Wall clock time and date at job start Tue Mar 31 2020 18:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47356 * 2 1 4 4 H 1.09003 * 109.47120 * 305.57532 * 3 2 1 5 5 C 1.50698 * 109.47136 * 185.57570 * 3 2 1 6 6 H 1.08002 * 120.00223 * 239.99543 * 5 3 2 7 7 C 1.37879 * 120.00198 * 59.99699 * 5 3 2 8 8 N 1.31516 * 119.99874 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00059 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47052 * 90.00002 * 9 7 5 11 11 H 1.48495 * 109.47133 * 210.00276 * 9 7 5 12 12 H 1.48503 * 109.47110 * 330.00102 * 9 7 5 13 13 N 1.46903 * 109.47474 * 65.57167 * 3 2 1 14 14 C 1.46934 * 110.99905 * 189.44468 * 13 3 2 15 15 C 1.53578 * 109.88116 * 164.60882 * 14 13 3 16 16 C 1.50657 * 107.77899 * 49.28448 * 15 14 13 17 17 O 1.32905 * 130.51335 * 163.93086 * 16 15 14 18 18 N 1.21524 * 111.52581 * 180.17721 * 17 16 15 19 19 C 1.31566 * 111.54450 * 359.91858 * 18 17 16 20 20 C 1.48328 * 127.15189 * 180.02562 * 19 18 17 21 21 O 1.21497 * 119.99661 * 184.79804 * 20 19 18 22 22 N 1.34776 * 120.00088 * 4.80248 * 20 19 18 23 23 C 1.46495 * 120.00009 * 4.31432 * 22 20 19 24 24 C 1.46500 * 119.99873 * 184.31371 * 22 20 19 25 25 C 1.53001 * 109.47018 * 119.99698 * 24 22 20 26 26 C 1.52998 * 109.47575 * 239.99965 * 24 22 20 27 27 C 1.35673 * 122.80087 * 344.00729 * 16 15 14 28 28 C 1.47482 * 110.99557 * 64.86445 * 13 3 2 29 29 H 1.09006 * 109.46896 * 304.98723 * 1 2 3 30 30 H 1.09004 * 109.47533 * 64.98248 * 1 2 3 31 31 H 1.09000 * 109.47568 * 184.98713 * 1 2 3 32 32 H 1.09000 * 109.46702 * 239.99857 * 2 1 3 33 33 H 1.09000 * 109.46705 * 120.00389 * 2 1 3 34 34 H 0.97003 * 119.99878 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.40403 * 284.73253 * 14 13 3 36 36 H 1.08994 * 109.40330 * 44.57040 * 14 13 3 37 37 H 1.09010 * 109.79949 * 168.84949 * 15 14 13 38 38 H 1.08997 * 109.80238 * 289.70710 * 15 14 13 39 39 H 1.09002 * 109.47127 * 84.28544 * 23 22 20 40 40 H 1.09002 * 109.47185 * 204.28004 * 23 22 20 41 41 H 1.08997 * 109.47389 * 324.28384 * 23 22 20 42 42 H 1.09001 * 109.46955 * 0.02562 * 24 22 20 43 43 H 1.09005 * 109.47044 * 59.99928 * 25 24 22 44 44 H 1.09000 * 109.47039 * 180.02562 * 25 24 22 45 45 H 1.09004 * 109.47124 * 300.00177 * 25 24 22 46 46 H 1.09004 * 109.46604 * 59.99932 * 26 24 22 47 47 H 1.08993 * 109.47254 * 180.02562 * 26 24 22 48 48 H 1.08999 * 109.46595 * 300.00601 * 26 24 22 49 49 H 1.09008 * 109.72728 * 294.56311 * 28 13 3 50 50 H 1.08995 * 109.73067 * 55.20033 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 3.5407 1.4446 -0.1380 6 1 4.1534 1.8866 0.6338 7 6 4.1316 0.8823 -1.2497 8 7 3.3855 0.3445 -2.1898 9 14 5.9918 0.8844 -1.4204 10 1 6.5464 -0.3496 -0.8084 11 1 6.3567 0.9306 -2.8591 12 1 6.5510 2.0740 -0.7295 13 7 1.6633 2.0951 1.2610 14 6 1.9362 3.5379 1.2091 15 6 1.1990 4.2504 2.3526 16 6 1.4951 3.5033 3.6269 17 8 1.3378 3.8647 4.8961 18 7 1.6949 2.9872 5.6572 19 6 2.1328 1.9313 5.0058 20 6 2.6486 0.6690 5.5894 21 8 3.1028 -0.1941 4.8649 22 7 2.6133 0.4794 6.9233 23 6 1.9804 1.4778 7.7886 24 6 3.2080 -0.7251 7.5079 25 6 4.3171 -0.3246 8.4829 26 6 2.1315 -1.5138 8.2562 27 6 2.0101 2.2481 3.6403 28 6 2.3380 1.4585 2.4076 29 1 -0.3633 0.5893 0.8420 30 1 -0.3634 0.4346 -0.9313 31 1 -0.3634 -1.0237 0.0893 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8013 -0.0514 -2.9717 35 1 3.0083 3.7074 1.3085 36 1 1.5934 3.9372 0.2547 37 1 1.5528 5.2780 2.4364 38 1 0.1259 4.2432 2.1612 39 1 0.9064 1.2957 7.8283 40 1 2.3984 1.4058 8.7927 41 1 2.1652 2.4748 7.3886 42 1 3.6277 -1.3444 6.7153 43 1 3.8977 0.2951 9.2756 44 1 4.7598 -1.2208 8.9175 45 1 5.0841 0.2373 7.9498 46 1 1.3414 -1.7991 7.5615 47 1 2.5741 -2.4097 8.6915 48 1 1.7121 -0.8941 9.0488 49 1 1.9827 0.4343 2.5213 50 1 3.4159 1.4583 2.2465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:42 Heat of formation + Delta-G solvation = 26.378586 kcal Electronic energy + Delta-G solvation = -30777.348683 eV Core-core repulsion = 26807.871905 eV Total energy + Delta-G solvation = -3969.476778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.14700 -41.15478 -39.78104 -37.69415 -36.18811 -35.24348 -33.81806 -33.17778 -32.30821 -31.14868 -28.74726 -28.18221 -28.06377 -26.77997 -25.72614 -24.90458 -23.82430 -22.31830 -21.66226 -20.77706 -20.12727 -18.92925 -18.54040 -18.45891 -17.81076 -17.22032 -16.83070 -16.54451 -16.10977 -15.67691 -15.61061 -15.26041 -15.02749 -14.77326 -14.50186 -14.39969 -14.21926 -13.96588 -13.92929 -13.66649 -13.27604 -13.24606 -13.18829 -13.12213 -12.95527 -12.74414 -12.63340 -12.44778 -12.34868 -12.29480 -12.11586 -11.89265 -11.84069 -11.57341 -11.48693 -11.42564 -11.22181 -11.03181 -10.43560 -10.08801 -9.86531 -9.01830 -8.05218 -6.25629 -0.06566 0.61801 1.34481 1.38128 1.45005 1.58734 1.85226 1.92571 2.39109 2.73334 3.13328 3.16634 3.44494 3.76555 3.87227 3.97130 4.04200 4.09095 4.15451 4.24260 4.37594 4.49166 4.56610 4.57524 4.63195 4.63374 4.68855 4.74152 4.75444 4.80881 4.84105 4.90566 4.91670 4.96436 4.98255 5.04044 5.18208 5.21430 5.26239 5.28144 5.43052 5.46638 5.48615 5.62446 5.78500 5.99034 6.04047 6.13386 6.34952 6.55060 6.74358 6.91773 6.96286 7.44435 8.90708 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003816 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.531354 B = 7335.027380 C = 8261.647091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.226 3.774 4 H 0.026 0.974 5 C -0.553 4.553 6 H 0.045 0.955 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 0.938 3.062 10 H -0.285 1.285 11 H -0.277 1.277 12 H -0.273 1.273 13 N -0.530 5.530 14 C 0.056 3.944 15 C -0.018 4.018 16 C -0.003 4.003 17 O 0.132 5.868 18 N -0.333 5.333 19 C -0.023 4.023 20 C 0.587 3.413 21 O -0.556 6.556 22 N -0.592 5.592 23 C 0.063 3.937 24 C 0.120 3.880 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.183 4.183 28 C 0.153 3.847 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.017 0.983 34 H 0.262 0.738 35 H 0.023 0.977 36 H 0.094 0.906 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 5.603 20.374 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 C 0.119 3.881 4 H 0.044 0.956 5 C -0.592 4.592 6 H 0.063 0.937 7 C -0.172 4.172 8 N -0.544 5.544 9 Si 0.765 3.235 10 H -0.211 1.211 11 H -0.203 1.203 12 H -0.198 1.198 13 N -0.254 5.254 14 C -0.072 4.072 15 C -0.056 4.056 16 C -0.068 4.068 17 O 0.063 5.937 18 N -0.039 5.039 19 C -0.180 4.180 20 C 0.374 3.626 21 O -0.433 6.433 22 N -0.325 5.325 23 C -0.079 4.079 24 C 0.018 3.982 25 C -0.211 4.211 26 C -0.209 4.209 27 C -0.189 4.189 28 C 0.024 3.976 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.113 0.887 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.536 5.230 21.216 22.542 hybrid contribution 2.328 -0.819 -1.357 2.816 sum -3.208 4.412 19.860 20.595 Atomic orbital electron populations 1.21569 0.96034 0.99821 1.00879 1.21468 0.94774 0.98624 0.99898 1.19049 0.91811 0.91468 0.85804 0.95646 1.21930 0.94197 1.38268 1.04841 0.93695 1.25481 1.01190 0.94855 0.95640 1.69968 1.35969 1.38838 1.09655 0.85872 0.82182 0.78126 0.77352 1.21146 1.20267 1.19794 1.62542 1.56464 1.02973 1.03385 1.22107 0.97726 0.88481 0.98908 1.20641 1.03857 0.98701 0.82428 1.24559 0.99860 0.94947 0.87407 1.84572 1.59997 1.35417 1.13764 1.74571 1.15286 0.97965 1.16046 1.22756 1.06411 0.96394 0.92410 1.17243 0.78349 0.84065 0.82992 1.90807 1.47549 1.44146 1.60834 1.47936 1.56652 1.23296 1.04653 1.22340 0.97882 0.92048 0.95630 1.21365 0.95038 0.85190 0.96580 1.22113 0.96982 1.03260 0.98741 1.22079 0.97817 1.00850 1.00186 1.20889 1.06378 0.97152 0.94434 1.19885 0.96250 0.95992 0.85447 0.92554 0.93863 0.94094 0.91643 0.96387 0.92829 0.95879 0.88722 0.85137 0.85929 0.91977 0.87785 0.89300 0.90758 0.90200 0.89165 0.93833 0.93903 0.89251 0.90401 0.91711 0.94945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 9.86 71.98 0.71 -4.42 16 2 C -0.11 -5.36 5.15 30.59 0.16 -5.21 16 3 C 0.23 11.04 1.70 44.17 0.07 11.12 16 4 H 0.03 1.34 7.88 -2.39 -0.02 1.33 16 5 C -0.55 -30.00 7.22 25.60 0.18 -29.81 16 6 H 0.04 2.50 5.93 -2.91 -0.02 2.48 16 7 C 0.03 1.59 5.29 84.65 0.45 2.03 16 8 N -0.91 -51.28 11.29 21.45 0.24 -51.03 16 9 Si 0.94 44.35 29.54 68.60 2.03 46.38 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.53 -21.86 3.98 -878.39 -3.50 -25.36 16 14 C 0.06 1.90 5.07 86.49 0.44 2.34 16 15 C -0.02 -0.43 6.52 30.03 0.20 -0.24 16 16 C 0.00 -0.07 7.47 25.08 0.19 0.11 16 17 O 0.13 3.52 11.17 81.01 0.90 4.43 16 18 N -0.33 -9.57 8.68 -49.00 -0.43 -9.99 16 19 C -0.02 -0.79 6.88 42.48 0.29 -0.50 16 20 C 0.59 20.81 7.70 86.93 0.67 21.48 16 21 O -0.56 -24.16 15.61 -3.71 -0.06 -24.22 16 22 N -0.59 -15.41 2.76 -825.47 -2.28 -17.69 16 23 C 0.06 1.19 8.89 127.77 1.14 2.33 16 24 C 0.12 2.61 3.24 44.99 0.15 2.75 16 25 C -0.15 -2.40 9.18 71.98 0.66 -1.74 16 26 C -0.15 -2.43 9.19 71.98 0.66 -1.77 16 27 C -0.18 -6.72 6.13 -20.07 -0.12 -6.85 16 28 C 0.15 6.68 4.53 85.23 0.39 7.06 16 29 H 0.06 2.20 7.64 -2.38 -0.02 2.18 16 30 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 3.60 5.94 -2.39 -0.01 3.58 16 33 H 0.02 0.90 6.39 -2.39 -0.02 0.89 16 34 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.02 0.86 7.50 -2.39 -0.02 0.85 16 36 H 0.09 3.04 7.82 -2.39 -0.02 3.02 16 37 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.30 6.44 -2.39 -0.02 1.28 16 41 H 0.09 1.93 5.04 -2.39 -0.01 1.91 16 42 H 0.07 2.07 6.91 -2.39 -0.02 2.05 16 43 H 0.08 0.93 6.67 -2.38 -0.02 0.91 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.08 0.95 7.67 -2.39 -0.02 0.93 16 49 H 0.06 3.13 6.47 -2.38 -0.02 3.12 16 50 H 0.03 1.64 6.06 -2.39 -0.01 1.63 16 Total: -1.00 -67.66 384.33 4.09 -63.58 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.95 Total: 15.21 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 6.23 Total: -1.30 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -5.96 Total: -104.08 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.85 Total: -19.79 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -67.66 4.09 -63.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.955 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds