Wall clock time and date at job start Tue Mar 31 2020 18:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46736 * 2 1 4 4 H 1.08994 * 109.46633 * 305.61619 * 3 2 1 5 5 C 1.50700 * 109.46922 * 65.61804 * 3 2 1 6 6 O 1.21275 * 120.00223 * 22.43588 * 5 3 2 7 7 N 1.34772 * 119.99677 * 202.42741 * 5 3 2 8 8 C 1.46497 * 120.00173 * 174.98440 * 7 5 3 9 9 C 1.53007 * 109.47489 * 180.02562 * 8 7 5 10 10 H 1.08999 * 112.84759 * 316.19708 * 9 8 7 11 11 C 1.53782 * 113.68925 * 87.46546 * 9 8 7 12 12 C 1.53778 * 87.07960 * 139.99501 * 11 9 8 13 13 H 1.09009 * 113.68937 * 220.01141 * 12 11 9 14 14 N 1.46494 * 113.61796 * 89.11307 * 12 11 9 15 15 C 1.36938 * 120.00040 * 107.50069 * 14 12 11 16 16 H 1.08007 * 119.99773 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00327 * 180.02562 * 15 14 12 18 18 N 1.31616 * 119.99778 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46971 * 179.97438 * 19 17 15 21 21 H 1.48502 * 109.47187 * 60.00215 * 19 17 15 22 22 H 1.48489 * 109.47366 * 300.00168 * 19 17 15 23 23 C 1.53780 * 113.61276 * 185.00014 * 9 8 7 24 24 C 1.50698 * 109.46793 * 185.61762 * 3 2 1 25 25 C 1.41379 * 128.00991 * 299.67784 * 24 3 2 26 26 C 1.50704 * 126.80175 * 0.03653 * 25 24 3 27 27 N 1.30176 * 106.39723 * 179.89450 * 25 24 3 28 28 O 1.20928 * 111.60220 * 0.39236 * 27 25 24 29 29 C 1.34032 * 111.56806 * 359.74355 * 28 27 25 30 30 C 1.50701 * 126.77841 * 179.97438 * 29 28 27 31 31 H 1.09003 * 109.46369 * 174.71089 * 1 2 3 32 32 H 1.08999 * 109.47303 * 294.70716 * 1 2 3 33 33 H 1.08995 * 109.47148 * 54.71330 * 1 2 3 34 34 H 1.09000 * 109.47248 * 239.99910 * 2 1 3 35 35 H 1.09001 * 109.47357 * 119.99747 * 2 1 3 36 36 H 0.97005 * 120.00163 * 354.99197 * 7 5 3 37 37 H 1.09000 * 109.46836 * 60.00255 * 8 7 5 38 38 H 1.08994 * 109.47158 * 300.00568 * 8 7 5 39 39 H 1.09002 * 113.61463 * 25.44408 * 11 9 8 40 40 H 1.08994 * 113.61367 * 254.54338 * 11 9 8 41 41 H 0.96999 * 120.00162 * 287.50678 * 14 12 11 42 42 H 0.97000 * 120.00434 * 359.97438 * 18 17 15 43 43 H 1.09001 * 113.61074 * 105.39065 * 23 9 8 44 44 H 1.08997 * 113.61487 * 334.48889 * 23 9 8 45 45 H 1.08998 * 109.47394 * 90.00001 * 26 25 24 46 46 H 1.08996 * 109.47184 * 210.00543 * 26 25 24 47 47 H 1.09002 * 109.46780 * 329.99499 * 26 25 24 48 48 H 1.08996 * 109.47249 * 270.00107 * 30 29 28 49 49 H 1.09001 * 109.46880 * 30.00510 * 30 29 28 50 50 H 1.09002 * 109.47033 * 149.99696 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5968 1.9845 -0.8354 5 6 1.6543 2.1117 1.2941 6 8 1.4124 1.4408 2.2750 7 7 1.5785 3.4556 1.3614 8 6 1.0981 4.1018 2.5852 9 6 1.1096 5.6204 2.3984 10 1 2.0180 5.9806 1.9156 11 6 -0.1815 6.1760 1.7745 12 6 -0.0593 7.3500 2.7602 13 1 -1.0120 7.6656 3.1857 14 7 0.7321 8.4696 2.2442 15 6 0.1121 9.6329 1.8733 16 1 -0.9604 9.7250 1.9616 17 6 0.8619 10.6936 1.3840 18 7 2.1688 10.5810 1.2759 19 14 0.0160 12.2801 0.8774 20 1 1.0312 13.2495 0.3929 21 1 -0.6988 12.8548 2.0453 22 1 -0.9569 11.9975 -0.2082 23 6 0.7373 6.4003 3.6704 24 6 3.5405 1.4449 -0.1391 25 6 4.4959 0.8634 0.7257 26 6 4.2182 0.1012 1.9958 27 7 5.6628 1.1142 0.2060 28 8 5.5668 1.7522 -0.8167 29 6 4.2865 2.0097 -1.1185 30 6 3.7774 2.7767 -2.3117 31 1 -0.3632 -1.0234 -0.0947 32 1 -0.3634 0.4295 0.9336 33 1 -0.3633 0.5936 -0.8388 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.8419 3.9950 0.5994 37 1 1.7485 3.8328 3.4174 38 1 0.0817 3.7698 2.7964 39 1 -1.0557 5.5487 1.9488 40 1 -0.0709 6.4691 0.7306 41 1 1.6954 8.3869 2.1653 42 1 2.6081 9.7571 1.5387 43 1 1.5896 6.8746 4.1569 44 1 0.1143 5.8343 4.3630 45 1 4.1035 -0.9581 1.7662 46 1 5.0489 0.2349 2.6888 47 1 3.3015 0.4758 2.4512 48 1 3.7028 3.8343 -2.0589 49 1 4.4673 2.6503 -3.1461 50 1 2.7940 2.4000 -2.5931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263875600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:45 Heat of formation + Delta-G solvation = 13.567799 kcal Electronic energy + Delta-G solvation = -29509.090340 eV Core-core repulsion = 25539.058044 eV Total energy + Delta-G solvation = -3970.032296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.03435 -41.21733 -40.10286 -37.05903 -36.21067 -35.19364 -34.93729 -33.90454 -31.90995 -30.12483 -29.60674 -28.65297 -27.53050 -26.53243 -25.57682 -23.76217 -23.47193 -22.75362 -21.19833 -21.07589 -20.05968 -19.43437 -18.81069 -18.52702 -17.57974 -17.20773 -16.77582 -16.67337 -16.11074 -15.65450 -15.59184 -15.28511 -15.09158 -14.90559 -14.63486 -14.41192 -14.20062 -14.16428 -13.93076 -13.65810 -13.56391 -13.40479 -13.32583 -13.28551 -12.95446 -12.80188 -12.53897 -12.48337 -12.31101 -11.98667 -11.93795 -11.81880 -11.75502 -11.56051 -11.36021 -11.16407 -10.99850 -10.85409 -10.68658 -10.13303 -10.03191 -9.11488 -8.39281 -5.33643 0.40153 1.05438 1.56004 1.59742 1.69041 1.85472 2.15518 2.18913 2.71223 3.11979 3.38583 3.42988 3.56462 3.60319 3.69672 3.72168 3.79107 3.85601 3.99357 4.16374 4.22429 4.23147 4.30738 4.33545 4.49666 4.53018 4.57692 4.64088 4.66664 4.69217 4.72989 4.74176 4.84392 4.85542 4.88674 4.89954 5.00953 5.07677 5.12797 5.21192 5.22077 5.26415 5.30609 5.39216 5.49183 5.50670 5.66397 6.49013 6.49757 7.09455 7.18322 7.24018 7.99922 8.10773 9.12188 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.002586 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.490408 B =10824.519299 C =11691.196957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.018 4.018 4 H 0.131 0.869 5 C 0.521 3.479 6 O -0.562 6.562 7 N -0.719 5.719 8 C 0.142 3.858 9 C -0.101 4.101 10 H 0.076 0.924 11 C -0.148 4.148 12 C 0.147 3.853 13 H 0.057 0.943 14 N -0.732 5.732 15 C -0.332 4.332 16 H 0.067 0.933 17 C -0.103 4.103 18 N -0.975 5.975 19 Si 1.127 2.873 20 H -0.294 1.294 21 H -0.279 1.279 22 H -0.276 1.276 23 C -0.137 4.137 24 C -0.210 4.210 25 C 0.023 3.977 26 C -0.087 4.087 27 N -0.399 5.399 28 O 0.085 5.915 29 C -0.007 4.007 30 C -0.083 4.083 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.409 0.591 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.360 0.640 42 H 0.244 0.756 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 -23.230 -6.661 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.140 4.140 3 C -0.040 4.040 4 H 0.149 0.851 5 C 0.308 3.692 6 O -0.441 6.441 7 N -0.370 5.370 8 C 0.018 3.982 9 C -0.120 4.120 10 H 0.095 0.905 11 C -0.188 4.188 12 C 0.037 3.963 13 H 0.075 0.925 14 N -0.372 5.372 15 C -0.464 4.464 16 H 0.085 0.915 17 C -0.294 4.294 18 N -0.623 5.623 19 Si 0.951 3.049 20 H -0.220 1.220 21 H -0.206 1.206 22 H -0.202 1.202 23 C -0.177 4.177 24 C -0.215 4.215 25 C -0.135 4.135 26 C -0.144 4.144 27 N -0.108 5.108 28 O 0.023 5.977 29 C -0.071 4.071 30 C -0.139 4.139 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.193 0.807 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.125 0.875 45 H 0.111 0.889 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.820 -22.410 -6.189 23.264 hybrid contribution -0.039 -1.088 0.583 1.235 sum -0.859 -23.498 -5.606 24.173 Atomic orbital electron populations 1.21785 0.94573 1.02757 1.01768 1.21409 0.96626 0.92735 1.03193 1.19707 0.88434 0.99397 0.96438 0.85107 1.20769 0.75983 0.82112 0.90375 1.90631 1.50673 1.64366 1.38433 1.46052 1.66360 1.06583 1.17969 1.21256 0.99583 0.90624 0.86700 1.22462 0.98466 0.92780 0.98264 0.90541 1.23671 0.97176 0.98613 0.99370 1.21330 0.94227 0.86545 0.94206 0.92499 1.42311 1.05324 1.12467 1.77137 1.20419 0.93454 0.93700 1.38796 0.91462 1.27167 0.96237 1.05438 1.00590 1.71002 1.09503 1.28513 1.53257 0.82638 0.73726 0.71909 0.76592 1.22046 1.20556 1.20164 1.23381 1.00387 0.97518 0.96381 1.20533 0.96472 1.07006 0.97442 1.23780 0.88441 1.01104 1.00216 1.20422 1.03608 0.99696 0.90693 1.73865 1.24075 1.13714 0.99098 1.84787 1.28034 1.53288 1.31562 1.24995 0.82703 0.99423 0.99944 1.20714 1.03167 0.99309 0.90759 0.91422 0.94043 0.91344 0.89712 0.91812 0.75577 0.92477 0.90884 0.88652 0.93162 0.80750 0.94610 0.92832 0.87489 0.88855 0.91143 0.89090 0.88073 0.88094 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.62 71.98 0.69 -1.44 16 2 C -0.10 -1.52 4.95 30.60 0.15 -1.37 16 3 C -0.02 -0.29 2.48 -12.28 -0.03 -0.32 16 4 H 0.13 1.30 7.13 -2.39 -0.02 1.28 16 5 C 0.52 11.24 5.78 87.66 0.51 11.75 16 6 O -0.56 -15.37 13.00 -3.01 -0.04 -15.41 16 7 N -0.72 -14.92 5.55 -463.07 -2.57 -17.49 16 8 C 0.14 3.32 5.52 86.38 0.48 3.79 16 9 C -0.10 -2.73 3.63 -10.27 -0.04 -2.77 16 10 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 11 C -0.15 -4.43 7.43 31.12 0.23 -4.19 16 12 C 0.15 5.50 4.56 45.52 0.21 5.71 16 13 H 0.06 2.18 8.10 -2.38 -0.02 2.16 16 14 N -0.73 -35.65 5.31 -320.44 -1.70 -37.36 16 15 C -0.33 -18.24 9.97 84.03 0.84 -17.41 16 16 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 17 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 18 N -0.97 -59.94 13.70 21.65 0.30 -59.64 16 19 Si 1.13 50.78 29.92 68.60 2.05 52.83 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 23 C -0.14 -4.11 7.39 31.12 0.23 -3.88 16 24 C -0.21 -3.96 4.91 -19.73 -0.10 -4.05 16 25 C 0.02 0.55 7.20 43.58 0.31 0.86 16 26 C -0.09 -1.86 9.26 71.24 0.66 -1.20 16 27 N -0.40 -10.59 12.07 -49.55 -0.60 -11.19 16 28 O 0.08 1.97 11.20 71.70 0.80 2.77 16 29 C -0.01 -0.12 7.49 25.04 0.19 0.07 16 30 C -0.08 -0.66 10.17 71.24 0.72 0.07 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 0.77 6.96 -2.39 -0.02 0.76 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.17 6.46 -2.39 -0.02 1.16 16 36 H 0.41 7.25 8.48 -92.70 -0.79 6.46 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.67 7.85 -2.39 -0.02 1.65 16 39 H 0.10 2.40 7.90 -2.39 -0.02 2.38 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 41 H 0.36 18.35 6.73 -92.71 -0.62 17.73 16 42 H 0.24 14.90 6.77 -92.71 -0.63 14.27 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.11 2.62 8.10 -2.39 -0.02 2.61 16 45 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.09 2.16 5.14 -2.39 -0.01 2.15 16 48 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.12 0.40 7.39 -2.39 -0.02 0.38 16 Total: -1.00 -72.84 402.34 3.45 -69.39 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -0.31 Total: 35.87 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 5.52 Total: -19.78 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -4.57 Total: -125.68 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.76 Total: -12.64 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.83 kcal Total: -72.84 3.45 -69.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263875600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.956 kcal (2) G-P(sol) polarization free energy of solvation -72.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds