Wall clock time and date at job start Tue Mar 31 2020 19:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47518 * 2 1 4 4 N 1.46902 * 109.47369 * 120.00369 * 2 1 3 5 5 C 1.46892 * 110.99989 * 274.20068 * 4 2 1 6 6 C 1.52999 * 109.47606 * 76.96790 * 5 4 2 7 7 C 1.53000 * 109.47613 * 173.34073 * 6 5 4 8 8 N 1.46496 * 109.47024 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99609 * 180.02562 * 8 7 6 10 10 O 1.21612 * 120.00745 * 359.97438 * 9 8 7 11 11 C 1.43204 * 119.99670 * 180.27338 * 9 8 7 12 12 C 8.65435 * 57.71581 * 69.02237 * 2 1 3 13 13 C 9.90719 * 52.93391 * 68.91503 * 2 1 3 14 14 C 1.52997 * 117.50263 * 332.29706 * 13 12 11 15 15 C 1.53002 * 117.49766 * 263.63849 * 13 12 11 16 16 C 1.46899 * 110.99927 * 150.24642 * 4 2 1 17 17 C 1.50701 * 109.47029 * 286.80434 * 16 4 2 18 18 O 1.21289 * 120.00148 * 1.38464 * 17 16 4 19 19 N 1.34780 * 119.99760 * 181.38676 * 17 16 4 20 20 C 1.37096 * 119.99590 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00514 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99744 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00026 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00278 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46752 * 89.99906 * 24 22 20 26 26 H 1.48494 * 109.47191 * 210.00091 * 24 22 20 27 27 H 1.48502 * 109.46819 * 330.00658 * 24 22 20 28 28 H 1.09003 * 109.46634 * 313.57009 * 1 2 3 29 29 H 1.08991 * 109.47318 * 73.56737 * 1 2 3 30 30 H 1.08996 * 109.47126 * 193.56936 * 1 2 3 31 31 H 1.09003 * 109.47169 * 240.00312 * 2 1 3 32 32 H 1.08996 * 109.47299 * 169.02753 * 3 2 1 33 33 H 1.09004 * 109.47040 * 289.03337 * 3 2 1 34 34 H 1.09002 * 109.46631 * 49.02726 * 3 2 1 35 35 H 1.09010 * 109.47182 * 316.96891 * 5 4 2 36 36 H 1.09003 * 109.47666 * 196.97413 * 5 4 2 37 37 H 1.09004 * 109.46617 * 53.34315 * 6 5 4 38 38 H 1.08999 * 109.47073 * 293.34761 * 6 5 4 39 39 H 1.08993 * 109.46860 * 59.99992 * 7 6 5 40 40 H 1.08996 * 109.46746 * 300.00342 * 7 6 5 41 41 H 0.96997 * 120.00132 * 0.02562 * 8 7 6 42 42 H 1.09006 * 115.54509 * 117.97467 * 13 12 11 43 43 H 1.09000 * 117.49549 * 0.02562 * 14 13 12 44 44 H 1.08999 * 117.50136 * 145.02178 * 14 13 12 45 45 H 1.09004 * 117.49810 * 214.98703 * 15 13 12 46 46 H 1.08994 * 117.49951 * 359.97438 * 15 13 12 47 47 H 1.09001 * 109.47120 * 46.80164 * 16 4 2 48 48 H 1.08996 * 109.47256 * 166.80360 * 16 4 2 49 49 H 0.96994 * 120.00119 * 0.02562 * 19 17 16 50 50 H 0.97000 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.1005 0.2269 2.3421 6 6 0.6979 0.4658 2.9047 7 6 0.7976 1.2875 4.1915 8 7 -0.5454 1.5157 4.7305 9 6 -0.7041 2.2217 5.8675 10 8 0.2674 2.6689 6.4464 11 6 -2.0165 2.4397 6.3975 12 6 -3.0925 2.6193 6.8315 13 6 -4.4414 2.8440 7.3761 14 6 -4.6613 4.0986 8.2236 15 6 -4.6213 2.7215 8.8905 16 6 3.3177 -1.3317 0.9451 17 6 3.1178 -2.5465 0.0760 18 8 2.0070 -2.8358 -0.3158 19 7 4.1735 -3.3115 -0.2658 20 6 3.9915 -4.4170 -1.0560 21 1 3.0024 -4.6746 -1.4049 22 6 5.0799 -5.2055 -1.4089 23 7 6.2835 -4.8918 -0.9848 24 14 4.8320 -6.7121 -2.4850 25 1 4.9636 -6.3273 -3.9132 26 1 5.8572 -7.7331 -2.1509 27 1 3.4780 -7.2734 -2.2464 28 1 -0.3633 0.7083 0.7446 29 1 -0.3633 0.2907 -0.9856 30 1 -0.3633 -0.9989 0.2411 31 1 1.8933 -0.5138 -0.8900 32 1 3.1123 1.4487 0.1956 33 1 1.8452 1.8968 -0.9715 34 1 1.5259 2.0096 0.7759 35 1 2.5275 1.1753 2.0158 36 1 2.7328 -0.2092 3.1155 37 1 0.2253 -0.4923 3.1212 38 1 0.1003 1.0086 2.1724 39 1 1.2703 2.2455 3.9751 40 1 1.3953 0.7447 4.9238 41 1 -1.3202 1.1587 4.2690 42 1 -5.2650 2.5134 6.7430 43 1 -3.8071 4.7580 8.3775 44 1 -5.6296 4.5935 8.1484 45 1 -5.5634 2.3107 9.2539 46 1 -3.7409 2.4741 9.4835 47 1 3.9767 -0.6267 0.4382 48 1 3.7665 -1.6321 1.8919 49 1 5.0617 -3.0805 0.0478 50 1 7.0433 -5.4420 -1.2315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267257325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:27 Heat of formation + Delta-G solvation = -9.949510 kcal Electronic energy + Delta-G solvation = -27578.962050 eV Core-core repulsion = 23607.909967 eV Total energy + Delta-G solvation = -3971.052083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.91452 -40.54169 -39.00834 -38.50700 -36.45044 -35.83949 -34.00605 -33.34572 -32.93648 -32.37070 -28.70008 -28.09589 -27.02468 -25.73616 -24.74647 -23.31681 -22.91067 -22.58053 -21.27431 -20.43657 -19.80794 -19.69145 -17.75840 -17.64354 -17.52760 -17.19421 -16.60847 -16.49847 -16.41633 -15.91231 -15.75258 -15.47355 -15.19025 -15.00921 -14.72045 -14.31248 -13.90230 -13.56066 -13.50063 -13.43080 -13.33255 -13.15437 -12.95009 -12.92348 -12.75226 -12.64324 -12.44532 -12.39636 -12.32489 -12.16030 -12.11975 -11.95114 -11.68673 -11.63258 -11.44154 -11.16127 -11.07094 -10.79557 -10.25538 -10.22340 -9.96399 -9.07300 -8.43927 -5.92114 0.35957 1.15846 1.38431 1.41576 1.54275 1.93265 2.11433 2.22845 2.29934 2.77565 3.06774 3.13361 3.23206 3.45909 3.81069 3.90435 3.92262 4.00665 4.01068 4.16327 4.20703 4.27576 4.36030 4.44375 4.46538 4.53222 4.56613 4.59128 4.69536 4.75454 4.77195 4.82870 4.90548 4.96000 5.01071 5.06050 5.07869 5.12530 5.19756 5.22057 5.29847 5.42929 5.50117 5.57851 5.96188 6.10548 6.18360 6.31255 6.36191 6.64881 6.96500 7.16801 7.61603 8.18029 8.73563 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.001608 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.787578 B =17410.243083 C =17620.335941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.079 3.921 3 C -0.173 4.173 4 N -0.526 5.526 5 C 0.046 3.954 6 C -0.119 4.119 7 C 0.125 3.875 8 N -0.700 5.700 9 C 0.633 3.367 10 O -0.571 6.571 11 C -0.266 4.266 12 C -0.026 4.026 13 C -0.086 4.086 14 C -0.153 4.153 15 C -0.154 4.154 16 C 0.057 3.943 17 C 0.443 3.557 18 O -0.611 6.611 19 N -0.579 5.579 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.274 1.274 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.417 0.583 42 H 0.162 0.838 43 H 0.090 0.910 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.106 0.894 49 H 0.394 0.606 50 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.449 18.706 14.545 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 C -0.231 4.231 4 N -0.250 5.250 5 C -0.081 4.081 6 C -0.157 4.157 7 C 0.002 3.998 8 N -0.351 5.351 9 C 0.421 3.579 10 O -0.452 6.452 11 C -0.269 4.269 12 C -0.029 4.029 13 C -0.104 4.104 14 C -0.190 4.190 15 C -0.191 4.191 16 C -0.074 4.074 17 C 0.230 3.770 18 O -0.496 6.496 19 N -0.217 5.217 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.564 5.564 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.199 1.199 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.254 0.746 42 H 0.179 0.821 43 H 0.108 0.892 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.124 0.876 49 H 0.228 0.772 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.616 18.337 14.741 30.001 hybrid contribution 1.178 -0.597 -1.020 1.669 sum -17.437 17.739 13.721 28.408 Atomic orbital electron populations 1.21890 0.93703 1.01650 1.01593 1.21617 0.96890 0.92629 0.91751 1.22409 1.01081 0.96453 1.03145 1.61659 1.25281 1.32253 1.05800 1.22255 0.97366 0.96106 0.92400 1.21866 0.97999 1.00535 0.95266 1.21384 0.82620 1.00546 0.95295 1.45748 1.11161 1.53653 1.24503 1.14800 0.84337 0.78114 0.80656 1.90834 1.41051 1.52423 1.60928 1.20584 0.93956 1.07564 1.04801 1.22145 0.93228 0.92894 0.94615 1.19357 0.88348 1.07093 0.95592 1.23243 1.05015 0.90364 1.00345 1.23242 1.05008 1.00033 0.90809 1.21744 0.91872 0.93794 1.00001 1.20859 0.84557 0.86774 0.84822 1.90482 1.25535 1.74299 1.59320 1.41946 1.09182 1.24471 1.46082 1.19638 0.95298 1.03678 1.27363 0.90430 1.25997 0.94214 1.01848 0.99247 1.69679 0.99316 1.41057 1.46315 0.84956 0.77990 0.77371 0.78185 1.19697 1.19640 1.19861 0.90188 0.92683 0.94044 0.93958 0.92769 0.91696 0.90119 0.91466 0.90419 0.90973 0.89359 0.90729 0.91582 0.74568 0.82075 0.89175 0.84811 0.84865 0.89229 0.91638 0.87595 0.77202 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.82 71.98 0.63 -2.77 16 2 C 0.08 2.32 2.24 44.91 0.10 2.42 16 3 C -0.17 -3.68 7.76 71.98 0.56 -3.12 16 4 N -0.53 -15.81 3.95 -875.52 -3.46 -19.27 16 5 C 0.05 0.99 4.50 86.30 0.39 1.38 16 6 C -0.12 -2.11 4.72 30.59 0.14 -1.96 16 7 C 0.13 2.22 5.67 86.38 0.49 2.71 16 8 N -0.70 -12.52 5.55 -470.76 -2.61 -15.13 16 9 C 0.63 15.28 7.65 85.49 0.65 15.94 16 10 O -0.57 -18.26 17.09 -4.07 -0.07 -18.33 16 11 C -0.27 -5.67 13.61 30.02 0.41 -5.26 16 12 C -0.03 -0.44 13.47 31.12 0.42 -0.02 16 13 C -0.09 -0.76 6.21 -12.60 -0.08 -0.83 16 14 C -0.15 -0.95 10.21 30.62 0.31 -0.64 16 15 C -0.15 -0.99 10.21 30.62 0.31 -0.68 16 16 C 0.06 1.96 5.37 85.56 0.46 2.41 16 17 C 0.44 21.08 7.29 87.66 0.64 21.72 16 18 O -0.61 -33.58 14.85 -3.06 -0.05 -33.62 16 19 N -0.58 -29.95 5.29 -306.98 -1.62 -31.57 16 20 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 24 Si 0.99 43.43 29.55 68.60 2.03 45.46 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 28 H 0.08 1.56 5.00 -2.39 -0.01 1.54 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.60 6.65 -2.39 -0.02 1.58 16 32 H 0.05 1.16 7.13 -2.39 -0.02 1.14 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.37 6.17 -2.39 -0.01 1.36 16 35 H 0.07 1.24 5.14 -2.38 -0.01 1.22 16 36 H 0.08 1.59 7.60 -2.39 -0.02 1.58 16 37 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.09 1.40 4.59 -2.39 -0.01 1.39 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.42 5.43 8.44 -92.71 -0.78 4.65 16 42 H 0.16 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.13 0.24 8.14 -2.38 -0.02 0.22 16 46 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 2.03 7.51 -2.39 -0.02 2.01 16 48 H 0.11 3.21 7.64 -2.39 -0.02 3.19 16 49 H 0.39 19.47 7.90 -92.71 -0.73 18.74 16 50 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -76.06 412.35 0.69 -75.37 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.54 Total: 34.21 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.72 Total: 12.91 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -7.41 Total: -116.00 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.11 Total: -51.95 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -76.06 0.69 -75.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267257325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.422 kcal (2) G-P(sol) polarization free energy of solvation -76.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds