Wall clock time and date at job start Tue Mar 31 2020 18:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47250 * 2 1 4 4 H 1.09004 * 109.46867 * 52.89578 * 3 2 1 5 5 C 1.50703 * 109.47062 * 172.89080 * 3 2 1 6 6 H 1.08000 * 119.99385 * 114.15748 * 5 3 2 7 7 C 1.37876 * 120.00367 * 294.15416 * 5 3 2 8 8 N 1.31514 * 119.99586 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00051 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47231 * 90.00103 * 9 7 5 11 11 H 1.48503 * 109.46983 * 210.00359 * 9 7 5 12 12 H 1.48504 * 109.47209 * 329.99886 * 9 7 5 13 13 N 1.46897 * 109.47148 * 292.89471 * 3 2 1 14 14 C 1.46941 * 111.00088 * 74.45141 * 13 3 2 15 15 C 1.53592 * 109.87373 * 53.17475 * 14 13 3 16 16 C 1.50618 * 107.76379 * 49.24623 * 15 14 13 17 17 O 1.32882 * 130.63231 * 164.02221 * 16 15 14 18 18 N 1.21558 * 111.22836 * 179.97438 * 17 16 15 19 19 C 1.30768 * 111.70297 * 0.38417 * 18 17 16 20 20 C 1.50708 * 127.01424 * 179.79576 * 19 18 17 21 21 N 1.46898 * 109.46833 * 269.68324 * 20 19 18 22 22 C 1.47014 * 110.99933 * 170.00138 * 21 20 19 23 23 C 1.53092 * 109.25861 * 182.39281 * 22 21 20 24 24 O 1.43021 * 109.26041 * 303.15129 * 23 22 21 25 25 C 1.43016 * 113.73639 * 58.66617 * 24 23 22 26 26 C 1.47011 * 111.00030 * 293.63496 * 21 20 19 27 27 C 1.35747 * 122.83700 * 344.09628 * 16 15 14 28 28 C 1.47480 * 110.99988 * 199.05500 * 13 3 2 29 29 H 1.08995 * 109.47341 * 329.45044 * 1 2 3 30 30 H 1.09007 * 109.46861 * 89.44541 * 1 2 3 31 31 H 1.09001 * 109.47724 * 209.44531 * 1 2 3 32 32 H 1.08994 * 109.47699 * 239.99668 * 2 1 3 33 33 H 1.09005 * 109.46836 * 119.99932 * 2 1 3 34 34 H 0.97000 * 119.99497 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.40285 * 173.29767 * 14 13 3 36 36 H 1.08997 * 109.39792 * 293.13620 * 14 13 3 37 37 H 1.08998 * 109.79716 * 168.80972 * 15 14 13 38 38 H 1.08999 * 109.80151 * 289.61911 * 15 14 13 39 39 H 1.08999 * 109.46940 * 149.68332 * 20 19 18 40 40 H 1.08998 * 109.47309 * 29.68073 * 20 19 18 41 41 H 1.08997 * 109.50793 * 62.45323 * 22 21 20 42 42 H 1.09006 * 109.50509 * 302.32776 * 22 21 20 43 43 H 1.08999 * 109.50639 * 183.21509 * 23 22 21 44 44 H 1.09002 * 109.54301 * 63.10939 * 23 22 21 45 45 H 1.09002 * 109.50070 * 61.26962 * 25 24 23 46 46 H 1.09001 * 109.50209 * 181.39914 * 25 24 23 47 47 H 1.09002 * 109.51119 * 297.54149 * 26 21 20 48 48 H 1.08999 * 109.50852 * 57.67417 * 26 21 20 49 49 H 1.09001 * 109.72824 * 166.64478 * 28 13 3 50 50 H 1.09005 * 109.76952 * 45.98878 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5766 1.9916 0.8196 5 6 3.5367 1.4460 0.1758 6 1 4.1734 1.7946 -0.6238 7 6 4.0932 1.0045 1.3575 8 7 3.3177 0.5797 2.3311 9 14 5.9483 1.0096 1.5757 10 1 6.3757 2.3109 2.1495 11 1 6.3418 -0.0894 2.4936 12 1 6.6023 0.8113 0.2572 13 7 1.6952 2.0837 -1.2759 14 6 0.2633 2.4085 -1.3320 15 6 -0.1347 3.2297 -0.0966 16 6 0.8578 4.3534 0.0475 17 8 0.7996 5.4733 0.7604 18 7 1.8070 6.1385 0.6182 19 6 2.6526 5.5667 -0.1992 20 6 4.0012 6.0902 -0.6218 21 7 3.8511 6.9097 -1.8317 22 6 5.0961 7.6286 -2.1389 23 6 4.8778 8.5138 -3.3687 24 8 4.4370 7.7030 -4.4613 25 6 3.2264 6.9890 -4.1967 26 6 3.4280 6.0884 -2.9752 27 6 2.0531 4.3668 -0.5958 28 6 2.5297 3.2769 -1.5101 29 1 -0.3634 0.8850 0.5223 30 1 -0.3633 0.0099 -1.0277 31 1 -0.3634 -0.8949 0.5052 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.7091 0.2694 3.1626 35 1 0.0582 2.9870 -2.2328 36 1 -0.3166 1.4858 -1.3542 37 1 -1.1367 3.6371 -0.2312 38 1 -0.1094 2.5974 0.7909 39 1 4.6669 5.2528 -0.8305 40 1 4.4221 6.6983 0.1789 41 1 5.8900 6.9104 -2.3437 42 1 5.3770 8.2499 -1.2884 43 1 5.8138 9.0050 -3.6344 44 1 4.1219 9.2670 -3.1463 45 1 2.4222 7.6974 -3.9978 46 1 2.9682 6.3774 -5.0612 47 1 4.1953 5.3455 -3.1935 48 1 2.4913 5.5854 -2.7353 49 1 2.4309 3.5972 -2.5473 50 1 3.5728 3.0455 -1.2943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:39 Heat of formation + Delta-G solvation = 33.072547 kcal Electronic energy + Delta-G solvation = -31634.419925 eV Core-core repulsion = 27665.233419 eV Total energy + Delta-G solvation = -3969.186506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.89982 -40.62235 -40.23860 -37.37758 -35.60179 -34.72076 -33.57303 -32.59548 -32.18666 -31.09462 -29.81596 -28.73547 -26.54382 -25.97578 -25.03611 -24.84651 -23.62705 -22.33868 -21.88047 -21.23467 -19.92746 -18.68010 -18.54204 -18.06891 -17.43478 -17.14330 -17.00230 -16.23360 -16.08564 -16.03706 -15.98067 -15.76678 -15.39288 -15.06899 -14.69030 -14.45197 -14.31992 -14.06752 -13.81576 -13.64916 -13.60020 -13.25986 -13.18588 -12.95099 -12.78699 -12.56761 -12.50478 -12.41459 -12.32522 -12.02113 -11.98665 -11.82997 -11.62977 -11.44934 -11.09704 -10.91374 -10.69788 -10.56925 -10.44223 -9.85048 -9.53907 -8.97571 -8.12337 -6.19168 0.51184 1.23352 1.34504 1.38062 1.45254 2.11028 2.39368 2.69312 2.93315 3.11411 3.19699 3.36385 3.66251 3.88322 3.92493 3.95999 4.06286 4.10905 4.12718 4.17308 4.29178 4.29919 4.39722 4.51791 4.53070 4.55797 4.62183 4.67328 4.70179 4.76178 4.78887 4.83010 4.84248 4.87484 4.96926 4.99026 5.02615 5.12476 5.17704 5.33075 5.44512 5.57263 5.70395 5.71370 5.74921 5.85713 5.92489 6.13722 6.29937 6.35497 6.77325 6.97610 7.27682 7.48488 8.94543 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.004590 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.723702 B = 6098.890143 C = 7135.660545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C 0.221 3.779 4 H -0.010 1.010 5 C -0.518 4.518 6 H 0.062 0.938 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.937 3.063 10 H -0.285 1.285 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.530 5.530 14 C 0.039 3.961 15 C -0.071 4.071 16 C -0.038 4.038 17 O 0.087 5.913 18 N -0.390 5.390 19 C 0.039 3.961 20 C 0.141 3.859 21 N -0.536 5.536 22 C 0.016 3.984 23 C 0.066 3.934 24 O -0.400 6.400 25 C 0.069 3.931 26 C 0.015 3.985 27 C -0.218 4.218 28 C 0.134 3.866 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.257 0.743 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.117 0.883 47 H 0.043 0.957 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 10.200 -11.132 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.007 0.993 5 C -0.557 4.557 6 H 0.080 0.920 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.764 3.236 10 H -0.212 1.212 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.251 5.251 14 C -0.089 4.089 15 C -0.111 4.111 16 C -0.103 4.103 17 O 0.026 5.974 18 N -0.099 5.099 19 C -0.119 4.119 20 C 0.013 3.987 21 N -0.262 5.262 22 C -0.112 4.112 23 C -0.011 4.011 24 O -0.319 6.319 25 C -0.008 4.008 26 C -0.113 4.113 27 C -0.224 4.224 28 C 0.006 3.994 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.117 0.883 43 H 0.140 0.860 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.135 0.865 47 H 0.062 0.938 48 H 0.099 0.901 49 H 0.108 0.892 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.297 11.234 -10.725 15.878 hybrid contribution 1.658 -0.812 1.439 2.341 sum -1.640 10.422 -9.286 14.055 Atomic orbital electron populations 1.22148 0.96195 1.00747 1.01192 1.21358 0.94629 0.98395 0.99808 1.19129 0.93711 0.91077 0.84661 0.99260 1.21605 0.93019 1.41634 0.99406 0.92025 1.25514 1.00984 0.95495 0.96063 1.70028 1.35756 1.44262 1.05387 0.85876 0.82297 0.77243 0.78220 1.21160 1.21208 1.18907 1.62410 1.03445 1.23440 1.35835 1.22949 0.89930 1.00642 0.95379 1.21185 0.96815 0.90502 1.02549 1.24519 0.99826 0.90688 0.95290 1.84578 1.32936 1.26178 1.53688 1.74174 0.96231 1.18947 1.20565 1.22927 0.98633 0.93533 0.96829 1.20212 0.88670 0.96389 0.93472 1.62172 1.32578 1.28583 1.02879 1.22913 0.89850 0.98042 1.00401 1.22788 1.01465 0.92035 0.84788 1.87957 1.42333 1.62296 1.39314 1.22715 0.86666 0.94406 0.96970 1.22932 1.01448 0.95662 0.91240 1.21714 0.95504 0.98834 1.06367 1.20734 0.99132 0.84235 0.95317 0.92954 0.90790 0.93995 0.94411 0.93401 0.93361 0.89511 0.86204 0.86289 0.89767 0.92413 0.88911 0.93735 0.88270 0.86035 0.92138 0.92435 0.86546 0.93841 0.90091 0.89156 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 8.31 71.98 0.60 -4.25 16 2 C -0.10 -4.48 5.49 30.59 0.17 -4.31 16 3 C 0.22 9.98 1.17 44.17 0.05 10.04 16 4 H -0.01 -0.51 5.21 -2.39 -0.01 -0.53 16 5 C -0.52 -26.57 7.62 25.60 0.20 -26.38 16 6 H 0.06 3.13 5.66 -2.91 -0.02 3.12 16 7 C 0.02 0.99 5.29 84.65 0.45 1.44 16 8 N -0.91 -51.44 11.75 21.45 0.25 -51.19 16 9 Si 0.94 42.96 29.54 68.60 2.03 44.98 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.53 -19.56 4.80 -878.29 -4.22 -23.77 16 14 C 0.04 1.12 5.25 86.49 0.45 1.58 16 15 C -0.07 -2.13 5.32 30.02 0.16 -1.97 16 16 C -0.04 -1.38 6.92 25.08 0.17 -1.21 16 17 O 0.09 3.35 11.19 81.16 0.91 4.26 16 18 N -0.39 -15.31 12.11 -48.62 -0.59 -15.90 16 19 C 0.04 1.43 6.16 43.12 0.27 1.70 16 20 C 0.14 4.34 5.55 85.56 0.47 4.82 16 21 N -0.54 -14.08 4.72 -899.79 -4.24 -18.32 16 22 C 0.02 0.32 5.64 86.31 0.49 0.81 16 23 C 0.07 1.21 7.01 72.01 0.50 1.71 16 24 O -0.40 -9.01 10.83 -148.98 -1.61 -10.62 16 25 C 0.07 1.45 7.01 72.01 0.50 1.95 16 26 C 0.02 0.38 4.96 86.31 0.43 0.80 16 27 C -0.22 -8.01 4.75 -20.25 -0.10 -8.10 16 28 C 0.13 4.79 5.38 85.24 0.46 5.25 16 29 H 0.05 1.70 4.82 -2.39 -0.01 1.69 16 30 H 0.07 2.03 6.27 -2.38 -0.01 2.02 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 2.43 6.42 -2.38 -0.02 2.41 16 34 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 36 H 0.12 3.11 4.11 -2.39 -0.01 3.10 16 37 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.08 2.89 4.93 -2.39 -0.01 2.87 16 39 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 40 H 0.09 2.74 8.04 -2.39 -0.02 2.72 16 41 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.10 1.79 8.09 -2.38 -0.02 1.77 16 43 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 48 H 0.08 2.17 5.03 -2.39 -0.01 2.16 16 49 H 0.09 2.74 6.78 -2.39 -0.02 2.72 16 50 H 0.08 3.47 5.10 -2.38 -0.01 3.46 16 Total: -1.00 -63.12 366.31 -1.23 -64.35 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.97 Total: 22.33 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.28 Total: -16.12 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -8.80 Total: -109.19 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.70 Total: -6.37 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -63.12 -1.23 -64.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.425 kcal (2) G-P(sol) polarization free energy of solvation -63.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds