Wall clock time and date at job start Tue Mar 31 2020 18:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47656 * 2 1 4 4 H 1.09004 * 109.47259 * 305.63611 * 3 2 1 5 5 C 1.50693 * 109.47693 * 185.62894 * 3 2 1 6 6 O 1.21280 * 120.00227 * 240.00387 * 5 3 2 7 7 N 1.34787 * 119.99786 * 59.99742 * 5 3 2 8 8 C 1.46503 * 119.99639 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.46659 * 180.02562 * 8 7 5 10 10 H 1.08999 * 112.90942 * 316.25309 * 9 8 7 11 11 C 1.53950 * 113.66370 * 87.55326 * 9 8 7 12 12 C 1.53785 * 87.11214 * 139.89124 * 11 9 8 13 13 H 1.09004 * 113.68946 * 220.08227 * 12 11 9 14 14 N 1.46491 * 113.61617 * 89.18083 * 12 11 9 15 15 C 1.36940 * 119.99570 * 107.50458 * 14 12 11 16 16 H 1.08004 * 119.99978 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00016 * 179.97438 * 15 14 12 18 18 N 1.31622 * 120.00062 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00234 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46981 * 60.00181 * 19 17 15 21 21 H 1.48503 * 109.47592 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47330 * 300.00226 * 19 17 15 23 23 C 1.53775 * 113.61057 * 185.00080 * 9 8 7 24 24 C 1.50710 * 109.46889 * 65.62724 * 3 2 1 25 25 C 1.41376 * 128.00297 * 63.54901 * 24 3 2 26 26 C 1.50697 * 126.80313 * 359.97438 * 25 24 3 27 27 N 1.30180 * 106.39250 * 179.97438 * 25 24 3 28 28 O 1.20916 * 111.60168 * 359.97438 * 27 25 24 29 29 C 1.34037 * 111.57335 * 359.76406 * 28 27 25 30 30 C 1.50700 * 126.78355 * 180.28917 * 29 28 27 31 31 H 1.08998 * 109.47086 * 59.99680 * 1 2 3 32 32 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46961 * 300.00199 * 1 2 3 34 34 H 1.09005 * 109.47207 * 240.00029 * 2 1 3 35 35 H 1.08998 * 109.47086 * 120.00320 * 2 1 3 36 36 H 0.96991 * 119.99855 * 0.02562 * 7 5 3 37 37 H 1.09000 * 109.46945 * 60.00414 * 8 7 5 38 38 H 1.08997 * 109.46920 * 300.00184 * 8 7 5 39 39 H 1.09002 * 113.54067 * 25.33766 * 11 9 8 40 40 H 1.09007 * 113.74351 * 254.46877 * 11 9 8 41 41 H 0.97003 * 120.00737 * 287.50987 * 14 12 11 42 42 H 0.96998 * 119.99727 * 179.97438 * 18 17 15 43 43 H 1.09006 * 113.61528 * 105.47281 * 23 9 8 44 44 H 1.08994 * 113.62065 * 334.65247 * 23 9 8 45 45 H 1.09000 * 109.47299 * 95.39853 * 26 25 24 46 46 H 1.09007 * 109.47050 * 215.39268 * 26 25 24 47 47 H 1.09002 * 109.47497 * 335.39085 * 26 25 24 48 48 H 1.08997 * 109.47074 * 264.97630 * 30 29 28 49 49 H 1.09006 * 109.46948 * 24.96994 * 30 29 28 50 50 H 1.08994 * 109.47341 * 144.96561 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5968 1.9847 -0.8352 5 6 3.5406 1.4447 -0.1393 6 8 4.2293 1.9407 0.7270 7 7 4.1172 0.8954 -1.2268 8 6 5.5760 0.8972 -1.3620 9 6 5.9671 0.2185 -2.6763 10 1 5.4060 -0.6968 -2.8646 11 6 6.0042 1.1778 -3.8799 12 6 7.2706 0.4334 -4.3350 13 1 8.0436 1.0890 -4.7361 14 7 6.9963 -0.7177 -5.1985 15 6 7.2832 -0.6539 -6.5360 16 1 7.7119 0.2449 -6.9541 17 6 7.0238 -1.7447 -7.3543 18 7 6.5017 -2.8403 -6.8447 19 14 7.4157 -1.6580 -9.1787 20 1 8.8683 -1.4097 -9.3617 21 1 7.0473 -2.9428 -9.8259 22 1 6.6425 -0.5523 -9.7991 23 6 7.4856 0.0588 -2.8590 24 6 1.6548 2.1115 1.2943 25 6 2.0684 1.7767 2.6041 26 6 2.9995 0.6595 2.9989 27 7 1.4856 2.6248 3.4014 28 8 0.7958 3.4080 2.7910 29 6 0.8372 3.1768 1.4713 30 6 0.1147 3.9480 0.3969 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5664 0.4990 -1.9197 37 1 6.0189 0.3547 -0.5267 38 1 5.9396 1.9247 -1.3617 39 1 6.1840 2.2167 -3.6032 40 1 5.1608 1.0609 -4.5604 41 1 6.6115 -1.5251 -4.8230 42 1 6.3201 -3.6024 -7.4166 43 1 7.8377 -0.9626 -2.7146 44 1 8.0717 0.7910 -2.3036 45 1 4.0129 1.0486 3.0968 46 1 2.6783 0.2385 3.9518 47 1 2.9806 -0.1168 2.2340 48 1 -0.8249 3.4486 0.1607 49 1 -0.0899 4.9587 0.7504 50 1 0.7363 3.9947 -0.4972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263875599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:43 Heat of formation + Delta-G solvation = 16.788814 kcal Electronic energy + Delta-G solvation = -29198.337839 eV Core-core repulsion = 25228.445217 eV Total energy + Delta-G solvation = -3969.892622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.91637 -41.09705 -39.93148 -37.16852 -35.99470 -35.10344 -34.71026 -33.69422 -32.04222 -30.03301 -29.60309 -28.71345 -27.55301 -26.40766 -25.63197 -23.85007 -23.24073 -22.56053 -21.20514 -20.99995 -19.80472 -19.32196 -18.74897 -18.18613 -17.62032 -17.08705 -16.65551 -16.45825 -16.05074 -15.69805 -15.58109 -15.19215 -14.94187 -14.71018 -14.56950 -14.26200 -14.20240 -14.09600 -13.80544 -13.74321 -13.65014 -13.28536 -13.23112 -13.08336 -12.93891 -12.89632 -12.84933 -12.59059 -12.21756 -12.18569 -12.05543 -11.95097 -11.57995 -11.49287 -11.44849 -10.98552 -10.87521 -10.80648 -10.64305 -10.04693 -9.99331 -8.97857 -7.93815 -5.21721 0.52393 1.21303 1.49595 1.51540 1.57652 1.64499 2.19770 2.31811 2.57237 3.22071 3.38792 3.54770 3.56890 3.73448 3.79121 3.82245 3.86800 4.00445 4.12183 4.18836 4.24834 4.35407 4.40527 4.43850 4.46661 4.57402 4.62659 4.71903 4.73097 4.76515 4.78621 4.82868 4.85052 4.94581 4.95065 5.02276 5.06097 5.14021 5.17259 5.24732 5.28474 5.32454 5.38130 5.42518 5.51532 5.58515 5.68939 6.30002 6.58875 7.27261 7.35251 7.35479 8.12602 8.34928 9.29157 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.002137 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.009369 B =13102.033125 C =13492.393785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.021 4.021 4 H 0.135 0.865 5 C 0.514 3.486 6 O -0.571 6.571 7 N -0.715 5.715 8 C 0.143 3.857 9 C -0.100 4.100 10 H 0.084 0.916 11 C -0.151 4.151 12 C 0.143 3.857 13 H 0.057 0.943 14 N -0.719 5.719 15 C -0.243 4.243 16 H 0.075 0.925 17 C -0.074 4.074 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.278 1.278 23 C -0.137 4.137 24 C -0.189 4.189 25 C 0.037 3.963 26 C -0.069 4.069 27 N -0.407 5.407 28 O 0.082 5.918 29 C -0.023 4.023 30 C -0.076 4.076 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.056 0.944 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.112 0.888 49 H 0.095 0.905 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 10.397 15.303 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.042 4.042 4 H 0.153 0.847 5 C 0.301 3.699 6 O -0.450 6.450 7 N -0.366 5.366 8 C 0.019 3.981 9 C -0.119 4.119 10 H 0.103 0.897 11 C -0.192 4.192 12 C 0.033 3.967 13 H 0.075 0.925 14 N -0.357 5.357 15 C -0.374 4.374 16 H 0.093 0.907 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.800 3.200 20 H -0.206 1.206 21 H -0.223 1.223 22 H -0.204 1.204 23 C -0.176 4.176 24 C -0.193 4.193 25 C -0.122 4.122 26 C -0.126 4.126 27 N -0.116 5.116 28 O 0.021 5.979 29 C -0.086 4.086 30 C -0.133 4.133 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.249 0.751 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.130 0.870 49 H 0.114 0.886 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.272 10.998 17.048 24.805 hybrid contribution 0.275 -0.985 -1.671 1.958 sum -13.997 10.014 15.378 23.079 Atomic orbital electron populations 1.21721 0.93640 1.02574 1.02314 1.21628 0.97908 0.92267 1.03491 1.19691 0.90968 0.99006 0.94545 0.84697 1.20825 0.90812 0.77130 0.81156 1.90701 1.65796 1.46662 1.41869 1.45967 1.08048 1.59907 1.22711 1.21243 0.79951 1.00328 0.96590 1.22507 0.97080 0.98949 0.93351 0.89747 1.23721 1.00090 0.98410 0.96961 1.21383 0.95758 0.89458 0.90127 0.92500 1.42276 1.74747 1.13802 1.04895 1.19619 1.33286 0.98750 0.85792 0.90690 1.25516 1.02673 0.96142 1.02267 1.69794 1.51306 1.04775 1.35979 0.85255 0.77985 0.76359 0.80418 1.20622 1.22288 1.20364 1.23349 0.95488 1.01850 0.96915 1.20410 1.03518 1.00150 0.95202 1.23592 0.99333 0.98670 0.90568 1.20190 0.96477 0.93554 1.02406 1.73790 1.10616 1.05185 1.22033 1.84737 1.51429 1.44148 1.17633 1.24922 1.00404 0.97373 0.85928 1.20614 1.00547 0.99929 0.92176 0.90619 0.91757 0.93764 0.89279 0.91958 0.75124 0.92075 0.91771 0.89240 0.93044 0.79287 0.94015 0.92499 0.87974 0.91088 0.90367 0.89684 0.86988 0.88637 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.73 71.98 0.70 -0.82 16 2 C -0.12 -1.47 5.30 30.59 0.16 -1.31 16 3 C -0.02 -0.32 2.46 -12.29 -0.03 -0.35 16 4 H 0.14 1.34 7.24 -2.38 -0.02 1.32 16 5 C 0.51 11.05 6.88 87.65 0.60 11.65 16 6 O -0.57 -16.92 14.04 -3.03 -0.04 -16.96 16 7 N -0.71 -13.79 5.41 -463.05 -2.51 -16.29 16 8 C 0.14 3.22 5.51 86.38 0.48 3.70 16 9 C -0.10 -2.60 3.64 -10.21 -0.04 -2.64 16 10 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 11 C -0.15 -4.46 7.44 31.18 0.23 -4.23 16 12 C 0.14 5.21 4.56 45.52 0.21 5.42 16 13 H 0.06 2.11 8.10 -2.38 -0.02 2.09 16 14 N -0.72 -34.33 5.31 -320.44 -1.70 -36.03 16 15 C -0.24 -12.99 9.97 84.03 0.84 -12.15 16 16 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 17 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 18 N -0.97 -57.22 13.06 21.65 0.28 -56.94 16 19 Si 0.97 44.73 29.55 68.60 2.03 46.75 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C -0.14 -3.97 7.38 31.12 0.23 -3.74 16 24 C -0.19 -3.76 3.54 -19.73 -0.07 -3.83 16 25 C 0.04 0.92 6.66 43.57 0.29 1.21 16 26 C -0.07 -1.53 9.03 71.23 0.64 -0.89 16 27 N -0.41 -11.15 12.07 -49.57 -0.60 -11.75 16 28 O 0.08 1.93 11.20 71.67 0.80 2.73 16 29 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 30 C -0.08 -0.57 10.11 71.24 0.72 0.15 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.04 0.56 7.40 -2.39 -0.02 0.55 16 34 H 0.09 0.94 7.41 -2.38 -0.02 0.92 16 35 H 0.06 0.94 5.72 -2.39 -0.01 0.93 16 36 H 0.41 6.37 7.83 -92.71 -0.73 5.65 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.52 7.84 -2.39 -0.02 1.50 16 39 H 0.09 2.27 7.90 -2.39 -0.02 2.25 16 40 H 0.05 1.69 8.14 -2.38 -0.02 1.68 16 41 H 0.37 19.13 7.90 -92.71 -0.73 18.40 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.10 2.47 8.10 -2.39 -0.02 2.45 16 45 H 0.07 1.79 7.74 -2.39 -0.02 1.77 16 46 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.08 1.67 5.73 -2.39 -0.01 1.65 16 48 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 50 H 0.10 0.56 7.56 -2.39 -0.02 0.54 16 Total: -1.00 -71.64 403.07 3.38 -68.26 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.50 Total: 31.90 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 5.62 Total: -11.67 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.52 Total: -121.01 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.76 Total: -14.23 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.64 3.38 -68.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263875599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.045 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds