.60658 -24.14758
-23.85477 -22.87485 -22.08990 -21.09110 -19.98022 -19.30923 -18.91705 -18.87525
-17.34600 -17.31382 -16.84635 -16.59292 -16.12584 -15.94839 -15.87103 -15.59886
-15.15296 -14.98088 -14.81632 -14.72189 -14.53542 -14.20075 -13.90579 -13.68575
-13.17307 -13.04106 -13.02549 -12.90928 -12.79844 -12.58452 -12.52484 -12.25906
-12.20611 -12.12331 -11.98014 -11.93862 -11.88498 -11.60802 -11.52872 -11.10227
-11.08120 -10.90765 -10.89265 -10.53433 -10.25000 -8.95943 -7.94283 -5.21322
-0.35067 0.94198 1.44535 1.46376 1.47340 1.55720 1.81365 2.09433
2.54692 2.88903 2.91440 3.32595 3.39257 3.76848 3.84694 3.85244
3.87246 3.96036 3.99076 4.04120 4.09279 4.12220 4.26566 4.40450
4.43350 4.49354 4.54168 4.59517 4.64226 4.72673 4.82541 4.87299
4.93713 4.98037 5.01366 5.06518 5.09995 5.11142 5.14211 5.16607
5.26795 5.30732 5.36500 5.36712 5.40270 5.47033 5.50213 6.18072
6.28417 6.79562 6.97388 7.35696 8.12629 8.37649 9.28942
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.010757 B = 0.002363 C = 0.002044
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2602.255073 B =11845.741375 C =13694.263697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.116 4.116
3 C -0.013 4.013
4 H 0.091 0.909
5 C -0.145 4.145
6 C 0.023 3.977
7 C -0.141 4.141
8 C -0.091 4.091
9 C 0.606 3.394
10 O -0.544 6.544
11 N -0.702 5.702
12 C 0.132 3.868
13 C -0.082 4.082
14 C -0.140 4.140
15 C 0.187 3.813
16 N -0.736 5.736
17 C -0.243 4.243
18 H 0.071 0.929
19 C -0.073 4.073
20 N -0.965 5.965
21 Si 0.968 3.032
22 H -0.287 1.287
23 H -0.295 1.295
24 H -0.273 1.273
25 C -0.166 4.166
26 C -0.149 4.149
27 O 0.109 5.891
28 N -0.365 5.365
29 H 0.059 0.941
30 H 0.057 0.943
31 H 0.073 0.927
32 H 0.070 0.930
33 H 0.048 0.952
34 H 0.067 0.933
35 H 0.088 0.912
36 H 0.058 0.942
37 H 0.199 0.801
38 H 0.417 0.583
39 H 0.053 0.947
40 H 0.086 0.914
41 H 0.091 0.909
42 H 0.059 0.941
43 H 0.019 0.981
44 H 0.014 0.986
45 H 0.377 0.623
46 H 0.251 0.749
47 H 0.107 0.893
48 H 0.082 0.918
49 H 0.098 0.902
50 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.271 13.889 -9.341 26.288
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.154 4.154
3 C -0.032 4.032
4 H 0.110 0.890
5 C -0.203 4.203
6 C -0.135 4.135
7 C -0.163 4.163
8 C -0.157 4.157
9 C 0.390 3.610
10 O -0.423 6.423
11 N -0.352 5.352
12 C 0.010 3.990
13 C -0.120 4.120
14 C -0.141 4.141
15 C 0.060 3.940
16 N -0.379 5.379
17 C -0.375 4.375
18 H 0.089 0.911
19 C -0.265 4.265
20 N -0.616 5.616
21 Si 0.797 3.203
22 H -0.214 1.214
23 H -0.222 1.222
24 H -0.198 1.198
25 C -0.203 4.203
26 C -0.186 4.186
27 O 0.038 5.962
28 N -0.067 5.067
29 H 0.079 0.921
30 H 0.076 0.924
31 H 0.092 0.908
32 H 0.088 0.912
33 H 0.067 0.933
34 H 0.086 0.914
35 H 0.107 0.893
36 H 0.077 0.923
37 H 0.217 0.783
38 H 0.253 0.747
39 H 0.071 0.929
40 H 0.104 0.896
41 H 0.109 0.891
42 H 0.078 0.922
43 H 0.037 0.963
44 H 0.032 0.968
45 H 0.210 0.790
46 H 0.060 0.940
47 H 0.126 0.874
48 H 0.100 0.900
49 H 0.116 0.884
50 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -20.440 13.775 -8.997 26.238
hybrid contribution 0.541 -1.274 0.480 1.465
sum -19.899 12.500 -8.517 24.995
Atomic orbital electron populations
1.21801 0.93443 1.02516 1.02872 1.21565 0.97643 0.94092 1.02130
1.19783 0.83288 0.98592 1.01533 0.89038 1.21912 1.03307 1.00257
0.94781 1.24119 1.00196 1.01563 0.87600 1.23089 0.88822 1.01450
1.02987 1.24160 0.97170 1.09679 0.84716 1.16590 0.81643 0.77119
0.85696 1.90853 1.86016 1.51287 1.14107 1.45915 1.05648 1.71563
1.12068 1.21372 0.79432 1.02245 0.95983 1.21138 0.90982 1.02921
0.96912 1.21384 0.95322 0.91498 1.05914 1.20254 0.96534 0.89430
0.87753 1.42465 1.84702 1.05490 1.05252 1.19594 1.38275 0.86242
0.93424 0.91137 1.25475 1.03604 1.02056 0.95371 1.69792 1.57403
1.36277 0.98153 0.85220 0.77341 0.80683 0.77023 1.21407 1.22173
1.19764 1.23059 0.97026 1.00772 0.99433 1.23069 1.03091 1.00146
0.92282 1.84982 1.19625 1.66931 1.24710 1.73731 0.89436 1.18390
1.25151 0.92146 0.92361 0.90809 0.91169 0.93325 0.91408 0.89334
0.92336 0.78343 0.74683 0.92856 0.89565 0.89063 0.92204 0.96310
0.96780 0.79024 0.94049 0.87438 0.89985 0.88399 0.86569
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.37 9.67 71.98 0.70 -0.67 16
2 C -0.12 -1.52 5.38 30.59 0.16 -1.36 16
3 C -0.01 -0.18 2.85 -11.54 -0.03 -0.21 16
4 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16
5 C -0.15 -1.37 8.57 71.98 0.62 -0.75 16
6 C 0.02 0.47 6.20 43.55 0.27 0.74 16
7 C -0.14 -2.90 10.13 22.68 0.23 -2.67 16
8 C -0.09 -2.21 7.29 24.38 0.18 -2.03 16
9 C 0.61 16.37 7.82 86.69 0.68 17.04 16
10 O -0.54 -17.55 16.91 -3.99 -0.07 -17.61 16
11 N -0.70 -17.40 5.55 -466.31 -2.59 -19.99 16
12 C 0.13 3.48 5.49 86.38 0.47 3.95 16
13 C -0.08 -2.24 5.20 30.59 0.16 -2.08 16
14 C -0.14 -4.18 1.65 -52.18 -0.09 -4.27 16
15 C 0.19 7.44 6.15 86.38 0.53 7.97 16
16 N -0.74 -37.03 5.23 -343.45 -1.80 -38.82 16
17 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16
18 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16
19 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16
20 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16
21 Si 0.97 46.64 29.55 68.60 2.03 48.67 16
22 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16
23 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16
24 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16
25 C -0.17 -4.33 9.87 30.59 0.30 -4.03 16
26 C -0.15 -3.35 9.57 30.59 0.29 -3.06 16
27 O 0.11 2.71 11.04 65.78 0.73 3.43 16
28 N -0.37 -9.07 12.04 -48.86 -0.59 -9.66 16
29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16
30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16
31 H 0.07 0.48 6.56 -2.39 -0.02 0.46 16
32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
34 H 0.07 0.59 7.49 -2.39 -0.02 0.57 16
35 H 0.09 0.53 6.57 -2.39 -0.02 0.52 16
36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
37 H 0.20 3.24 7.66 -2.91 -0.02 3.22 16
38 H 0.42 9.01 8.30 -92.71 -0.77 8.24 16
39 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16
40 H 0.09 2.01 7.72 -2.39 -0.02 1.99 16
41 H 0.09 2.01 7.93 -2.39 -0.02 1.99 16
42 H 0.06 2.05 6.94 -2.39 -0.02 2.04 16
43 H 0.02 0.78 7.96 -2.39 -0.02 0.76 16
44 H 0.01 0.58 8.10 -2.39 -0.02 0.56 16
45 H 0.38 19.93 6.80 -92.71 -0.63 19.30 16
46 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16
47 H 0.11 2.42 8.07 -2.38 -0.02 2.40 16
48 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16
49 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16
50 H 0.12 2.08 7.90 -2.39 -0.02 2.06 16
Total: -1.00 -69.49 413.28 3.33 -66.16
By element:
Atomic # 1 Polarization: 34.80 SS G_CDS: -0.45 Total: 34.35 kcal
Atomic # 6 Polarization: -13.78 SS G_CDS: 5.78 Total: -8.00 kcal
Atomic # 7 Polarization: -122.31 SS G_CDS: -4.69 Total: -127.00 kcal
Atomic # 8 Polarization: -14.84 SS G_CDS: 0.66 Total: -14.18 kcal
Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal
Total: -69.49 3.33 -66.16 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001167411401.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.490 kcal
(2) G-P(sol) polarization free energy of solvation -69.488 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.002 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.161 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds