Wall clock time and date at job start Tue Mar 31 2020 18:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.46923 * 2 1 4 4 N 1.46509 * 109.46694 * 119.99374 * 2 1 3 5 5 C 1.35531 * 125.67902 * 305.51282 * 4 2 1 6 6 C 1.35451 * 108.86571 * 180.26564 * 5 4 2 7 7 C 1.39828 * 107.87060 * 359.76914 * 6 5 4 8 8 C 1.37656 * 125.67309 * 125.38333 * 4 2 1 9 9 C 1.46676 * 126.23523 * 0.02562 * 8 4 2 10 10 O 1.21695 * 120.00068 * 24.14388 * 9 8 4 11 11 N 1.34771 * 119.99804 * 204.15108 * 9 8 4 12 12 C 1.47512 * 118.76120 * 359.05941 * 11 9 8 13 13 C 1.53560 * 111.03390 * 138.34593 * 12 11 9 14 14 C 1.51536 * 109.58141 * 320.02293 * 13 12 11 15 15 O 1.42152 * 108.75632 * 91.39897 * 14 13 12 16 16 C 1.38017 * 119.44195 * 272.77325 * 15 14 13 17 17 H 1.08997 * 109.46957 * 303.42355 * 16 15 14 18 18 C 1.53003 * 109.46838 * 183.42417 * 16 15 14 19 19 N 1.46503 * 109.46784 * 64.99448 * 18 16 15 20 20 C 1.36935 * 119.99993 * 179.72676 * 19 18 16 21 21 H 1.08004 * 119.99972 * 0.26554 * 20 19 18 22 22 C 1.38813 * 120.00060 * 180.27544 * 20 19 18 23 23 N 1.31612 * 120.00092 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99985 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47400 * 59.99437 * 24 22 20 26 26 H 1.48495 * 109.47284 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46974 * 299.99721 * 24 22 20 28 28 C 1.45129 * 118.75805 * 179.03583 * 11 9 8 29 29 H 1.09002 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47329 * 300.00005 * 1 2 3 31 31 H 1.09000 * 109.46943 * 60.00755 * 1 2 3 32 32 H 1.08994 * 109.47575 * 239.99508 * 2 1 3 33 33 H 1.09005 * 109.47615 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47301 * 299.99745 * 3 2 1 35 35 H 1.09002 * 109.47664 * 59.99639 * 3 2 1 36 36 H 1.07999 * 125.56663 * 0.02562 * 5 4 2 37 37 H 1.08009 * 126.06531 * 179.74945 * 6 5 4 38 38 H 1.08005 * 126.45833 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.16697 * 258.74779 * 12 11 9 40 40 H 1.09006 * 109.16426 * 17.94485 * 12 11 9 41 41 H 1.09001 * 109.45700 * 80.05630 * 13 12 11 42 42 H 1.09000 * 109.45469 * 199.98787 * 13 12 11 43 43 H 1.08998 * 109.59327 * 211.18166 * 14 13 12 44 44 H 1.09002 * 109.59258 * 331.62214 * 14 13 12 45 45 H 1.08997 * 109.47666 * 304.99292 * 18 16 15 46 46 H 1.09002 * 109.47080 * 184.99086 * 18 16 15 47 47 H 0.97002 * 120.00340 * 359.97438 * 19 18 16 48 48 H 0.97006 * 120.00290 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.45831 * 149.28204 * 28 11 9 50 50 H 1.09001 * 109.45624 * 29.32414 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.6788 -0.3935 2.4744 6 6 2.3300 -1.2391 3.3084 7 6 3.1032 -2.1026 2.5261 8 6 2.8963 -1.7506 1.2092 9 6 3.5061 -2.3856 0.0360 10 8 3.6229 -1.7612 -1.0020 11 7 3.9369 -3.6606 0.1076 12 6 3.8008 -4.3851 1.3853 13 6 3.3325 -5.8290 1.1529 14 6 2.2841 -5.8531 0.0591 15 8 2.9313 -6.0579 -1.1899 16 6 3.4057 -4.9701 -1.8945 17 1 2.5900 -4.2698 -2.0742 18 6 3.9786 -5.4401 -3.2332 19 7 2.9021 -5.9960 -4.0568 20 6 3.1770 -6.4780 -5.3087 21 1 4.1882 -6.4522 -5.6872 22 6 2.1560 -6.9996 -6.0913 23 7 0.9238 -7.0313 -5.6299 24 14 2.5310 -7.6564 -7.7993 25 1 3.5095 -8.7688 -7.6982 26 1 1.2790 -8.1530 -8.4246 27 1 3.1025 -6.5687 -8.6335 28 6 4.5167 -4.2692 -1.0755 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.0027 0.3919 2.7784 37 1 2.2641 -1.2452 4.3864 38 1 3.7417 -2.8960 2.8856 39 1 4.7651 -4.3990 1.8933 40 1 3.0739 -3.8698 2.0132 41 1 4.1825 -6.4428 0.8546 42 1 2.9051 -6.2247 2.0742 43 1 1.5814 -6.6656 0.2441 44 1 1.7509 -4.9026 0.0428 45 1 4.7335 -6.2062 -3.0565 46 1 4.4327 -4.5951 -3.7508 47 1 1.9939 -6.0195 -3.7167 48 1 0.2104 -7.3961 -6.1766 49 1 5.2654 -5.0028 -0.7767 50 1 4.9871 -3.4988 -1.6866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202066798.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:50 Heat of formation + Delta-G solvation = 7.150031 kcal Electronic energy + Delta-G solvation = -30513.364940 eV Core-core repulsion = 26543.054349 eV Total energy + Delta-G solvation = -3970.310591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86946 -40.10161 -38.20326 -36.16055 -35.22994 -34.54703 -32.84493 -30.88445 -30.25736 -30.08792 -28.35424 -27.61653 -26.49803 -25.26919 -23.33482 -22.61846 -22.05346 -20.99540 -20.91841 -20.60394 -18.72765 -17.50188 -17.12091 -16.43282 -16.38867 -16.15352 -15.86392 -15.09452 -15.00201 -14.61034 -14.57965 -14.30323 -14.18172 -13.70440 -13.53920 -13.15342 -13.10800 -12.95841 -12.79428 -12.65982 -12.53197 -12.42596 -12.38657 -12.15453 -11.85079 -11.63890 -11.53483 -11.32988 -11.12590 -10.88070 -10.73678 -10.70347 -10.21579 -10.03623 -9.86490 -9.63833 -9.35661 -8.91158 -8.79654 -8.56147 -8.32742 -6.81734 -5.66495 -2.94580 1.38161 2.36500 2.56643 3.05098 3.20924 3.50458 3.53906 3.55494 4.01143 4.32940 4.35596 4.63369 4.64024 4.70125 4.78130 4.83637 4.87702 5.06508 5.08413 5.16768 5.17758 5.26497 5.30824 5.36623 5.39859 5.43080 5.53941 5.59434 5.60072 5.64833 5.67931 5.68857 5.82564 5.86043 5.88188 6.00525 6.02183 6.04523 6.15666 6.36873 6.47057 6.63822 6.69906 6.82615 6.83994 7.04540 7.23402 7.76937 8.05149 8.08851 8.51738 9.63084 10.21658 10.57650 11.56422 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.003062 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.961933 B = 9143.118930 C =10180.140899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.110 3.890 3 C -0.156 4.156 4 N -0.399 5.399 5 C 0.015 3.985 6 C -0.209 4.209 7 C -0.160 4.160 8 C -0.043 4.043 9 C 0.578 3.422 10 O -0.541 6.541 11 N -0.593 5.593 12 C 0.075 3.925 13 C -0.167 4.167 14 C 0.074 3.926 15 O -0.369 6.369 16 C 0.090 3.910 17 H 0.050 0.950 18 C 0.166 3.834 19 N -0.726 5.726 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.082 3.918 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.164 0.836 37 H 0.141 0.859 38 H 0.156 0.844 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.028 0.972 46 H 0.035 0.965 47 H 0.386 0.614 48 H 0.254 0.746 49 H 0.085 0.915 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 13.892 22.703 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 C -0.214 4.214 4 N -0.072 5.072 5 C -0.121 4.121 6 C -0.233 4.233 7 C -0.186 4.186 8 C -0.157 4.157 9 C 0.368 3.632 10 O -0.419 6.419 11 N -0.325 5.325 12 C -0.047 4.047 13 C -0.205 4.205 14 C -0.003 4.003 15 O -0.287 6.287 16 C 0.030 3.970 17 H 0.068 0.932 18 C 0.038 3.962 19 N -0.370 5.370 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.041 4.041 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.181 0.819 37 H 0.159 0.841 38 H 0.173 0.827 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.052 0.948 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.104 0.896 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.108 14.151 21.573 25.886 hybrid contribution -0.157 -0.117 -0.509 0.545 sum 1.952 14.034 21.064 25.387 Atomic orbital electron populations 1.22174 0.93237 1.03333 1.03177 1.21837 0.95238 0.94444 0.87588 1.22107 1.02391 0.94053 1.02828 1.44216 1.32636 1.23738 1.06622 1.21884 1.04380 1.03187 0.82626 1.20821 1.03504 0.99779 0.99201 1.21721 1.03942 1.02081 0.90835 1.20080 1.03974 0.96722 0.94916 1.17194 0.78219 0.81641 0.86186 1.90803 1.56713 1.63156 1.31271 1.47571 1.60856 1.11548 1.12497 1.22992 1.02615 0.93707 0.85343 1.22511 1.01285 0.96104 1.00583 1.22102 0.93719 1.01319 0.83127 1.86430 1.75310 1.33976 1.32937 1.22258 0.94741 0.88198 0.91805 0.93196 1.20610 0.92326 0.96416 0.86851 1.42219 1.06305 1.73313 1.15165 1.19195 0.93936 1.32381 0.91336 0.91226 1.24730 0.95447 1.02185 0.98691 1.69667 0.99386 1.51801 1.37325 0.86258 0.76697 0.78759 0.84416 1.21296 1.21752 1.21327 1.22474 0.97002 0.98443 0.86201 0.91641 0.91910 0.90240 0.86057 0.91633 0.90459 0.92143 0.81895 0.84133 0.82674 0.91340 0.86694 0.90136 0.89656 0.89331 0.93614 0.95437 0.94786 0.77972 0.93591 0.89634 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.16 37.16 0.34 -1.04 16 2 C 0.11 1.17 3.39 -67.93 -0.23 0.94 16 3 C -0.16 -1.35 9.31 37.15 0.35 -1.01 16 4 N -0.40 -4.47 2.64 -105.81 -0.28 -4.75 16 5 C 0.01 0.13 10.34 -16.91 -0.17 -0.04 16 6 C -0.21 -1.85 10.81 -39.98 -0.43 -2.29 16 7 C -0.16 -1.60 8.42 -39.12 -0.33 -1.93 16 8 C -0.04 -0.54 6.49 -81.98 -0.53 -1.07 16 9 C 0.58 8.63 7.47 -12.86 -0.10 8.53 16 10 O -0.54 -9.71 14.28 5.19 0.07 -9.64 16 11 N -0.59 -7.91 2.19 -174.01 -0.38 -8.30 16 12 C 0.07 0.74 4.70 -3.20 -0.02 0.72 16 13 C -0.17 -1.71 5.78 -27.18 -0.16 -1.87 16 14 C 0.07 1.04 6.38 36.42 0.23 1.27 16 15 O -0.37 -6.78 9.38 -26.54 -0.25 -7.03 16 16 C 0.09 1.67 2.68 -25.78 -0.07 1.60 16 17 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 18 C 0.17 3.62 5.92 -4.04 -0.02 3.60 16 19 N -0.73 -19.76 5.54 -59.90 -0.33 -20.09 16 20 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 21 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -29.34 13.06 55.49 0.72 -28.62 16 24 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 C 0.08 1.23 4.87 -3.83 -0.02 1.21 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.43 7.69 -51.93 -0.40 0.03 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.12 1.66 5.85 -51.93 -0.30 1.36 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.43 8.02 -51.93 -0.42 0.01 16 36 H 0.16 1.01 7.89 -52.49 -0.41 0.60 16 37 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.16 1.23 5.50 -52.48 -0.29 0.94 16 39 H 0.07 0.55 7.97 -51.93 -0.41 0.14 16 40 H 0.12 1.04 3.82 -51.93 -0.20 0.84 16 41 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.66 7.40 -51.93 -0.38 0.28 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.39 11.21 7.65 -40.82 -0.31 10.89 16 48 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 49 H 0.09 1.15 8.11 -51.93 -0.42 0.73 16 50 H 0.09 1.50 7.26 -51.93 -0.38 1.12 16 LS Contribution 391.80 15.07 5.90 5.90 Total: -1.00 -35.23 391.80 -9.09 -44.31 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.12 Total: 9.12 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.41 Total: 0.96 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.27 Total: -61.76 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.17 Total: -16.66 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.23 -9.09 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202066798.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.464 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds