Wall clock time and date at job start Tue Mar 31 2020 18:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 H 1.09006 * 109.46805 * 55.00128 * 3 2 1 5 5 C 1.52996 * 109.47672 * 295.00527 * 3 2 1 6 6 C 1.50705 * 109.47597 * 174.99856 * 3 2 1 7 7 C 1.41262 * 126.70201 * 85.00099 * 6 3 2 8 8 C 1.36822 * 103.84707 * 179.97438 * 7 6 3 9 9 C 1.47512 * 126.94116 * 180.02562 * 8 7 6 10 10 O 1.21573 * 120.00212 * 7.19842 * 9 8 7 11 11 N 1.34773 * 119.99475 * 187.19962 * 9 8 7 12 12 C 1.46931 * 120.63497 * 6.71063 * 11 9 8 13 13 C 1.53620 * 108.54730 * 126.36853 * 12 11 9 14 14 C 1.53039 * 109.23904 * 54.85538 * 13 12 11 15 15 C 1.53002 * 109.44810 * 178.49872 * 14 13 12 16 16 N 1.46495 * 109.47178 * 295.06557 * 15 14 13 17 17 C 1.36942 * 120.00072 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99926 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99853 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00363 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47192 * 89.99955 * 21 19 17 23 23 H 1.48500 * 109.47047 * 209.99972 * 21 19 17 24 24 H 1.48496 * 109.47083 * 329.99496 * 21 19 17 25 25 C 1.53041 * 109.54148 * 298.51276 * 14 13 12 26 26 C 1.46932 * 120.62837 * 186.98868 * 11 9 8 27 27 O 1.34643 * 106.10850 * 359.97438 * 8 7 6 28 28 N 1.20878 * 111.47167 * 0.02562 * 27 8 7 29 29 H 1.09003 * 109.47064 * 299.99859 * 1 2 3 30 30 H 1.08996 * 109.47189 * 59.99661 * 1 2 3 31 31 H 1.09002 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47207 * 240.00593 * 2 1 3 33 33 H 1.09005 * 109.47315 * 120.00166 * 2 1 3 34 34 H 1.09006 * 109.46882 * 59.99064 * 5 3 2 35 35 H 1.08992 * 109.47799 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.46694 * 300.00039 * 5 3 2 37 37 H 1.08004 * 128.07304 * 359.97438 * 7 6 3 38 38 H 1.09001 * 109.58488 * 246.20200 * 12 11 9 39 39 H 1.08999 * 109.58074 * 6.62150 * 12 11 9 40 40 H 1.09006 * 109.63200 * 294.86907 * 13 12 11 41 41 H 1.08997 * 109.43621 * 174.72467 * 13 12 11 42 42 H 1.09001 * 109.46022 * 58.53273 * 14 13 12 43 43 H 1.09004 * 109.46906 * 55.06230 * 15 14 13 44 44 H 1.09001 * 109.47278 * 175.05750 * 15 14 13 45 45 H 0.97006 * 120.00273 * 359.97438 * 16 15 14 46 46 H 0.96997 * 120.00154 * 180.02562 * 20 19 17 47 47 H 1.09007 * 109.49699 * 301.41712 * 25 14 13 48 48 H 1.08997 * 109.52466 * 181.33514 * 25 14 13 49 49 H 1.08993 * 109.58702 * 353.37508 * 26 11 9 50 50 H 1.09004 * 109.58495 * 113.65539 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5419 1.4444 0.1239 7 6 4.4760 1.3140 -0.9278 8 6 5.6890 1.3779 -0.2983 9 6 7.0203 1.2942 -0.9281 10 8 7.1200 1.2851 -2.1397 11 7 8.1260 1.2277 -0.1604 12 6 8.0173 1.0898 1.2984 13 6 8.8485 -0.1251 1.7377 14 6 10.2824 0.0335 1.2267 15 6 11.1240 -1.1560 1.6934 16 7 11.2273 -1.1378 3.1546 17 6 11.9383 -2.1122 3.8029 18 1 12.4226 -2.8942 3.2371 19 6 12.0366 -2.0946 5.1874 20 7 11.4468 -1.1412 5.8771 21 14 13.0060 -3.4241 6.0719 22 1 14.4202 -2.9939 6.2141 23 1 12.4201 -3.6517 7.4173 24 1 12.9482 -4.6836 5.2874 25 6 10.2779 0.0861 -0.3028 26 6 9.4630 1.2978 -0.7657 27 8 5.4221 1.5337 1.0122 28 7 4.2318 1.5674 1.2203 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5488 2.1253 -1.3968 35 1 1.9981 3.1544 -1.3070 36 1 2.0698 1.5877 -2.1490 37 1 4.2785 1.1923 -1.9827 38 1 8.3987 1.9903 1.7799 39 1 6.9736 0.9394 1.5744 40 1 8.4136 -1.0352 1.3243 41 1 8.8548 -0.1860 2.8259 42 1 10.7082 0.9564 1.6206 43 1 10.6497 -2.0841 1.3742 44 1 12.1209 -1.0890 1.2577 45 1 10.7926 -0.4352 3.6629 46 1 11.5158 -1.1287 6.8445 47 1 9.8295 -0.8260 -0.6969 48 1 11.3013 0.1752 -0.6672 49 1 9.3734 1.2846 -1.8519 50 1 9.9588 2.2161 -0.4511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206528462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:38 Heat of formation + Delta-G solvation = 25.589691 kcal Electronic energy + Delta-G solvation = -29103.850105 eV Core-core repulsion = 25134.339118 eV Total energy + Delta-G solvation = -3969.510987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.27669 -40.25980 -37.88557 -37.48854 -35.05916 -33.54652 -33.10635 -32.22127 -30.90676 -30.33530 -29.89451 -26.97637 -25.75847 -24.67587 -23.56182 -23.18143 -23.05192 -21.68068 -21.07533 -20.22964 -19.35816 -18.01033 -17.76894 -17.12241 -16.61994 -16.32595 -15.41358 -15.32372 -14.99436 -14.75821 -14.37086 -14.21909 -14.16685 -13.88873 -13.73086 -13.59371 -13.37890 -13.16998 -12.75855 -12.57857 -12.40064 -12.26436 -12.23931 -11.86467 -11.84107 -11.62046 -11.40100 -11.18351 -11.06294 -11.00542 -10.84183 -10.54377 -10.44354 -10.36080 -10.32853 -10.14517 -9.97896 -9.93023 -9.65445 -8.87170 -8.79277 -6.91340 -5.76621 -3.04819 0.58311 1.79017 2.33100 2.73755 2.95715 3.43682 3.48969 3.50522 3.62335 4.02359 4.40845 4.48352 4.58725 4.63635 4.67480 4.80082 4.89659 4.96978 5.01711 5.03319 5.06282 5.10322 5.13932 5.24097 5.32618 5.44555 5.52494 5.53439 5.54294 5.57394 5.60021 5.60957 5.70383 5.78583 5.86764 5.89500 5.91093 5.91618 6.08630 6.16242 6.25286 6.33519 6.44887 6.60030 6.78911 6.90556 7.06931 7.65967 7.70518 7.92424 8.42741 9.53882 10.11893 10.46448 11.46322 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.002354 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.777322 B =11890.828706 C =13299.610647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.013 4.013 4 H 0.090 0.910 5 C -0.148 4.148 6 C 0.019 3.981 7 C -0.149 4.149 8 C -0.078 4.078 9 C 0.603 3.397 10 O -0.522 6.522 11 N -0.592 5.592 12 C 0.094 3.906 13 C -0.123 4.123 14 C -0.095 4.095 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.126 4.126 26 C 0.113 3.887 27 O 0.119 5.881 28 N -0.345 5.345 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.181 0.819 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.165 7.981 -16.226 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.109 0.891 5 C -0.205 4.205 6 C -0.139 4.139 7 C -0.172 4.172 8 C -0.144 4.144 9 C 0.388 3.612 10 O -0.399 6.399 11 N -0.324 5.324 12 C -0.028 4.028 13 C -0.161 4.161 14 C -0.114 4.114 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.165 4.165 26 C -0.008 4.008 27 O 0.049 5.951 28 N -0.047 5.047 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.198 0.802 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.316 7.980 -15.548 26.048 hybrid contribution 0.502 -0.631 0.125 0.816 sum -18.814 7.349 -15.423 25.413 Atomic orbital electron populations 1.21816 0.94956 1.02090 1.02113 1.21574 0.96365 0.94696 1.02891 1.19622 0.85314 0.98008 1.00300 0.89125 1.21900 1.02074 1.00629 0.95917 1.23595 0.98830 1.03186 0.88315 1.22774 0.89446 1.02901 1.02029 1.24219 0.97188 1.08591 0.84396 1.16651 0.81147 0.77527 0.85873 1.90837 1.85106 1.51464 1.12472 1.48102 1.05816 1.70070 1.08420 1.22404 1.02297 1.00139 0.77967 1.22001 0.94714 0.96505 1.02900 1.21336 0.95591 1.00599 0.93895 1.20664 0.95687 0.94165 0.86418 1.42376 1.62967 1.32392 0.99907 1.19227 1.24258 1.03906 0.89569 0.91268 1.24729 1.01209 0.98754 0.96345 1.69649 1.48328 1.34207 1.06083 0.86198 0.79576 0.81307 0.79168 1.21756 1.21783 1.20810 1.21922 1.00212 0.97850 0.96499 1.21770 0.80609 0.99052 0.99393 1.85150 1.18985 1.66444 1.24544 1.73736 0.89802 1.16820 1.24332 0.92516 0.92204 0.92349 0.91342 0.91532 0.91153 0.92180 0.91905 0.80183 0.90258 0.88652 0.91695 0.88976 0.90762 0.96417 0.96306 0.78243 0.93526 0.91384 0.90277 0.88868 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.67 37.16 0.36 -0.47 16 2 C -0.12 -0.82 5.38 -26.73 -0.14 -0.96 16 3 C -0.01 -0.10 2.85 -91.77 -0.26 -0.36 16 4 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.15 -0.85 8.56 37.16 0.32 -0.53 16 6 C 0.02 0.20 6.20 -82.16 -0.51 -0.31 16 7 C -0.15 -1.56 10.13 -38.95 -0.39 -1.96 16 8 C -0.08 -0.95 6.90 -36.32 -0.25 -1.20 16 9 C 0.60 7.97 7.68 -12.48 -0.10 7.87 16 10 O -0.52 -7.93 16.35 5.30 0.09 -7.84 16 11 N -0.59 -7.33 2.97 -173.74 -0.52 -7.84 16 12 C 0.09 1.16 6.18 -3.48 -0.02 1.14 16 13 C -0.12 -1.80 5.26 -26.39 -0.14 -1.94 16 14 C -0.10 -1.43 2.19 -90.58 -0.20 -1.63 16 15 C 0.16 3.08 5.65 -4.04 -0.02 3.05 16 16 N -0.73 -18.08 5.32 -59.91 -0.32 -18.39 16 17 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.13 -1.54 5.36 -26.61 -0.14 -1.69 16 26 C 0.11 1.29 6.44 -3.71 -0.02 1.26 16 27 O 0.12 1.50 7.93 15.55 0.12 1.62 16 28 N -0.35 -4.33 12.04 33.52 0.40 -3.93 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.31 6.57 -51.93 -0.34 -0.03 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.34 7.48 -51.93 -0.39 -0.05 16 37 H 0.18 1.54 7.66 -52.48 -0.40 1.14 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.17 4.26 -52.61 -0.22 0.94 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.55 7.15 -51.93 -0.37 1.18 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 9.83 6.84 -40.82 -0.28 9.55 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -31.90 396.13 -8.50 -40.40 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.17 Total: 4.91 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.77 Total: -5.00 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.29 Total: -57.41 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: 0.21 Total: -6.22 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.90 -8.50 -40.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206528462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.989 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds