Wall clock time and date at job start Tue Mar 31 2020 19:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47518 * 2 1 4 4 N 1.46902 * 109.47369 * 120.00369 * 2 1 3 5 5 C 1.46892 * 110.99989 * 274.20068 * 4 2 1 6 6 C 1.52999 * 109.47606 * 76.96790 * 5 4 2 7 7 C 1.53000 * 109.47613 * 173.34073 * 6 5 4 8 8 N 1.46496 * 109.47024 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99609 * 180.02562 * 8 7 6 10 10 O 1.21612 * 120.00745 * 359.97438 * 9 8 7 11 11 C 1.43204 * 119.99670 * 180.27338 * 9 8 7 12 12 C 8.65435 * 57.71581 * 69.02237 * 2 1 3 13 13 C 9.90719 * 52.93391 * 68.91503 * 2 1 3 14 14 C 1.52997 * 117.50263 * 332.29706 * 13 12 11 15 15 C 1.53002 * 117.49766 * 263.63849 * 13 12 11 16 16 C 1.46899 * 110.99927 * 150.24642 * 4 2 1 17 17 C 1.50701 * 109.47029 * 286.80434 * 16 4 2 18 18 O 1.21289 * 120.00148 * 1.38464 * 17 16 4 19 19 N 1.34780 * 119.99760 * 181.38676 * 17 16 4 20 20 C 1.37096 * 119.99590 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00514 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99744 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00026 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00278 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46752 * 89.99906 * 24 22 20 26 26 H 1.48494 * 109.47191 * 210.00091 * 24 22 20 27 27 H 1.48502 * 109.46819 * 330.00658 * 24 22 20 28 28 H 1.09003 * 109.46634 * 313.57009 * 1 2 3 29 29 H 1.08991 * 109.47318 * 73.56737 * 1 2 3 30 30 H 1.08996 * 109.47126 * 193.56936 * 1 2 3 31 31 H 1.09003 * 109.47169 * 240.00312 * 2 1 3 32 32 H 1.08996 * 109.47299 * 169.02753 * 3 2 1 33 33 H 1.09004 * 109.47040 * 289.03337 * 3 2 1 34 34 H 1.09002 * 109.46631 * 49.02726 * 3 2 1 35 35 H 1.09010 * 109.47182 * 316.96891 * 5 4 2 36 36 H 1.09003 * 109.47666 * 196.97413 * 5 4 2 37 37 H 1.09004 * 109.46617 * 53.34315 * 6 5 4 38 38 H 1.08999 * 109.47073 * 293.34761 * 6 5 4 39 39 H 1.08993 * 109.46860 * 59.99992 * 7 6 5 40 40 H 1.08996 * 109.46746 * 300.00342 * 7 6 5 41 41 H 0.96997 * 120.00132 * 0.02562 * 8 7 6 42 42 H 1.09006 * 115.54509 * 117.97467 * 13 12 11 43 43 H 1.09000 * 117.49549 * 0.02562 * 14 13 12 44 44 H 1.08999 * 117.50136 * 145.02178 * 14 13 12 45 45 H 1.09004 * 117.49810 * 214.98703 * 15 13 12 46 46 H 1.08994 * 117.49951 * 359.97438 * 15 13 12 47 47 H 1.09001 * 109.47120 * 46.80164 * 16 4 2 48 48 H 1.08996 * 109.47256 * 166.80360 * 16 4 2 49 49 H 0.96994 * 120.00119 * 0.02562 * 19 17 16 50 50 H 0.97000 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.1005 0.2269 2.3421 6 6 0.6979 0.4658 2.9047 7 6 0.7976 1.2875 4.1915 8 7 -0.5454 1.5157 4.7305 9 6 -0.7041 2.2217 5.8675 10 8 0.2674 2.6689 6.4464 11 6 -2.0165 2.4397 6.3975 12 6 -3.0925 2.6193 6.8315 13 6 -4.4414 2.8440 7.3761 14 6 -4.6613 4.0986 8.2236 15 6 -4.6213 2.7215 8.8905 16 6 3.3177 -1.3317 0.9451 17 6 3.1178 -2.5465 0.0760 18 8 2.0070 -2.8358 -0.3158 19 7 4.1735 -3.3115 -0.2658 20 6 3.9915 -4.4170 -1.0560 21 1 3.0024 -4.6746 -1.4049 22 6 5.0799 -5.2055 -1.4089 23 7 6.2835 -4.8918 -0.9848 24 14 4.8320 -6.7121 -2.4850 25 1 4.9636 -6.3273 -3.9132 26 1 5.8572 -7.7331 -2.1509 27 1 3.4780 -7.2734 -2.2464 28 1 -0.3633 0.7083 0.7446 29 1 -0.3633 0.2907 -0.9856 30 1 -0.3633 -0.9989 0.2411 31 1 1.8933 -0.5138 -0.8900 32 1 3.1123 1.4487 0.1956 33 1 1.8452 1.8968 -0.9715 34 1 1.5259 2.0096 0.7759 35 1 2.5275 1.1753 2.0158 36 1 2.7328 -0.2092 3.1155 37 1 0.2253 -0.4923 3.1212 38 1 0.1003 1.0086 2.1724 39 1 1.2703 2.2455 3.9751 40 1 1.3953 0.7447 4.9238 41 1 -1.3202 1.1587 4.2690 42 1 -5.2650 2.5134 6.7430 43 1 -3.8071 4.7580 8.3775 44 1 -5.6296 4.5935 8.1484 45 1 -5.5634 2.3107 9.2539 46 1 -3.7409 2.4741 9.4835 47 1 3.9767 -0.6267 0.4382 48 1 3.7665 -1.6321 1.8919 49 1 5.0617 -3.0805 0.0478 50 1 7.0433 -5.4420 -1.2315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267257325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:28 Heat of formation + Delta-G solvation = 13.376322 kcal Electronic energy + Delta-G solvation = -27577.950566 eV Core-core repulsion = 23607.909967 eV Total energy + Delta-G solvation = -3970.040599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.96503 -39.14615 -38.10831 -37.41581 -35.48787 -33.84420 -33.25554 -32.02756 -31.47460 -30.98377 -27.44328 -27.04817 -25.73552 -24.47851 -23.63004 -23.01170 -22.11441 -21.72642 -19.81826 -18.97306 -18.86746 -17.80691 -17.14881 -16.53396 -16.42996 -15.84155 -15.60103 -15.53079 -15.14245 -14.57906 -14.43203 -14.30982 -13.80288 -13.65011 -13.40960 -13.14737 -13.11040 -12.55711 -12.44943 -12.36686 -12.13783 -12.03482 -12.02671 -11.89132 -11.71904 -11.59948 -11.45787 -11.08719 -11.04985 -10.80913 -10.79038 -10.61754 -10.44975 -10.37818 -10.22453 -10.18794 -10.15126 -9.45201 -9.39608 -8.41833 -7.92480 -7.81834 -6.38529 -3.79065 1.13980 1.87994 2.70294 2.91742 3.19366 3.27782 3.33608 3.56504 3.72403 3.93530 3.99901 4.18450 4.25211 4.36210 4.42518 4.78855 4.85789 5.01822 5.03427 5.06876 5.09421 5.23500 5.24598 5.26704 5.29662 5.42865 5.46003 5.47873 5.48778 5.56335 5.65601 5.74250 5.79214 5.90829 5.93802 5.99840 6.03612 6.10091 6.13614 6.22920 6.33898 6.51921 6.67701 6.81606 7.10648 7.35161 7.45993 7.57949 7.79982 8.10087 8.66113 9.21982 9.59071 10.11351 10.79366 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.001608 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.787578 B =17410.243083 C =17620.335941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 C -0.181 4.181 4 N -0.509 5.509 5 C 0.048 3.952 6 C -0.133 4.133 7 C 0.119 3.881 8 N -0.714 5.714 9 C 0.633 3.367 10 O -0.525 6.525 11 C -0.218 4.218 12 C -0.053 4.053 13 C -0.068 4.068 14 C -0.160 4.160 15 C -0.159 4.159 16 C 0.045 3.955 17 C 0.445 3.555 18 O -0.575 6.575 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.406 0.594 42 H 0.137 0.863 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.058 17.486 13.833 28.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 C -0.240 4.240 4 N -0.232 5.232 5 C -0.081 4.081 6 C -0.171 4.171 7 C -0.004 4.004 8 N -0.365 5.365 9 C 0.419 3.581 10 O -0.402 6.402 11 C -0.221 4.221 12 C -0.055 4.055 13 C -0.086 4.086 14 C -0.196 4.196 15 C -0.196 4.196 16 C -0.087 4.087 17 C 0.230 3.770 18 O -0.458 6.458 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.195 1.195 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.240 0.760 42 H 0.155 0.845 43 H 0.120 0.880 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.120 0.880 47 H 0.067 0.933 48 H 0.105 0.895 49 H 0.224 0.776 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.215 17.111 14.040 28.041 hybrid contribution 0.854 -0.251 -0.837 1.222 sum -16.361 16.860 13.203 26.949 Atomic orbital electron populations 1.21943 0.94655 1.02599 1.00259 1.21658 0.96102 0.91248 0.93635 1.22503 1.00978 0.98650 1.01866 1.61703 1.26360 1.30592 1.04543 1.22152 0.96066 0.96135 0.93703 1.22037 0.99016 1.00909 0.95168 1.21466 0.82636 1.00553 0.95759 1.45844 1.10644 1.54722 1.25271 1.14631 0.84277 0.78587 0.80569 1.90871 1.39585 1.50273 1.59504 1.20638 0.93498 1.05166 1.02774 1.21359 0.92746 0.95040 0.96357 1.18957 0.89618 1.05505 0.94482 1.23132 1.04222 0.90705 1.01589 1.23132 1.04367 0.99952 0.92129 1.21902 0.90274 0.96048 1.00434 1.19782 0.85676 0.85984 0.85552 1.90513 1.24128 1.73096 1.58086 1.41871 1.08515 1.24403 1.45697 1.19681 0.95830 1.01742 1.25424 0.87995 1.25238 0.94706 0.99554 0.98471 1.69615 0.98853 1.40132 1.45869 0.85879 0.78149 0.80668 0.79713 1.20499 1.20975 1.19466 0.93145 0.93306 0.91078 0.89542 0.92825 0.92408 0.92315 0.93197 0.90970 0.90007 0.90280 0.91148 0.90888 0.75964 0.84533 0.88007 0.87266 0.87236 0.87995 0.93346 0.89542 0.77584 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.82 37.16 0.33 -1.51 16 2 C 0.08 1.22 2.24 -67.71 -0.15 1.06 16 3 C -0.18 -2.14 7.76 37.16 0.29 -1.85 16 4 N -0.51 -7.85 3.95 -228.08 -0.90 -8.75 16 5 C 0.05 0.56 4.50 -3.83 -0.02 0.54 16 6 C -0.13 -1.31 4.72 -26.73 -0.13 -1.44 16 7 C 0.12 1.14 5.67 -4.04 -0.02 1.12 16 8 N -0.71 -6.69 5.55 -62.77 -0.35 -7.04 16 9 C 0.63 7.60 7.65 -14.33 -0.11 7.49 16 10 O -0.52 -8.20 17.09 5.27 0.09 -8.11 16 11 C -0.22 -2.33 13.61 -38.83 -0.53 -2.86 16 12 C -0.05 -0.47 13.47 -37.12 -0.50 -0.97 16 13 C -0.07 -0.37 6.21 -93.41 -0.58 -0.95 16 14 C -0.16 -0.68 10.21 -26.70 -0.27 -0.95 16 15 C -0.16 -0.69 10.21 -26.69 -0.27 -0.96 16 16 C 0.04 0.78 5.37 -4.98 -0.03 0.75 16 17 C 0.44 10.33 7.29 -10.98 -0.08 10.25 16 18 O -0.57 -15.19 14.85 5.55 0.08 -15.11 16 19 N -0.57 -14.29 5.29 -10.96 -0.06 -14.35 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.05 0.55 5.00 -51.93 -0.26 0.29 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.59 6.65 -51.93 -0.35 1.25 16 32 H 0.05 0.64 7.13 -51.93 -0.37 0.27 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.60 6.17 -51.93 -0.32 0.28 16 35 H 0.05 0.54 5.14 -51.92 -0.27 0.27 16 36 H 0.07 0.82 7.60 -51.93 -0.39 0.42 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.74 4.59 -51.93 -0.24 0.50 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.41 2.90 8.44 -40.82 -0.34 2.56 16 42 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.78 7.51 -51.93 -0.39 0.38 16 48 H 0.09 1.36 7.64 -51.93 -0.40 0.97 16 49 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 412.35 15.07 6.21 6.21 Total: -1.00 -33.65 412.35 -9.34 -43.00 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.81 Total: 10.15 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.31 Total: 1.80 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.58 Total: -54.03 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.65 -9.34 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267257325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.374 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds