Wall clock time and date at job start Tue Mar 31 2020 18:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 H 1.09004 * 109.46867 * 52.89578 * 3 2 1 5 5 C 1.50703 * 109.47062 * 172.89080 * 3 2 1 6 6 H 1.08000 * 119.99385 * 114.15748 * 5 3 2 7 7 C 1.37876 * 120.00367 * 294.15416 * 5 3 2 8 8 N 1.31514 * 119.99586 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00051 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47231 * 90.00103 * 9 7 5 11 11 H 1.48503 * 109.46983 * 210.00359 * 9 7 5 12 12 H 1.48504 * 109.47209 * 329.99886 * 9 7 5 13 13 N 1.46897 * 109.47148 * 292.89471 * 3 2 1 14 14 C 1.46941 * 111.00088 * 74.45141 * 13 3 2 15 15 C 1.53592 * 109.87373 * 53.17475 * 14 13 3 16 16 C 1.50618 * 107.76379 * 49.24623 * 15 14 13 17 17 O 1.32882 * 130.63231 * 164.02221 * 16 15 14 18 18 N 1.21558 * 111.22836 * 179.97438 * 17 16 15 19 19 C 1.30768 * 111.70297 * 0.38417 * 18 17 16 20 20 C 1.50708 * 127.01424 * 179.79576 * 19 18 17 21 21 N 1.46898 * 109.46833 * 269.68324 * 20 19 18 22 22 C 1.47014 * 110.99933 * 170.00138 * 21 20 19 23 23 C 1.53092 * 109.25861 * 182.39281 * 22 21 20 24 24 O 1.43021 * 109.26041 * 303.15129 * 23 22 21 25 25 C 1.43016 * 113.73639 * 58.66617 * 24 23 22 26 26 C 1.47011 * 111.00030 * 293.63496 * 21 20 19 27 27 C 1.35747 * 122.83700 * 344.09628 * 16 15 14 28 28 C 1.47480 * 110.99988 * 199.05500 * 13 3 2 29 29 H 1.08995 * 109.47341 * 329.45044 * 1 2 3 30 30 H 1.09007 * 109.46861 * 89.44541 * 1 2 3 31 31 H 1.09001 * 109.47724 * 209.44531 * 1 2 3 32 32 H 1.08994 * 109.47699 * 239.99668 * 2 1 3 33 33 H 1.09005 * 109.46836 * 119.99932 * 2 1 3 34 34 H 0.97000 * 119.99497 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.40285 * 173.29767 * 14 13 3 36 36 H 1.08997 * 109.39792 * 293.13620 * 14 13 3 37 37 H 1.08998 * 109.79716 * 168.80972 * 15 14 13 38 38 H 1.08999 * 109.80151 * 289.61911 * 15 14 13 39 39 H 1.08999 * 109.46940 * 149.68332 * 20 19 18 40 40 H 1.08998 * 109.47309 * 29.68073 * 20 19 18 41 41 H 1.08997 * 109.50793 * 62.45323 * 22 21 20 42 42 H 1.09006 * 109.50509 * 302.32776 * 22 21 20 43 43 H 1.08999 * 109.50639 * 183.21509 * 23 22 21 44 44 H 1.09002 * 109.54301 * 63.10939 * 23 22 21 45 45 H 1.09002 * 109.50070 * 61.26962 * 25 24 23 46 46 H 1.09001 * 109.50209 * 181.39914 * 25 24 23 47 47 H 1.09002 * 109.51119 * 297.54149 * 26 21 20 48 48 H 1.08999 * 109.50852 * 57.67417 * 26 21 20 49 49 H 1.09001 * 109.72824 * 166.64478 * 28 13 3 50 50 H 1.09005 * 109.76952 * 45.98878 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5766 1.9916 0.8196 5 6 3.5367 1.4460 0.1758 6 1 4.1734 1.7946 -0.6238 7 6 4.0932 1.0045 1.3575 8 7 3.3177 0.5797 2.3311 9 14 5.9483 1.0096 1.5757 10 1 6.3757 2.3109 2.1495 11 1 6.3418 -0.0894 2.4936 12 1 6.6023 0.8113 0.2572 13 7 1.6952 2.0837 -1.2759 14 6 0.2633 2.4085 -1.3320 15 6 -0.1347 3.2297 -0.0966 16 6 0.8578 4.3534 0.0475 17 8 0.7996 5.4733 0.7604 18 7 1.8070 6.1385 0.6182 19 6 2.6526 5.5667 -0.1992 20 6 4.0012 6.0902 -0.6218 21 7 3.8511 6.9097 -1.8317 22 6 5.0961 7.6286 -2.1389 23 6 4.8778 8.5138 -3.3687 24 8 4.4370 7.7030 -4.4613 25 6 3.2264 6.9890 -4.1967 26 6 3.4280 6.0884 -2.9752 27 6 2.0531 4.3668 -0.5958 28 6 2.5297 3.2769 -1.5101 29 1 -0.3634 0.8850 0.5223 30 1 -0.3633 0.0099 -1.0277 31 1 -0.3634 -0.8949 0.5052 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.7091 0.2694 3.1626 35 1 0.0582 2.9870 -2.2328 36 1 -0.3166 1.4858 -1.3542 37 1 -1.1367 3.6371 -0.2312 38 1 -0.1094 2.5974 0.7909 39 1 4.6669 5.2528 -0.8305 40 1 4.4221 6.6983 0.1789 41 1 5.8900 6.9104 -2.3437 42 1 5.3770 8.2499 -1.2884 43 1 5.8138 9.0050 -3.6344 44 1 4.1219 9.2670 -3.1463 45 1 2.4222 7.6974 -3.9978 46 1 2.9682 6.3774 -5.0612 47 1 4.1953 5.3455 -3.1935 48 1 2.4913 5.5854 -2.7353 49 1 2.4309 3.5972 -2.5473 50 1 3.5728 3.0455 -1.2943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:40 Heat of formation + Delta-G solvation = 52.898137 kcal Electronic energy + Delta-G solvation = -31633.560223 eV Core-core repulsion = 27665.233419 eV Total energy + Delta-G solvation = -3968.326804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.45178 -39.63293 -38.76986 -36.28039 -33.96869 -33.29196 -31.85438 -31.28822 -31.11935 -29.63199 -28.67247 -27.04014 -25.06392 -24.76891 -24.09516 -23.26445 -22.16829 -20.93497 -20.58349 -19.99341 -18.39066 -17.26225 -16.89001 -16.66997 -16.28140 -16.15019 -15.33164 -15.21069 -15.10673 -14.78469 -14.39725 -14.27980 -14.04134 -13.94020 -13.29121 -13.09062 -12.69914 -12.65610 -12.56993 -12.47340 -12.20996 -11.89851 -11.63863 -11.52272 -11.44973 -11.38193 -11.03203 -10.88292 -10.76540 -10.74526 -10.54756 -10.53368 -10.03163 -9.86102 -9.79383 -9.56602 -9.31537 -8.81320 -8.53647 -8.47869 -8.36943 -7.40389 -6.11856 -4.15479 1.95189 2.63182 3.22176 3.30271 3.31677 3.49974 3.68833 3.85970 4.32180 4.43205 4.75311 4.80294 4.88728 5.00014 5.04367 5.06069 5.19455 5.21541 5.35144 5.40305 5.42743 5.43675 5.49565 5.54958 5.61380 5.65740 5.78519 5.80696 5.87588 5.93293 6.03267 6.08734 6.13265 6.23062 6.24981 6.37340 6.44480 6.54256 6.67297 6.80455 6.85194 6.86361 7.00706 7.04028 7.21165 7.43423 7.61724 7.73219 7.98865 8.18611 8.46485 8.72260 8.89793 9.49333 10.96044 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.004590 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.723702 B = 6098.890143 C = 7135.660545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C 0.211 3.789 4 H 0.018 0.982 5 C -0.514 4.514 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.526 5.526 14 C 0.039 3.961 15 C -0.075 4.075 16 C -0.032 4.032 17 O 0.098 5.902 18 N -0.368 5.368 19 C 0.040 3.960 20 C 0.138 3.862 21 N -0.530 5.530 22 C 0.017 3.983 23 C 0.066 3.934 24 O -0.387 6.387 25 C 0.065 3.935 26 C 0.013 3.987 27 C -0.205 4.205 28 C 0.126 3.874 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.099 0.901 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.065 0.935 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 9.431 -9.249 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C 0.105 3.895 4 H 0.036 0.964 5 C -0.552 4.552 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.209 1.209 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.247 5.247 14 C -0.090 4.090 15 C -0.115 4.115 16 C -0.097 4.097 17 O 0.035 5.965 18 N -0.075 5.075 19 C -0.118 4.118 20 C 0.010 3.990 21 N -0.257 5.257 22 C -0.111 4.111 23 C -0.011 4.011 24 O -0.305 6.305 25 C -0.011 4.011 26 C -0.115 4.115 27 C -0.211 4.211 28 C -0.002 4.002 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.083 0.917 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.744 10.462 -8.822 13.957 hybrid contribution 1.481 -0.613 0.887 1.832 sum -1.262 9.849 -7.935 12.711 Atomic orbital electron populations 1.22260 0.99667 1.00105 0.99192 1.21522 0.91457 0.99569 1.01963 1.19421 0.95545 0.90625 0.83909 0.96436 1.21202 0.91112 1.43097 0.99792 0.91809 1.24881 0.97761 0.95169 0.95894 1.69907 1.34587 1.42851 1.05118 0.86665 0.85956 0.77698 0.78182 1.20863 1.21100 1.19755 1.62484 1.01189 1.22857 1.38175 1.22809 0.92157 0.99549 0.94472 1.21100 0.95434 0.91581 1.03340 1.23993 0.99148 0.90597 0.96004 1.84610 1.32826 1.25781 1.53316 1.74198 0.95672 1.18099 1.19558 1.22490 0.98000 0.93664 0.97680 1.20222 0.90211 0.96267 0.92288 1.62154 1.31180 1.28991 1.03349 1.22792 0.91024 0.98019 0.99265 1.22633 1.00204 0.92515 0.85771 1.87971 1.42077 1.62036 1.38458 1.22676 0.86841 0.94505 0.97127 1.22954 1.02313 0.95435 0.90818 1.21592 0.95190 0.98573 1.05718 1.20840 1.00742 0.84596 0.94052 0.93336 0.93591 0.94775 0.93833 0.89746 0.92909 0.92000 0.87667 0.89998 0.88022 0.91787 0.89243 0.93546 0.89542 0.88504 0.92364 0.92483 0.88337 0.93254 0.88957 0.91672 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.31 37.16 0.31 -2.41 16 2 C -0.11 -2.32 5.49 -26.73 -0.15 -2.46 16 3 C 0.21 4.75 1.17 -68.87 -0.08 4.67 16 4 H 0.02 0.45 5.21 -51.93 -0.27 0.18 16 5 C -0.51 -12.98 7.62 -34.44 -0.26 -13.24 16 6 H 0.06 1.60 5.66 -52.49 -0.30 1.30 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.25 11.75 55.43 0.65 -23.59 16 9 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.53 -10.03 4.80 -228.96 -1.10 -11.13 16 14 C 0.04 0.62 5.25 -3.49 -0.02 0.60 16 15 C -0.07 -1.19 5.32 -27.62 -0.15 -1.34 16 16 C -0.03 -0.60 6.92 -35.24 -0.24 -0.84 16 17 O 0.10 1.89 11.19 19.89 0.22 2.11 16 18 N -0.37 -7.22 12.11 33.45 0.41 -6.81 16 19 C 0.04 0.73 6.16 -82.43 -0.51 0.23 16 20 C 0.14 2.14 5.55 -4.97 -0.03 2.11 16 21 N -0.53 -7.23 4.72 -235.75 -1.11 -8.34 16 22 C 0.02 0.19 5.64 -3.71 -0.02 0.17 16 23 C 0.07 0.67 7.01 37.20 0.26 0.94 16 24 O -0.39 -4.76 10.83 -35.23 -0.38 -5.14 16 25 C 0.07 0.75 7.01 37.21 0.26 1.01 16 26 C 0.01 0.17 4.96 -3.71 -0.02 0.15 16 27 C -0.20 -3.80 4.75 -105.22 -0.50 -4.30 16 28 C 0.13 2.30 5.38 -4.98 -0.03 2.27 16 29 H 0.05 0.83 4.82 -51.93 -0.25 0.58 16 30 H 0.05 0.71 6.27 -51.92 -0.33 0.38 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 2.10 6.42 -51.93 -0.33 1.76 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.06 0.87 8.08 -51.93 -0.42 0.46 16 36 H 0.11 1.55 4.11 -51.93 -0.21 1.34 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.79 4.93 -51.93 -0.26 1.53 16 39 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 40 H 0.09 1.33 8.04 -51.93 -0.42 0.91 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 1.29 5.03 -51.93 -0.26 1.03 16 49 H 0.07 1.04 6.78 -51.93 -0.35 0.69 16 50 H 0.11 2.24 5.10 -51.93 -0.26 1.97 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -28.78 366.31 -9.52 -38.30 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.44 Total: 4.35 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.26 Total: -10.84 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -1.15 Total: -49.88 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: -0.16 Total: -3.03 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.78 -9.52 -38.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.195 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds