Wall clock time and date at job start Tue Mar 31 2020 18:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47356 * 2 1 4 4 H 1.09003 * 109.47120 * 305.57532 * 3 2 1 5 5 C 1.50698 * 109.47136 * 185.57570 * 3 2 1 6 6 H 1.08002 * 120.00223 * 239.99543 * 5 3 2 7 7 C 1.37879 * 120.00198 * 59.99699 * 5 3 2 8 8 N 1.31516 * 119.99874 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00059 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47052 * 90.00002 * 9 7 5 11 11 H 1.48495 * 109.47133 * 210.00276 * 9 7 5 12 12 H 1.48503 * 109.47110 * 330.00102 * 9 7 5 13 13 N 1.46903 * 109.47474 * 65.57167 * 3 2 1 14 14 C 1.46934 * 110.99905 * 189.44468 * 13 3 2 15 15 C 1.53578 * 109.88116 * 164.60882 * 14 13 3 16 16 C 1.50657 * 107.77899 * 49.28448 * 15 14 13 17 17 O 1.32905 * 130.51335 * 163.93086 * 16 15 14 18 18 N 1.21524 * 111.52581 * 180.17721 * 17 16 15 19 19 C 1.31566 * 111.54450 * 359.91858 * 18 17 16 20 20 C 1.48328 * 127.15189 * 180.02562 * 19 18 17 21 21 O 1.21497 * 119.99661 * 184.79804 * 20 19 18 22 22 N 1.34776 * 120.00088 * 4.80248 * 20 19 18 23 23 C 1.46495 * 120.00009 * 4.31432 * 22 20 19 24 24 C 1.46500 * 119.99873 * 184.31371 * 22 20 19 25 25 C 1.53001 * 109.47018 * 119.99698 * 24 22 20 26 26 C 1.52998 * 109.47575 * 239.99965 * 24 22 20 27 27 C 1.35673 * 122.80087 * 344.00729 * 16 15 14 28 28 C 1.47482 * 110.99557 * 64.86445 * 13 3 2 29 29 H 1.09006 * 109.46896 * 304.98723 * 1 2 3 30 30 H 1.09004 * 109.47533 * 64.98248 * 1 2 3 31 31 H 1.09000 * 109.47568 * 184.98713 * 1 2 3 32 32 H 1.09000 * 109.46702 * 239.99857 * 2 1 3 33 33 H 1.09000 * 109.46705 * 120.00389 * 2 1 3 34 34 H 0.97003 * 119.99878 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.40403 * 284.73253 * 14 13 3 36 36 H 1.08994 * 109.40330 * 44.57040 * 14 13 3 37 37 H 1.09010 * 109.79949 * 168.84949 * 15 14 13 38 38 H 1.08997 * 109.80238 * 289.70710 * 15 14 13 39 39 H 1.09002 * 109.47127 * 84.28544 * 23 22 20 40 40 H 1.09002 * 109.47185 * 204.28004 * 23 22 20 41 41 H 1.08997 * 109.47389 * 324.28384 * 23 22 20 42 42 H 1.09001 * 109.46955 * 0.02562 * 24 22 20 43 43 H 1.09005 * 109.47044 * 59.99928 * 25 24 22 44 44 H 1.09000 * 109.47039 * 180.02562 * 25 24 22 45 45 H 1.09004 * 109.47124 * 300.00177 * 25 24 22 46 46 H 1.09004 * 109.46604 * 59.99932 * 26 24 22 47 47 H 1.08993 * 109.47254 * 180.02562 * 26 24 22 48 48 H 1.08999 * 109.46595 * 300.00601 * 26 24 22 49 49 H 1.09008 * 109.72728 * 294.56311 * 28 13 3 50 50 H 1.08995 * 109.73067 * 55.20033 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 3.5407 1.4446 -0.1380 6 1 4.1534 1.8866 0.6338 7 6 4.1316 0.8823 -1.2497 8 7 3.3855 0.3445 -2.1898 9 14 5.9918 0.8844 -1.4204 10 1 6.5464 -0.3496 -0.8084 11 1 6.3567 0.9306 -2.8591 12 1 6.5510 2.0740 -0.7295 13 7 1.6633 2.0951 1.2610 14 6 1.9362 3.5379 1.2091 15 6 1.1990 4.2504 2.3526 16 6 1.4951 3.5033 3.6269 17 8 1.3378 3.8647 4.8961 18 7 1.6949 2.9872 5.6572 19 6 2.1328 1.9313 5.0058 20 6 2.6486 0.6690 5.5894 21 8 3.1028 -0.1941 4.8649 22 7 2.6133 0.4794 6.9233 23 6 1.9804 1.4778 7.7886 24 6 3.2080 -0.7251 7.5079 25 6 4.3171 -0.3246 8.4829 26 6 2.1315 -1.5138 8.2562 27 6 2.0101 2.2481 3.6403 28 6 2.3380 1.4585 2.4076 29 1 -0.3633 0.5893 0.8420 30 1 -0.3634 0.4346 -0.9313 31 1 -0.3634 -1.0237 0.0893 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8013 -0.0514 -2.9717 35 1 3.0083 3.7074 1.3085 36 1 1.5934 3.9372 0.2547 37 1 1.5528 5.2780 2.4364 38 1 0.1259 4.2432 2.1612 39 1 0.9064 1.2957 7.8283 40 1 2.3984 1.4058 8.7927 41 1 2.1652 2.4748 7.3886 42 1 3.6277 -1.3444 6.7153 43 1 3.8977 0.2951 9.2756 44 1 4.7598 -1.2208 8.9175 45 1 5.0841 0.2373 7.9498 46 1 1.3414 -1.7991 7.5615 47 1 2.5741 -2.4097 8.6915 48 1 1.7121 -0.8941 9.0488 49 1 1.9827 0.4343 2.5213 50 1 3.4159 1.4583 2.2465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:43 Heat of formation + Delta-G solvation = 43.080616 kcal Electronic energy + Delta-G solvation = -30776.624429 eV Core-core repulsion = 26807.871905 eV Total energy + Delta-G solvation = -3968.752524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.84779 -39.95794 -38.17667 -36.55756 -34.51654 -33.97508 -32.17068 -31.88891 -30.70072 -29.77304 -27.46100 -27.15170 -26.84518 -25.21883 -24.38714 -23.29731 -22.25628 -21.20093 -20.14474 -19.28578 -18.78969 -17.65064 -17.14798 -16.93647 -16.32834 -15.96982 -15.42017 -15.01563 -14.55526 -14.34880 -14.03608 -13.97840 -13.86685 -13.33400 -13.21383 -13.14183 -12.99614 -12.71124 -12.43336 -12.38689 -12.28663 -12.25684 -11.87291 -11.58843 -11.53054 -11.27574 -11.09891 -10.94195 -10.88187 -10.85562 -10.73836 -10.57795 -10.22664 -10.07843 -9.93985 -9.65971 -9.47383 -9.12578 -8.84281 -8.68904 -8.36931 -7.23790 -6.00997 -4.14208 1.21146 1.96971 2.69635 3.11021 3.24804 3.28036 3.35073 3.37857 3.98267 4.39473 4.55580 4.70622 4.78018 4.83890 4.97533 5.04403 5.13434 5.25231 5.26341 5.31202 5.35904 5.39511 5.44334 5.54428 5.66149 5.71483 5.77194 5.90112 5.92507 5.96027 5.99408 6.08036 6.21357 6.39267 6.44089 6.46067 6.49970 6.62340 6.68885 6.76777 7.11368 7.16768 7.17736 7.31319 7.58763 7.74926 7.86849 7.97830 8.10217 8.21013 8.23794 8.41432 8.93769 9.53759 10.98621 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003816 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.531354 B = 7335.027380 C = 8261.647091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.218 3.782 4 H 0.044 0.956 5 C -0.547 4.547 6 H 0.057 0.943 7 C 0.072 3.928 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.536 5.536 14 C 0.062 3.938 15 C -0.030 4.030 16 C -0.027 4.027 17 O 0.113 5.887 18 N -0.350 5.350 19 C -0.013 4.013 20 C 0.599 3.401 21 O -0.508 6.508 22 N -0.603 5.603 23 C 0.066 3.934 24 C 0.130 3.870 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.144 4.144 28 C 0.133 3.867 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.025 0.975 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.093 0.907 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 3.735 17.900 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C 0.112 3.888 4 H 0.061 0.939 5 C -0.586 4.586 6 H 0.075 0.925 7 C -0.131 4.131 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.260 5.260 14 C -0.067 4.067 15 C -0.068 4.068 16 C -0.092 4.092 17 O 0.045 5.955 18 N -0.058 5.058 19 C -0.170 4.170 20 C 0.385 3.615 21 O -0.381 6.381 22 N -0.338 5.338 23 C -0.077 4.077 24 C 0.027 3.973 25 C -0.219 4.219 26 C -0.217 4.217 27 C -0.149 4.149 28 C 0.005 3.995 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.111 0.889 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.503 3.340 18.678 19.501 hybrid contribution 2.015 -0.259 -0.680 2.143 sum -2.488 3.081 17.998 18.428 Atomic orbital electron populations 1.21723 0.98853 0.98634 1.00454 1.21614 0.92291 0.99025 1.02222 1.19295 0.93335 0.91414 0.84729 0.93866 1.21703 0.92731 1.38798 1.05361 0.92539 1.24866 0.97764 0.94823 0.95636 1.69868 1.34760 1.38176 1.09319 0.86693 0.86221 0.78529 0.77182 1.20595 1.21177 1.20069 1.62596 1.57093 1.01288 1.05068 1.21959 0.98038 0.90286 0.96410 1.20546 1.02816 0.97730 0.85721 1.24285 1.02202 0.96137 0.86544 1.84552 1.60711 1.35943 1.14284 1.74530 1.15993 0.98663 1.16582 1.22699 1.05872 0.95803 0.92594 1.17013 0.78367 0.84346 0.81791 1.90835 1.45080 1.42736 1.59456 1.47742 1.57933 1.22390 1.05694 1.22173 0.97341 0.93461 0.94759 1.21131 0.93485 0.85933 0.96737 1.22159 0.98352 1.02183 0.99226 1.22128 0.99079 1.00073 1.00469 1.21078 1.03275 0.95711 0.94861 1.20371 0.98713 0.96589 0.83822 0.93289 0.94238 0.95575 0.88798 0.94729 0.92829 0.93966 0.89556 0.89413 0.88558 0.92792 0.91087 0.88265 0.87776 0.92255 0.91171 0.92142 0.92087 0.91269 0.92362 0.88945 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.86 37.16 0.37 -2.46 16 2 C -0.11 -2.67 5.15 -26.74 -0.14 -2.80 16 3 C 0.22 5.15 1.70 -68.87 -0.12 5.03 16 4 H 0.04 1.11 7.88 -51.93 -0.41 0.70 16 5 C -0.55 -14.22 7.22 -34.44 -0.25 -14.47 16 6 H 0.06 1.49 5.93 -52.49 -0.31 1.18 16 7 C 0.07 1.92 5.29 -17.82 -0.09 1.83 16 8 N -0.88 -24.29 11.29 55.43 0.63 -23.67 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.54 -10.84 3.98 -228.99 -0.91 -11.75 16 14 C 0.06 1.07 5.07 -3.51 -0.02 1.05 16 15 C -0.03 -0.40 6.52 -27.60 -0.18 -0.58 16 16 C -0.03 -0.42 7.47 -35.25 -0.26 -0.68 16 17 O 0.11 1.67 11.17 19.84 0.22 1.89 16 18 N -0.35 -5.33 8.68 33.26 0.29 -5.04 16 19 C -0.01 -0.22 6.88 -82.89 -0.57 -0.79 16 20 C 0.60 10.23 7.70 -12.11 -0.09 10.14 16 21 O -0.51 -10.24 15.61 5.37 0.08 -10.16 16 22 N -0.60 -7.97 2.76 -174.87 -0.48 -8.45 16 23 C 0.07 0.70 8.89 59.84 0.53 1.23 16 24 C 0.13 1.44 3.24 -67.93 -0.22 1.22 16 25 C -0.16 -1.42 9.18 37.16 0.34 -1.07 16 26 C -0.16 -1.42 9.19 37.16 0.34 -1.08 16 27 C -0.14 -2.61 6.13 -104.94 -0.64 -3.26 16 28 C 0.13 2.75 4.53 -4.99 -0.02 2.73 16 29 H 0.05 0.96 7.64 -51.93 -0.40 0.57 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 2.47 5.94 -51.93 -0.31 2.16 16 33 H 0.03 0.83 6.39 -51.93 -0.33 0.50 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.04 0.79 7.50 -51.93 -0.39 0.40 16 36 H 0.09 1.44 7.82 -51.93 -0.41 1.03 16 37 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 41 H 0.10 1.19 5.04 -51.93 -0.26 0.92 16 42 H 0.10 1.37 6.91 -51.93 -0.36 1.01 16 43 H 0.06 0.45 6.67 -51.93 -0.35 0.10 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.45 7.67 -51.93 -0.40 0.06 16 49 H 0.09 2.07 6.47 -51.92 -0.34 1.73 16 50 H 0.07 1.63 6.06 -51.93 -0.31 1.31 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -28.99 384.33 -8.27 -37.26 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.84 Total: 2.05 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.03 Total: -3.96 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.48 Total: -48.91 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.31 Total: -8.26 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.99 -8.27 -37.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.344 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds