Wall clock time and date at job start Tue Mar 31 2020 18:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 H 1.09006 * 109.46805 * 55.00128 * 3 2 1 5 5 C 1.52996 * 109.47672 * 295.00527 * 3 2 1 6 6 C 1.50705 * 109.47597 * 174.99856 * 3 2 1 7 7 C 1.41262 * 126.70201 * 85.00099 * 6 3 2 8 8 C 1.36822 * 103.84707 * 179.97438 * 7 6 3 9 9 C 1.47512 * 126.94116 * 180.02562 * 8 7 6 10 10 O 1.21573 * 120.00212 * 7.19842 * 9 8 7 11 11 N 1.34773 * 119.99475 * 187.19962 * 9 8 7 12 12 C 1.46931 * 120.63497 * 6.71063 * 11 9 8 13 13 C 1.53620 * 108.54730 * 126.36853 * 12 11 9 14 14 C 1.53039 * 109.23904 * 54.85538 * 13 12 11 15 15 C 1.53002 * 109.44810 * 178.49872 * 14 13 12 16 16 N 1.46495 * 109.47178 * 295.06557 * 15 14 13 17 17 C 1.36942 * 120.00072 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99926 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99853 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00363 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47192 * 89.99955 * 21 19 17 23 23 H 1.48500 * 109.47047 * 209.99972 * 21 19 17 24 24 H 1.48496 * 109.47083 * 329.99496 * 21 19 17 25 25 C 1.53041 * 109.54148 * 298.51276 * 14 13 12 26 26 C 1.46932 * 120.62837 * 186.98868 * 11 9 8 27 27 O 1.34643 * 106.10850 * 359.97438 * 8 7 6 28 28 N 1.20878 * 111.47167 * 0.02562 * 27 8 7 29 29 H 1.09003 * 109.47064 * 299.99859 * 1 2 3 30 30 H 1.08996 * 109.47189 * 59.99661 * 1 2 3 31 31 H 1.09002 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47207 * 240.00593 * 2 1 3 33 33 H 1.09005 * 109.47315 * 120.00166 * 2 1 3 34 34 H 1.09006 * 109.46882 * 59.99064 * 5 3 2 35 35 H 1.08992 * 109.47799 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.46694 * 300.00039 * 5 3 2 37 37 H 1.08004 * 128.07304 * 359.97438 * 7 6 3 38 38 H 1.09001 * 109.58488 * 246.20200 * 12 11 9 39 39 H 1.08999 * 109.58074 * 6.62150 * 12 11 9 40 40 H 1.09006 * 109.63200 * 294.86907 * 13 12 11 41 41 H 1.08997 * 109.43621 * 174.72467 * 13 12 11 42 42 H 1.09001 * 109.46022 * 58.53273 * 14 13 12 43 43 H 1.09004 * 109.46906 * 55.06230 * 15 14 13 44 44 H 1.09001 * 109.47278 * 175.05750 * 15 14 13 45 45 H 0.97006 * 120.00273 * 359.97438 * 16 15 14 46 46 H 0.96997 * 120.00154 * 180.02562 * 20 19 17 47 47 H 1.09007 * 109.49699 * 301.41712 * 25 14 13 48 48 H 1.08997 * 109.52466 * 181.33514 * 25 14 13 49 49 H 1.08993 * 109.58702 * 353.37508 * 26 11 9 50 50 H 1.09004 * 109.58495 * 113.65539 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5419 1.4444 0.1239 7 6 4.4760 1.3140 -0.9278 8 6 5.6890 1.3779 -0.2983 9 6 7.0203 1.2942 -0.9281 10 8 7.1200 1.2851 -2.1397 11 7 8.1260 1.2277 -0.1604 12 6 8.0173 1.0898 1.2984 13 6 8.8485 -0.1251 1.7377 14 6 10.2824 0.0335 1.2267 15 6 11.1240 -1.1560 1.6934 16 7 11.2273 -1.1378 3.1546 17 6 11.9383 -2.1122 3.8029 18 1 12.4226 -2.8942 3.2371 19 6 12.0366 -2.0946 5.1874 20 7 11.4468 -1.1412 5.8771 21 14 13.0060 -3.4241 6.0719 22 1 14.4202 -2.9939 6.2141 23 1 12.4201 -3.6517 7.4173 24 1 12.9482 -4.6836 5.2874 25 6 10.2779 0.0861 -0.3028 26 6 9.4630 1.2978 -0.7657 27 8 5.4221 1.5337 1.0122 28 7 4.2318 1.5674 1.2203 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5488 2.1253 -1.3968 35 1 1.9981 3.1544 -1.3070 36 1 2.0698 1.5877 -2.1490 37 1 4.2785 1.1923 -1.9827 38 1 8.3987 1.9903 1.7799 39 1 6.9736 0.9394 1.5744 40 1 8.4136 -1.0352 1.3243 41 1 8.8548 -0.1860 2.8259 42 1 10.7082 0.9564 1.6206 43 1 10.6497 -2.0841 1.3742 44 1 12.1209 -1.0890 1.2577 45 1 10.7926 -0.4352 3.6629 46 1 11.5158 -1.1287 6.8445 47 1 9.8295 -0.8260 -0.6969 48 1 11.3013 0.1752 -0.6672 49 1 9.3734 1.2846 -1.8519 50 1 9.9588 2.2161 -0.4511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206528462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:37 Heat of formation + Delta-G solvation = 7.390389 kcal Electronic energy + Delta-G solvation = -29104.639286 eV Core-core repulsion = 25134.339118 eV Total energy + Delta-G solvation = -3970.300168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.16418 -41.31218 -39.05885 -38.14118 -36.63333 -34.67991 -34.24826 -33.36709 -32.15427 -31.88095 -30.40733 -28.42584 -26.34829 -26.09306 -24.74637 -24.43264 -24.00409 -22.87312 -22.00967 -21.26363 -20.32992 -19.16795 -18.91126 -18.67441 -17.63270 -17.29210 -16.71941 -16.32340 -15.94409 -15.77344 -15.64318 -15.41822 -15.32426 -15.08081 -14.85973 -14.61893 -14.52965 -14.13090 -13.91033 -13.68632 -13.50011 -13.13774 -13.02986 -12.92247 -12.87383 -12.75283 -12.51952 -12.25267 -12.19686 -12.16986 -11.96927 -11.94123 -11.69002 -11.67126 -11.58944 -11.34475 -11.28942 -11.07521 -10.91035 -10.85331 -9.83481 -8.96979 -7.94209 -5.21981 -0.34989 0.95743 1.39088 1.47549 1.48772 1.57158 1.74443 2.00173 2.56624 2.88356 3.13489 3.39310 3.62043 3.75398 3.79009 3.85166 3.88037 3.96787 4.03208 4.07750 4.10208 4.29997 4.32274 4.38955 4.48660 4.54912 4.57829 4.60442 4.72458 4.72996 4.81224 4.83930 4.84820 4.94705 5.01210 5.03223 5.07519 5.09534 5.11436 5.15807 5.17503 5.22400 5.37223 5.45634 5.47665 5.50161 5.54464 6.04342 6.28805 6.66120 7.02003 7.35418 8.12387 8.35793 9.29167 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.002354 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.777322 B =11890.828706 C =13299.610647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.014 4.014 4 H 0.089 0.911 5 C -0.145 4.145 6 C 0.025 3.975 7 C -0.139 4.139 8 C -0.094 4.094 9 C 0.605 3.395 10 O -0.543 6.543 11 N -0.591 5.591 12 C 0.104 3.896 13 C -0.117 4.117 14 C -0.085 4.085 15 C 0.156 3.844 16 N -0.743 5.743 17 C -0.244 4.244 18 H 0.073 0.927 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.272 1.272 25 C -0.116 4.116 26 C 0.114 3.886 27 O 0.107 5.893 28 N -0.370 5.370 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.200 0.800 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.013 0.987 44 H 0.023 0.977 45 H 0.376 0.624 46 H 0.251 0.749 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.876 8.145 -17.868 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.033 4.033 4 H 0.107 0.893 5 C -0.202 4.202 6 C -0.134 4.134 7 C -0.161 4.161 8 C -0.160 4.160 9 C 0.391 3.609 10 O -0.422 6.422 11 N -0.322 5.322 12 C -0.018 4.018 13 C -0.155 4.155 14 C -0.104 4.104 15 C 0.030 3.970 16 N -0.386 5.386 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.267 4.267 20 N -0.618 5.618 21 Si 0.800 3.200 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.197 1.197 25 C -0.155 4.155 26 C -0.007 4.007 27 O 0.039 5.961 28 N -0.074 5.074 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.218 0.782 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.031 0.969 44 H 0.040 0.960 45 H 0.209 0.791 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.001 8.135 -17.227 27.622 hybrid contribution 0.681 -0.702 0.581 1.138 sum -19.320 7.432 -16.646 26.563 Atomic orbital electron populations 1.21803 0.93533 1.02512 1.02820 1.21555 0.97566 0.94038 1.02166 1.19785 0.83395 0.98632 1.01468 0.89256 1.21908 1.03289 1.00210 0.94805 1.24098 1.00120 1.01519 0.87617 1.23085 0.88750 1.01390 1.02899 1.24206 0.97317 1.09803 0.84645 1.16716 0.81511 0.77043 0.85620 1.90821 1.85493 1.52650 1.13226 1.48145 1.06221 1.69645 1.08233 1.22276 1.01997 0.99389 0.78146 1.21868 0.95079 0.97408 1.01159 1.21224 0.94721 0.98484 0.95948 1.20828 0.96600 0.95940 0.83626 1.42572 1.62461 1.31551 1.02020 1.19616 1.23683 1.04268 0.90072 0.90947 1.25525 1.02854 1.01114 0.97238 1.69798 1.50066 1.36057 1.05916 0.85178 0.78049 0.79131 0.77641 1.21375 1.22210 1.19654 1.21840 1.01499 0.98233 0.93908 1.21857 0.79931 0.99262 0.99610 1.85117 1.19130 1.67118 1.24720 1.73732 0.90020 1.18137 1.25491 0.92508 0.90793 0.92109 0.90996 0.93355 0.89388 0.92450 0.91260 0.78245 0.89046 0.88485 0.92481 0.91574 0.90690 0.96895 0.95953 0.79146 0.94015 0.91889 0.88571 0.88419 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 71.98 0.70 -0.66 16 2 C -0.11 -1.47 5.38 30.59 0.16 -1.30 16 3 C -0.01 -0.19 2.85 -11.54 -0.03 -0.22 16 4 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 5 C -0.14 -1.33 8.56 71.98 0.62 -0.71 16 6 C 0.02 0.49 6.20 43.56 0.27 0.76 16 7 C -0.14 -2.74 10.13 22.68 0.23 -2.51 16 8 C -0.09 -2.23 6.90 24.39 0.17 -2.06 16 9 C 0.61 15.41 7.68 86.69 0.67 16.08 16 10 O -0.54 -15.85 16.35 -3.94 -0.06 -15.91 16 11 N -0.59 -13.94 2.97 -821.86 -2.44 -16.38 16 12 C 0.10 2.52 6.18 86.51 0.53 3.05 16 13 C -0.12 -3.44 5.26 30.82 0.16 -3.28 16 14 C -0.08 -2.49 2.19 -10.77 -0.02 -2.51 16 15 C 0.16 6.05 5.65 86.38 0.49 6.54 16 16 N -0.74 -37.11 5.32 -343.45 -1.83 -38.93 16 17 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 18 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 19 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 21 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 C -0.12 -2.65 5.36 30.67 0.16 -2.48 16 26 C 0.11 2.37 6.44 86.36 0.56 2.93 16 27 O 0.11 2.69 7.93 65.83 0.52 3.21 16 28 N -0.37 -9.24 12.04 -48.88 -0.59 -9.83 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.47 6.56 -2.39 -0.02 0.45 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.09 0.52 6.57 -2.38 -0.02 0.50 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.56 7.48 -2.39 -0.02 0.54 16 37 H 0.20 3.01 7.66 -2.91 -0.02 2.99 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.10 2.38 4.26 -13.08 -0.06 2.32 16 40 H 0.06 1.74 8.14 -2.38 -0.02 1.73 16 41 H 0.07 2.31 7.15 -2.39 -0.02 2.29 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.38 19.72 6.84 -92.70 -0.63 19.09 16 46 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 47 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 48 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.10 2.02 7.00 -2.39 -0.02 2.00 16 50 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -68.28 396.13 4.14 -64.13 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.26 Total: 27.10 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 5.97 Total: -3.04 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -4.57 Total: -123.75 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.46 Total: -12.70 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -68.28 4.14 -64.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206528462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.525 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds