Wall clock time and date at job start Tue Mar 31 2020 18:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.46923 * 2 1 4 4 N 1.46509 * 109.46694 * 119.99374 * 2 1 3 5 5 C 1.35531 * 125.67902 * 305.51282 * 4 2 1 6 6 C 1.35451 * 108.86571 * 180.26564 * 5 4 2 7 7 C 1.39828 * 107.87060 * 359.76914 * 6 5 4 8 8 C 1.37656 * 125.67309 * 125.38333 * 4 2 1 9 9 C 1.46676 * 126.23523 * 0.02562 * 8 4 2 10 10 O 1.21695 * 120.00068 * 24.14388 * 9 8 4 11 11 N 1.34771 * 119.99804 * 204.15108 * 9 8 4 12 12 C 1.47512 * 118.76120 * 359.05941 * 11 9 8 13 13 C 1.53560 * 111.03390 * 138.34593 * 12 11 9 14 14 C 1.51536 * 109.58141 * 320.02293 * 13 12 11 15 15 O 1.42152 * 108.75632 * 91.39897 * 14 13 12 16 16 C 1.38017 * 119.44195 * 272.77325 * 15 14 13 17 17 H 1.08997 * 109.46957 * 303.42355 * 16 15 14 18 18 C 1.53003 * 109.46838 * 183.42417 * 16 15 14 19 19 N 1.46503 * 109.46784 * 64.99448 * 18 16 15 20 20 C 1.36935 * 119.99993 * 179.72676 * 19 18 16 21 21 H 1.08004 * 119.99972 * 0.26554 * 20 19 18 22 22 C 1.38813 * 120.00060 * 180.27544 * 20 19 18 23 23 N 1.31612 * 120.00092 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99985 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47400 * 59.99437 * 24 22 20 26 26 H 1.48495 * 109.47284 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46974 * 299.99721 * 24 22 20 28 28 C 1.45129 * 118.75805 * 179.03583 * 11 9 8 29 29 H 1.09002 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47329 * 300.00005 * 1 2 3 31 31 H 1.09000 * 109.46943 * 60.00755 * 1 2 3 32 32 H 1.08994 * 109.47575 * 239.99508 * 2 1 3 33 33 H 1.09005 * 109.47615 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47301 * 299.99745 * 3 2 1 35 35 H 1.09002 * 109.47664 * 59.99639 * 3 2 1 36 36 H 1.07999 * 125.56663 * 0.02562 * 5 4 2 37 37 H 1.08009 * 126.06531 * 179.74945 * 6 5 4 38 38 H 1.08005 * 126.45833 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.16697 * 258.74779 * 12 11 9 40 40 H 1.09006 * 109.16426 * 17.94485 * 12 11 9 41 41 H 1.09001 * 109.45700 * 80.05630 * 13 12 11 42 42 H 1.09000 * 109.45469 * 199.98787 * 13 12 11 43 43 H 1.08998 * 109.59327 * 211.18166 * 14 13 12 44 44 H 1.09002 * 109.59258 * 331.62214 * 14 13 12 45 45 H 1.08997 * 109.47666 * 304.99292 * 18 16 15 46 46 H 1.09002 * 109.47080 * 184.99086 * 18 16 15 47 47 H 0.97002 * 120.00340 * 359.97438 * 19 18 16 48 48 H 0.97006 * 120.00290 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.45831 * 149.28204 * 28 11 9 50 50 H 1.09001 * 109.45624 * 29.32414 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.6788 -0.3935 2.4744 6 6 2.3300 -1.2391 3.3084 7 6 3.1032 -2.1026 2.5261 8 6 2.8963 -1.7506 1.2092 9 6 3.5061 -2.3856 0.0360 10 8 3.6229 -1.7612 -1.0020 11 7 3.9369 -3.6606 0.1076 12 6 3.8008 -4.3851 1.3853 13 6 3.3325 -5.8290 1.1529 14 6 2.2841 -5.8531 0.0591 15 8 2.9313 -6.0579 -1.1899 16 6 3.4057 -4.9701 -1.8945 17 1 2.5900 -4.2698 -2.0742 18 6 3.9786 -5.4401 -3.2332 19 7 2.9021 -5.9960 -4.0568 20 6 3.1770 -6.4780 -5.3087 21 1 4.1882 -6.4522 -5.6872 22 6 2.1560 -6.9996 -6.0913 23 7 0.9238 -7.0313 -5.6299 24 14 2.5310 -7.6564 -7.7993 25 1 3.5095 -8.7688 -7.6982 26 1 1.2790 -8.1530 -8.4246 27 1 3.1025 -6.5687 -8.6335 28 6 4.5167 -4.2692 -1.0755 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.0027 0.3919 2.7784 37 1 2.2641 -1.2452 4.3864 38 1 3.7417 -2.8960 2.8856 39 1 4.7651 -4.3990 1.8933 40 1 3.0739 -3.8698 2.0132 41 1 4.1825 -6.4428 0.8546 42 1 2.9051 -6.2247 2.0742 43 1 1.5814 -6.6656 0.2441 44 1 1.7509 -4.9026 0.0428 45 1 4.7335 -6.2062 -3.0565 46 1 4.4327 -4.5951 -3.7508 47 1 1.9939 -6.0195 -3.7167 48 1 0.2104 -7.3961 -6.1766 49 1 5.2654 -5.0028 -0.7767 50 1 4.9871 -3.4988 -1.6866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202066798.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:49 Heat of formation + Delta-G solvation = -15.527427 kcal Electronic energy + Delta-G solvation = -30514.348309 eV Core-core repulsion = 26543.054349 eV Total energy + Delta-G solvation = -3971.293959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.70649 -41.22196 -39.45631 -37.22566 -36.51426 -36.00140 -34.37698 -32.70873 -31.28867 -30.83590 -29.75810 -28.31212 -27.60398 -26.83088 -24.92971 -23.64979 -23.19575 -22.46371 -21.84567 -21.53448 -19.60103 -19.27964 -18.45513 -17.69224 -17.62848 -17.23363 -16.98277 -16.48417 -16.17189 -15.85001 -15.57354 -15.48529 -15.18813 -15.04062 -14.79514 -14.74092 -14.48846 -13.94786 -13.81110 -13.67746 -13.56447 -13.47806 -13.17887 -13.14255 -13.06934 -12.88581 -12.74044 -12.62584 -12.38889 -12.32972 -12.15761 -12.10304 -11.89025 -11.72826 -11.46659 -11.00315 -10.98116 -10.60526 -9.78861 -9.59368 -9.13143 -9.04003 -7.95516 -5.25965 0.49404 1.45078 1.49350 1.50253 1.56200 1.84993 2.14046 2.25319 2.55193 2.67872 3.37589 3.42554 3.58605 3.59698 3.82477 3.89009 3.96321 4.04751 4.09075 4.09567 4.15296 4.28978 4.33846 4.39161 4.42198 4.47159 4.50045 4.54751 4.63349 4.64987 4.69498 4.74897 4.81840 4.84837 4.88096 4.97976 5.05457 5.09934 5.11719 5.16993 5.21086 5.28881 5.44981 5.46942 5.86119 6.04474 6.21022 6.24428 6.36487 6.69723 7.01541 7.30488 8.03792 8.29686 9.28244 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.003062 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.961933 B = 9143.118930 C =10180.140899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.106 3.894 3 C -0.148 4.148 4 N -0.409 5.409 5 C 0.022 3.978 6 C -0.213 4.213 7 C -0.145 4.145 8 C -0.088 4.088 9 C 0.569 3.431 10 O -0.588 6.588 11 N -0.592 5.592 12 C 0.072 3.928 13 C -0.155 4.155 14 C 0.066 3.934 15 O -0.395 6.395 16 C 0.107 3.893 17 H 0.014 0.986 18 C 0.164 3.836 19 N -0.741 5.741 20 C -0.251 4.251 21 H 0.079 0.921 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.981 3.019 25 H -0.275 1.275 26 H -0.293 1.293 27 H -0.277 1.277 28 C 0.096 3.904 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.195 0.805 37 H 0.170 0.830 38 H 0.178 0.822 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.033 0.967 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.372 0.628 48 H 0.252 0.748 49 H 0.108 0.892 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 14.222 25.605 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 C -0.205 4.205 4 N -0.082 5.082 5 C -0.114 4.114 6 C -0.236 4.236 7 C -0.171 4.171 8 C -0.200 4.200 9 C 0.361 3.639 10 O -0.470 6.470 11 N -0.323 5.323 12 C -0.048 4.048 13 C -0.193 4.193 14 C -0.010 4.010 15 O -0.314 6.314 16 C 0.047 3.953 17 H 0.032 0.968 18 C 0.037 3.963 19 N -0.383 5.383 20 C -0.382 4.382 21 H 0.097 0.903 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.809 3.191 25 H -0.200 1.200 26 H -0.219 1.219 27 H -0.203 1.203 28 C -0.028 4.028 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.212 0.788 37 H 0.188 0.812 38 H 0.195 0.805 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.096 0.904 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.204 0.796 48 H 0.060 0.940 49 H 0.127 0.873 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.704 14.470 24.524 28.603 hybrid contribution -0.368 -0.188 -1.303 1.367 sum 2.336 14.282 23.222 27.362 Atomic orbital electron populations 1.22130 0.91628 1.02554 1.04842 1.21780 0.96434 0.94923 0.86403 1.22051 1.00976 0.93040 1.04464 1.44357 1.32757 1.23679 1.07435 1.22545 1.03886 1.03393 0.81549 1.21222 1.02770 0.99056 1.00552 1.22063 1.03280 1.02112 0.89638 1.19991 1.06446 0.98714 0.94890 1.17706 0.77759 0.81937 0.86514 1.90768 1.58599 1.64422 1.33250 1.47655 1.60258 1.11383 1.13004 1.23298 1.04618 0.93012 0.83837 1.22447 0.99924 0.96511 1.00430 1.22375 0.95008 1.00975 0.82611 1.86351 1.75961 1.34076 1.35016 1.21856 0.94663 0.87510 0.91263 0.96821 1.20745 0.91304 0.96185 0.88105 1.42424 1.06827 1.73648 1.15409 1.19662 0.94419 1.31877 0.92269 0.90347 1.25671 0.95262 1.02989 1.03036 1.69851 1.00356 1.53074 1.38880 0.85109 0.76499 0.78340 0.79171 1.20046 1.21926 1.20286 1.22165 0.95833 0.98168 0.86671 0.93572 0.89314 0.89463 0.90273 0.93716 0.89514 0.89745 0.78806 0.81224 0.80462 0.88315 0.85518 0.90364 0.85967 0.88570 0.94887 0.94631 0.94703 0.79629 0.93970 0.87338 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.16 71.98 0.66 -1.92 16 2 C 0.11 2.33 3.39 44.99 0.15 2.48 16 3 C -0.15 -2.52 9.31 71.98 0.67 -1.85 16 4 N -0.41 -8.92 2.64 -488.67 -1.29 -10.21 16 5 C 0.02 0.33 10.34 83.48 0.86 1.19 16 6 C -0.21 -3.00 10.81 22.01 0.24 -2.76 16 7 C -0.14 -2.52 8.42 22.57 0.19 -2.33 16 8 C -0.09 -2.18 6.49 40.35 0.26 -1.92 16 9 C 0.57 17.75 7.47 86.45 0.65 18.40 16 10 O -0.59 -23.03 14.28 -4.33 -0.06 -23.09 16 11 N -0.59 -15.85 2.19 -822.67 -1.80 -17.65 16 12 C 0.07 1.25 4.70 86.37 0.41 1.66 16 13 C -0.16 -2.81 5.78 30.30 0.18 -2.64 16 14 C 0.07 1.85 6.38 71.50 0.46 2.30 16 15 O -0.40 -14.98 9.38 -117.89 -1.11 -16.09 16 16 C 0.11 4.20 2.68 31.21 0.08 4.28 16 17 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 18 C 0.16 7.44 5.92 86.38 0.51 7.95 16 19 N -0.74 -42.06 5.54 -343.44 -1.90 -43.96 16 20 C -0.25 -15.07 9.99 84.03 0.84 -14.23 16 21 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 22 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 23 N -0.97 -62.88 13.06 21.65 0.28 -62.59 16 24 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 28 C 0.10 2.95 4.87 87.25 0.43 3.38 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.00 7.69 -2.39 -0.02 0.98 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.43 5.85 -2.39 -0.01 2.41 16 33 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.08 1.01 8.02 -2.39 -0.02 0.99 16 36 H 0.20 1.57 7.89 -2.91 -0.02 1.55 16 37 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.18 2.12 5.50 -2.91 -0.02 2.10 16 39 H 0.10 1.19 7.97 -2.39 -0.02 1.17 16 40 H 0.13 1.93 3.82 -2.38 -0.01 1.92 16 41 H 0.08 1.52 8.01 -2.39 -0.02 1.50 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.03 0.99 7.40 -2.39 -0.02 0.97 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.37 22.81 7.65 -92.71 -0.71 22.10 16 48 H 0.25 15.66 8.31 -92.70 -0.77 14.89 16 49 H 0.11 2.82 8.11 -2.39 -0.02 2.80 16 50 H 0.08 2.72 7.26 -2.39 -0.02 2.70 16 Total: -1.00 -81.43 391.80 3.42 -78.01 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: 0.23 Total: 35.59 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 7.04 Total: 9.74 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -4.71 Total: -134.42 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -1.17 Total: -39.18 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -81.43 3.42 -78.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202066798.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.484 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds