Wall clock time and date at job start Tue Mar 31 2020 18:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46736 * 2 1 4 4 H 1.08994 * 109.46633 * 305.61619 * 3 2 1 5 5 C 1.50700 * 109.46922 * 65.61804 * 3 2 1 6 6 O 1.21275 * 120.00223 * 22.43588 * 5 3 2 7 7 N 1.34772 * 119.99677 * 202.42741 * 5 3 2 8 8 C 1.46497 * 120.00173 * 174.98440 * 7 5 3 9 9 C 1.53007 * 109.47489 * 180.02562 * 8 7 5 10 10 H 1.08999 * 112.84759 * 316.19708 * 9 8 7 11 11 C 1.53782 * 113.68925 * 87.46546 * 9 8 7 12 12 C 1.53778 * 87.07960 * 139.99501 * 11 9 8 13 13 H 1.09009 * 113.68937 * 220.01141 * 12 11 9 14 14 N 1.46494 * 113.61796 * 89.11307 * 12 11 9 15 15 C 1.36938 * 120.00040 * 107.50069 * 14 12 11 16 16 H 1.08007 * 119.99773 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00327 * 180.02562 * 15 14 12 18 18 N 1.31616 * 119.99778 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46971 * 179.97438 * 19 17 15 21 21 H 1.48502 * 109.47187 * 60.00215 * 19 17 15 22 22 H 1.48489 * 109.47366 * 300.00168 * 19 17 15 23 23 C 1.53780 * 113.61276 * 185.00014 * 9 8 7 24 24 C 1.50698 * 109.46793 * 185.61762 * 3 2 1 25 25 C 1.41379 * 128.00991 * 299.67784 * 24 3 2 26 26 C 1.50704 * 126.80175 * 0.03653 * 25 24 3 27 27 N 1.30176 * 106.39723 * 179.89450 * 25 24 3 28 28 O 1.20928 * 111.60220 * 0.39236 * 27 25 24 29 29 C 1.34032 * 111.56806 * 359.74355 * 28 27 25 30 30 C 1.50701 * 126.77841 * 179.97438 * 29 28 27 31 31 H 1.09003 * 109.46369 * 174.71089 * 1 2 3 32 32 H 1.08999 * 109.47303 * 294.70716 * 1 2 3 33 33 H 1.08995 * 109.47148 * 54.71330 * 1 2 3 34 34 H 1.09000 * 109.47248 * 239.99910 * 2 1 3 35 35 H 1.09001 * 109.47357 * 119.99747 * 2 1 3 36 36 H 0.97005 * 120.00163 * 354.99197 * 7 5 3 37 37 H 1.09000 * 109.46836 * 60.00255 * 8 7 5 38 38 H 1.08994 * 109.47158 * 300.00568 * 8 7 5 39 39 H 1.09002 * 113.61463 * 25.44408 * 11 9 8 40 40 H 1.08994 * 113.61367 * 254.54338 * 11 9 8 41 41 H 0.96999 * 120.00162 * 287.50678 * 14 12 11 42 42 H 0.97000 * 120.00434 * 359.97438 * 18 17 15 43 43 H 1.09001 * 113.61074 * 105.39065 * 23 9 8 44 44 H 1.08997 * 113.61487 * 334.48889 * 23 9 8 45 45 H 1.08998 * 109.47394 * 90.00001 * 26 25 24 46 46 H 1.08996 * 109.47184 * 210.00543 * 26 25 24 47 47 H 1.09002 * 109.46780 * 329.99499 * 26 25 24 48 48 H 1.08996 * 109.47249 * 270.00107 * 30 29 28 49 49 H 1.09001 * 109.46880 * 30.00510 * 30 29 28 50 50 H 1.09002 * 109.47033 * 149.99696 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5968 1.9845 -0.8354 5 6 1.6543 2.1117 1.2941 6 8 1.4124 1.4408 2.2750 7 7 1.5785 3.4556 1.3614 8 6 1.0981 4.1018 2.5852 9 6 1.1096 5.6204 2.3984 10 1 2.0180 5.9806 1.9156 11 6 -0.1815 6.1760 1.7745 12 6 -0.0593 7.3500 2.7602 13 1 -1.0120 7.6656 3.1857 14 7 0.7321 8.4696 2.2442 15 6 0.1121 9.6329 1.8733 16 1 -0.9604 9.7250 1.9616 17 6 0.8619 10.6936 1.3840 18 7 2.1688 10.5810 1.2759 19 14 0.0160 12.2801 0.8774 20 1 1.0312 13.2495 0.3929 21 1 -0.6988 12.8548 2.0453 22 1 -0.9569 11.9975 -0.2082 23 6 0.7373 6.4003 3.6704 24 6 3.5405 1.4449 -0.1391 25 6 4.4959 0.8634 0.7257 26 6 4.2182 0.1012 1.9958 27 7 5.6628 1.1142 0.2060 28 8 5.5668 1.7522 -0.8167 29 6 4.2865 2.0097 -1.1185 30 6 3.7774 2.7767 -2.3117 31 1 -0.3632 -1.0234 -0.0947 32 1 -0.3634 0.4295 0.9336 33 1 -0.3633 0.5936 -0.8388 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.8419 3.9950 0.5994 37 1 1.7485 3.8328 3.4174 38 1 0.0817 3.7698 2.7964 39 1 -1.0557 5.5487 1.9488 40 1 -0.0709 6.4691 0.7306 41 1 1.6954 8.3869 2.1653 42 1 2.6081 9.7571 1.5387 43 1 1.5896 6.8746 4.1569 44 1 0.1143 5.8343 4.3630 45 1 4.1035 -0.9581 1.7662 46 1 5.0489 0.2349 2.6888 47 1 3.3015 0.4758 2.4512 48 1 3.7028 3.8343 -2.0589 49 1 4.4673 2.6503 -3.1461 50 1 2.7940 2.4000 -2.5931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263875600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:46 Heat of formation + Delta-G solvation = 34.135836 kcal Electronic energy + Delta-G solvation = -29508.198443 eV Core-core repulsion = 25539.058044 eV Total energy + Delta-G solvation = -3969.140399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.18756 -40.26739 -38.77768 -36.21757 -34.86734 -34.16068 -33.56893 -33.22393 -30.18863 -29.24292 -28.76836 -27.69551 -26.62713 -25.20019 -23.61735 -22.74521 -22.59176 -21.68023 -20.43897 -20.14975 -18.67146 -17.97656 -17.73947 -17.35088 -16.76827 -16.13520 -15.80092 -15.12514 -14.90892 -14.64307 -14.42392 -14.02206 -13.78459 -13.75772 -13.62024 -13.60346 -13.50059 -13.27046 -13.14127 -12.76836 -12.72407 -12.56807 -12.25768 -12.09256 -11.83588 -11.65549 -11.54411 -11.24532 -11.05061 -10.98707 -10.79582 -10.44043 -10.34761 -10.09341 -10.00828 -9.86731 -9.72151 -9.34076 -9.19995 -9.07632 -8.93750 -7.12631 -6.17849 -3.18633 1.16060 1.90502 2.43336 2.86665 3.06971 3.47709 3.50811 3.68486 3.92425 4.15805 4.33972 4.45287 4.56115 4.60018 4.79281 4.86850 4.92499 4.94762 5.01791 5.06879 5.08394 5.11667 5.28137 5.31311 5.35565 5.41259 5.41885 5.46790 5.47756 5.52671 5.54629 5.67101 5.72653 5.76738 5.84829 5.89449 5.92519 6.00152 6.05454 6.08100 6.22200 6.31532 6.45812 6.59425 6.73631 6.88937 7.38010 7.75855 8.05013 8.07377 8.67432 9.14267 10.00503 10.14834 11.29953 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.002586 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.490408 B =10824.519299 C =11691.196957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.027 4.027 4 H 0.102 0.898 5 C 0.523 3.477 6 O -0.535 6.535 7 N -0.721 5.721 8 C 0.131 3.869 9 C -0.120 4.120 10 H 0.089 0.911 11 C -0.167 4.167 12 C 0.173 3.827 13 H 0.064 0.936 14 N -0.717 5.717 15 C -0.335 4.335 16 H 0.066 0.934 17 C -0.044 4.044 18 N -0.942 5.942 19 Si 1.080 2.920 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.295 1.295 23 C -0.149 4.149 24 C -0.201 4.201 25 C 0.038 3.962 26 C -0.091 4.091 27 N -0.367 5.367 28 O 0.099 5.901 29 C -0.018 4.018 30 C -0.080 4.080 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.401 0.599 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.368 0.632 42 H 0.254 0.746 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 -22.410 -5.382 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.049 4.049 4 H 0.121 0.879 5 C 0.308 3.692 6 O -0.413 6.413 7 N -0.371 5.371 8 C 0.008 3.992 9 C -0.138 4.138 10 H 0.107 0.893 11 C -0.208 4.208 12 C 0.060 3.940 13 H 0.082 0.918 14 N -0.357 5.357 15 C -0.466 4.466 16 H 0.084 0.916 17 C -0.241 4.241 18 N -0.587 5.587 19 Si 0.911 3.089 20 H -0.210 1.210 21 H -0.222 1.222 22 H -0.222 1.222 23 C -0.189 4.189 24 C -0.205 4.205 25 C -0.121 4.121 26 C -0.148 4.148 27 N -0.073 5.073 28 O 0.035 5.965 29 C -0.082 4.082 30 C -0.138 4.138 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.201 0.799 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.862 -21.545 -4.911 22.114 hybrid contribution -0.509 -1.281 0.138 1.386 sum 0.353 -22.826 -4.773 23.322 Atomic orbital electron populations 1.21818 0.94966 1.02056 1.02408 1.21412 0.96379 0.93139 1.03208 1.19678 0.89134 0.98982 0.97057 0.87949 1.20316 0.76744 0.82353 0.89765 1.90637 1.49561 1.63841 1.37230 1.46090 1.66484 1.06391 1.18157 1.21477 0.99343 0.92121 0.86233 1.22701 0.99767 0.91690 0.99682 0.89252 1.23873 0.95381 1.00227 1.01302 1.20979 0.94438 0.86557 0.91980 0.91829 1.42175 1.05348 1.11731 1.76449 1.20085 0.93275 0.92699 1.40505 0.91573 1.25807 0.96289 1.02133 0.99886 1.70896 1.08322 1.28678 1.50784 0.83237 0.74378 0.75371 0.75936 1.20999 1.22185 1.22194 1.23465 1.01072 0.98398 0.95938 1.20429 0.96095 1.06558 0.97416 1.23451 0.88009 1.00976 0.99701 1.20457 1.04407 0.98921 0.91040 1.73873 1.23115 1.12253 0.98095 1.84830 1.26640 1.53210 1.31816 1.24298 0.83809 1.00658 0.99438 1.20443 1.01799 0.99496 0.92032 0.92294 0.91811 0.92833 0.91277 0.90205 0.76493 0.91813 0.91441 0.91234 0.91574 0.79884 0.93442 0.91507 0.90269 0.90285 0.90846 0.88019 0.88772 0.89440 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.62 37.16 0.36 -0.90 16 2 C -0.10 -0.88 4.95 -26.73 -0.13 -1.01 16 3 C -0.03 -0.24 2.48 -92.92 -0.23 -0.47 16 4 H 0.10 0.70 7.13 -51.93 -0.37 0.33 16 5 C 0.52 6.05 5.78 -10.99 -0.06 5.99 16 6 O -0.54 -7.54 13.00 5.56 0.07 -7.47 16 7 N -0.72 -8.15 5.55 -60.30 -0.33 -8.49 16 8 C 0.13 1.66 5.52 -4.04 -0.02 1.63 16 9 C -0.12 -1.70 3.63 -89.80 -0.33 -2.03 16 10 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 11 C -0.17 -2.65 7.43 -25.92 -0.19 -2.84 16 12 C 0.17 3.30 4.56 -67.12 -0.31 3.00 16 13 H 0.06 1.25 8.10 -51.92 -0.42 0.83 16 14 N -0.72 -17.33 5.31 -52.64 -0.28 -17.61 16 15 C -0.33 -9.18 9.97 -15.06 -0.15 -9.33 16 16 H 0.07 1.79 7.83 -52.48 -0.41 1.37 16 17 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 18 N -0.94 -28.48 13.70 55.49 0.76 -27.72 16 19 Si 1.08 25.32 29.92 -169.99 -5.09 20.23 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.15 -2.33 7.39 -25.92 -0.19 -2.52 16 24 C -0.20 -2.04 4.91 -104.42 -0.51 -2.56 16 25 C 0.04 0.45 7.20 -82.10 -0.59 -0.14 16 26 C -0.09 -0.97 9.26 36.01 0.33 -0.64 16 27 N -0.37 -4.86 12.07 33.42 0.40 -4.46 16 28 O 0.10 1.17 11.20 17.20 0.19 1.36 16 29 C -0.02 -0.17 7.49 -35.30 -0.26 -0.43 16 30 C -0.08 -0.44 10.17 36.01 0.37 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.64 6.96 -51.93 -0.36 0.28 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.77 6.46 -51.93 -0.34 0.44 16 36 H 0.40 3.99 8.48 -40.82 -0.35 3.64 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.86 7.85 -51.93 -0.41 0.46 16 39 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.37 9.15 6.73 -40.82 -0.27 8.87 16 42 H 0.25 7.56 6.77 -40.82 -0.28 7.28 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 1.20 5.14 -51.93 -0.27 0.93 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.35 7.39 -51.93 -0.38 -0.03 16 LS Contribution 402.34 15.07 6.06 6.06 Total: -1.00 -33.04 402.34 -8.36 -41.40 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -8.13 Total: 10.34 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.02 Total: -13.65 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.55 Total: -58.28 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: 0.26 Total: -6.11 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.23 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.04 -8.36 -41.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263875600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.539 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds