Wall clock time and date at job start Tue Mar 31 2020 18:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47656 * 2 1 4 4 H 1.09004 * 109.47259 * 305.63611 * 3 2 1 5 5 C 1.50693 * 109.47693 * 185.62894 * 3 2 1 6 6 O 1.21280 * 120.00227 * 240.00387 * 5 3 2 7 7 N 1.34787 * 119.99786 * 59.99742 * 5 3 2 8 8 C 1.46503 * 119.99639 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.46659 * 180.02562 * 8 7 5 10 10 H 1.08999 * 112.90942 * 316.25309 * 9 8 7 11 11 C 1.53950 * 113.66370 * 87.55326 * 9 8 7 12 12 C 1.53785 * 87.11214 * 139.89124 * 11 9 8 13 13 H 1.09004 * 113.68946 * 220.08227 * 12 11 9 14 14 N 1.46491 * 113.61617 * 89.18083 * 12 11 9 15 15 C 1.36940 * 119.99570 * 107.50458 * 14 12 11 16 16 H 1.08004 * 119.99978 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00016 * 179.97438 * 15 14 12 18 18 N 1.31622 * 120.00062 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00234 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46981 * 60.00181 * 19 17 15 21 21 H 1.48503 * 109.47592 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47330 * 300.00226 * 19 17 15 23 23 C 1.53775 * 113.61057 * 185.00080 * 9 8 7 24 24 C 1.50710 * 109.46889 * 65.62724 * 3 2 1 25 25 C 1.41376 * 128.00297 * 63.54901 * 24 3 2 26 26 C 1.50697 * 126.80313 * 359.97438 * 25 24 3 27 27 N 1.30180 * 106.39250 * 179.97438 * 25 24 3 28 28 O 1.20916 * 111.60168 * 359.97438 * 27 25 24 29 29 C 1.34037 * 111.57335 * 359.76406 * 28 27 25 30 30 C 1.50700 * 126.78355 * 180.28917 * 29 28 27 31 31 H 1.08998 * 109.47086 * 59.99680 * 1 2 3 32 32 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46961 * 300.00199 * 1 2 3 34 34 H 1.09005 * 109.47207 * 240.00029 * 2 1 3 35 35 H 1.08998 * 109.47086 * 120.00320 * 2 1 3 36 36 H 0.96991 * 119.99855 * 0.02562 * 7 5 3 37 37 H 1.09000 * 109.46945 * 60.00414 * 8 7 5 38 38 H 1.08997 * 109.46920 * 300.00184 * 8 7 5 39 39 H 1.09002 * 113.54067 * 25.33766 * 11 9 8 40 40 H 1.09007 * 113.74351 * 254.46877 * 11 9 8 41 41 H 0.97003 * 120.00737 * 287.50987 * 14 12 11 42 42 H 0.96998 * 119.99727 * 179.97438 * 18 17 15 43 43 H 1.09006 * 113.61528 * 105.47281 * 23 9 8 44 44 H 1.08994 * 113.62065 * 334.65247 * 23 9 8 45 45 H 1.09000 * 109.47299 * 95.39853 * 26 25 24 46 46 H 1.09007 * 109.47050 * 215.39268 * 26 25 24 47 47 H 1.09002 * 109.47497 * 335.39085 * 26 25 24 48 48 H 1.08997 * 109.47074 * 264.97630 * 30 29 28 49 49 H 1.09006 * 109.46948 * 24.96994 * 30 29 28 50 50 H 1.08994 * 109.47341 * 144.96561 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5968 1.9847 -0.8352 5 6 3.5406 1.4447 -0.1393 6 8 4.2293 1.9407 0.7270 7 7 4.1172 0.8954 -1.2268 8 6 5.5760 0.8972 -1.3620 9 6 5.9671 0.2185 -2.6763 10 1 5.4060 -0.6968 -2.8646 11 6 6.0042 1.1778 -3.8799 12 6 7.2706 0.4334 -4.3350 13 1 8.0436 1.0890 -4.7361 14 7 6.9963 -0.7177 -5.1985 15 6 7.2832 -0.6539 -6.5360 16 1 7.7119 0.2449 -6.9541 17 6 7.0238 -1.7447 -7.3543 18 7 6.5017 -2.8403 -6.8447 19 14 7.4157 -1.6580 -9.1787 20 1 8.8683 -1.4097 -9.3617 21 1 7.0473 -2.9428 -9.8259 22 1 6.6425 -0.5523 -9.7991 23 6 7.4856 0.0588 -2.8590 24 6 1.6548 2.1115 1.2943 25 6 2.0684 1.7767 2.6041 26 6 2.9995 0.6595 2.9989 27 7 1.4856 2.6248 3.4014 28 8 0.7958 3.4080 2.7910 29 6 0.8372 3.1768 1.4713 30 6 0.1147 3.9480 0.3969 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5664 0.4990 -1.9197 37 1 6.0189 0.3547 -0.5267 38 1 5.9396 1.9247 -1.3617 39 1 6.1840 2.2167 -3.6032 40 1 5.1608 1.0609 -4.5604 41 1 6.6115 -1.5251 -4.8230 42 1 6.3201 -3.6024 -7.4166 43 1 7.8377 -0.9626 -2.7146 44 1 8.0717 0.7910 -2.3036 45 1 4.0129 1.0486 3.0968 46 1 2.6783 0.2385 3.9518 47 1 2.9806 -0.1168 2.2340 48 1 -0.8249 3.4486 0.1607 49 1 -0.0899 4.9587 0.7504 50 1 0.7363 3.9947 -0.4972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263875599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:44 Heat of formation + Delta-G solvation = 37.102337 kcal Electronic energy + Delta-G solvation = -29197.456978 eV Core-core repulsion = 25228.445217 eV Total energy + Delta-G solvation = -3969.011761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.06461 -40.14556 -38.63661 -36.37017 -34.79914 -34.04319 -33.33872 -32.94953 -30.28227 -29.23131 -28.74427 -27.84167 -26.61621 -25.09858 -23.77509 -23.08943 -22.15529 -21.56623 -20.39317 -20.15475 -18.47548 -17.89312 -17.51304 -17.11492 -16.79287 -16.12878 -15.58456 -15.22844 -14.85180 -14.48673 -14.39981 -14.15686 -13.72782 -13.71010 -13.64890 -13.46813 -13.30578 -13.08083 -12.96266 -12.90709 -12.57885 -12.49039 -12.34391 -12.20875 -11.96219 -11.60657 -11.42009 -11.32720 -11.08276 -10.88156 -10.85995 -10.53289 -10.24651 -10.14122 -9.94876 -9.79094 -9.73220 -9.52391 -9.26233 -9.03496 -8.92051 -7.04783 -5.85076 -3.14216 1.28615 2.07249 2.53140 2.91551 3.16708 3.39180 3.43984 3.44662 4.01344 4.24713 4.32287 4.46740 4.51840 4.60986 4.77893 4.84326 4.98934 5.00165 5.03465 5.06012 5.09188 5.15310 5.21106 5.33434 5.39682 5.40978 5.47578 5.49244 5.57423 5.58337 5.66140 5.66468 5.70673 5.79960 5.83658 5.86784 5.91766 6.06429 6.09615 6.16849 6.32787 6.37418 6.54594 6.69378 6.85285 6.99392 7.44738 7.64414 8.14830 8.17637 8.34215 9.44857 10.02119 10.36308 11.37265 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.002137 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.009369 B =13102.033125 C =13492.393785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.029 4.029 4 H 0.108 0.892 5 C 0.514 3.486 6 O -0.533 6.533 7 N -0.722 5.722 8 C 0.132 3.868 9 C -0.120 4.120 10 H 0.093 0.907 11 C -0.168 4.168 12 C 0.167 3.833 13 H 0.062 0.938 14 N -0.705 5.705 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.148 4.148 24 C -0.174 4.174 25 C 0.054 3.946 26 C -0.073 4.073 27 N -0.374 5.374 28 O 0.093 5.907 29 C -0.030 4.030 30 C -0.075 4.075 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.402 0.598 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.385 0.615 42 H 0.257 0.743 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 9.173 16.082 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.051 4.051 4 H 0.126 0.874 5 C 0.299 3.701 6 O -0.409 6.409 7 N -0.374 5.374 8 C 0.009 3.991 9 C -0.138 4.138 10 H 0.111 0.889 11 C -0.209 4.209 12 C 0.055 3.945 13 H 0.080 0.920 14 N -0.344 5.344 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.188 4.188 24 C -0.179 4.179 25 C -0.105 4.105 26 C -0.130 4.130 27 N -0.081 5.081 28 O 0.030 5.970 29 C -0.094 4.094 30 C -0.132 4.132 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.237 0.763 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.224 9.727 17.823 24.231 hybrid contribution -0.080 -0.688 -1.958 2.077 sum -13.304 9.039 15.865 22.592 Atomic orbital electron populations 1.21752 0.94635 1.02219 1.02061 1.21615 0.97109 0.93277 1.03472 1.19654 0.93085 0.97912 0.94482 0.87414 1.20364 0.89738 0.78120 0.81882 1.90706 1.64700 1.44948 1.40586 1.46064 1.08604 1.60186 1.22503 1.21473 0.78899 1.00807 0.97919 1.22736 0.98174 0.99741 0.93179 0.88887 1.23918 1.02800 0.97206 0.96978 1.21050 0.94178 0.90335 0.88941 0.91991 1.42157 1.74431 1.12634 1.05173 1.19244 1.34901 0.98970 0.84318 0.91054 1.24761 1.01637 0.96140 0.98287 1.69648 1.49336 1.04199 1.34914 0.86247 0.78080 0.76673 0.85053 1.21178 1.21666 1.21212 1.23442 0.94050 1.01808 0.99477 1.20195 1.02939 0.99448 0.95271 1.23239 0.99222 0.98546 0.89483 1.20216 0.97591 0.93587 1.01617 1.73810 1.09316 1.04160 1.20852 1.84787 1.51495 1.44280 1.16391 1.24143 1.01218 0.97844 0.86211 1.20347 0.99828 0.99659 0.93364 0.92252 0.92091 0.92718 0.90400 0.90857 0.76346 0.91845 0.91643 0.91475 0.91509 0.78119 0.93370 0.91342 0.90512 0.89476 0.91154 0.90556 0.89324 0.89755 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.73 37.16 0.36 -0.60 16 2 C -0.12 -0.87 5.30 -26.73 -0.14 -1.01 16 3 C -0.03 -0.26 2.46 -92.92 -0.23 -0.49 16 4 H 0.11 0.74 7.24 -51.93 -0.38 0.36 16 5 C 0.51 5.96 6.88 -10.98 -0.08 5.89 16 6 O -0.53 -8.11 14.04 5.56 0.08 -8.03 16 7 N -0.72 -7.76 5.41 -60.29 -0.33 -8.08 16 8 C 0.13 1.63 5.51 -4.04 -0.02 1.61 16 9 C -0.12 -1.66 3.64 -89.72 -0.33 -1.99 16 10 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 11 C -0.17 -2.64 7.44 -25.83 -0.19 -2.83 16 12 C 0.17 3.14 4.56 -67.12 -0.31 2.83 16 13 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 14 N -0.71 -16.83 5.31 -52.63 -0.28 -17.11 16 15 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 16 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 19 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.15 -2.27 7.38 -25.92 -0.19 -2.46 16 24 C -0.17 -1.85 3.54 -104.42 -0.37 -2.22 16 25 C 0.05 0.67 6.66 -82.10 -0.55 0.13 16 26 C -0.07 -0.79 9.03 36.00 0.33 -0.47 16 27 N -0.37 -5.05 12.07 33.42 0.40 -4.65 16 28 O 0.09 1.12 11.20 17.19 0.19 1.31 16 29 C -0.03 -0.29 7.49 -35.30 -0.26 -0.56 16 30 C -0.07 -0.40 10.11 36.01 0.36 -0.03 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.40 7.40 -51.93 -0.38 0.02 16 34 H 0.08 0.51 7.41 -51.93 -0.38 0.13 16 35 H 0.07 0.60 5.72 -51.93 -0.30 0.30 16 36 H 0.40 3.64 7.83 -40.82 -0.32 3.32 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 39 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.38 9.69 7.90 -40.82 -0.32 9.37 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 45 H 0.09 1.05 7.74 -51.93 -0.40 0.65 16 46 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 47 H 0.08 0.75 5.73 -51.93 -0.30 0.45 16 48 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.41 7.56 -51.93 -0.39 0.02 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -32.58 403.07 -8.20 -40.79 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.19 Total: 8.79 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.86 Total: -9.31 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.52 Total: -56.34 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.27 Total: -6.72 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.58 -8.20 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263875599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.888 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds