Wall clock time and date at job start Tue Mar 31 2020 19:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35908 * 116.99724 * 2 1 4 4 C 1.39142 * 120.47801 * 0.24492 * 3 2 1 5 5 C 1.38539 * 118.37694 * 180.26260 * 4 3 2 6 6 C 1.38255 * 119.21865 * 359.75899 * 5 4 3 7 7 N 1.31849 * 120.88847 * 359.96941 * 6 5 4 8 8 C 1.31839 * 121.78136 * 0.03112 * 7 6 5 9 9 C 1.50696 * 119.65704 * 179.97438 * 8 7 6 10 10 C 1.50708 * 109.47133 * 90.00042 * 9 8 7 11 11 O 1.21280 * 119.99590 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99994 * 179.72476 * 10 9 8 13 13 C 1.46495 * 120.00050 * 180.27202 * 12 10 9 14 14 C 1.52996 * 109.47342 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47572 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47557 * 180.02562 * 15 14 13 17 17 C 1.36937 * 119.99877 * 270.00054 * 16 15 14 18 18 H 1.07995 * 120.00205 * 144.85856 * 17 16 15 19 19 C 1.38820 * 119.99703 * 324.85751 * 17 16 15 20 20 N 1.31621 * 119.99600 * 157.17178 * 19 17 16 21 21 Si 1.86800 * 119.99982 * 337.16606 * 19 17 16 22 22 H 1.48497 * 109.47128 * 95.35717 * 21 19 17 23 23 H 1.48503 * 109.46687 * 215.35549 * 21 19 17 24 24 H 1.48500 * 109.47214 * 335.35689 * 21 19 17 25 25 C 1.46497 * 119.99996 * 89.99734 * 16 15 14 26 26 C 1.52998 * 109.46936 * 121.90203 * 25 16 15 27 27 C 1.53001 * 109.47095 * 241.89972 * 25 16 15 28 28 H 1.08997 * 109.46913 * 60.00379 * 1 2 3 29 29 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47094 * 300.00328 * 1 2 3 31 31 H 1.07994 * 120.81135 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.38853 * 179.73217 * 5 4 3 33 33 H 1.08002 * 119.55478 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.47576 * 329.99322 * 9 8 7 35 35 H 1.09001 * 109.46976 * 209.99372 * 9 8 7 36 36 H 0.97008 * 119.99537 * 0.26847 * 12 10 9 37 37 H 1.08999 * 109.47006 * 300.00211 * 13 12 10 38 38 H 1.09004 * 109.46872 * 59.99937 * 13 12 10 39 39 H 1.09007 * 109.47006 * 300.00019 * 14 13 12 40 40 H 1.08997 * 109.47055 * 59.99782 * 14 13 12 41 41 H 1.09007 * 109.46839 * 299.99960 * 15 14 13 42 42 H 1.08997 * 109.47239 * 59.99735 * 15 14 13 43 43 H 0.97000 * 119.99859 * 179.97438 * 20 19 17 44 44 H 1.08993 * 109.47170 * 1.90006 * 25 16 15 45 45 H 1.09002 * 109.47080 * 65.32970 * 26 25 16 46 46 H 1.09002 * 109.47105 * 185.32687 * 26 25 16 47 47 H 1.09000 * 109.47361 * 305.32618 * 26 25 16 48 48 H 1.09008 * 109.46988 * 55.19130 * 27 25 16 49 49 H 1.09000 * 109.47013 * 175.18615 * 27 25 16 50 50 H 1.08994 * 109.47315 * 295.19274 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3842 0.0051 5 6 1.9716 3.5947 -0.0007 6 6 3.3541 3.5976 -0.0062 7 7 4.0334 2.4676 -0.0054 8 6 3.4306 1.2951 0.0000 9 6 4.2543 0.0332 0.0001 10 6 4.5344 -0.3838 1.4210 11 8 4.1076 0.2789 2.3427 12 7 5.2550 -1.4958 1.6673 13 6 5.5223 -1.9044 3.0485 14 6 6.3533 -3.1890 3.0487 15 6 6.6319 -3.6161 4.4912 16 7 7.4282 -4.8458 4.4913 17 6 6.8049 -6.0651 4.4928 18 1 7.2395 -6.8944 3.9546 19 6 5.6143 -6.2351 5.1861 20 7 4.7909 -7.2059 4.8516 21 14 5.1809 -5.0860 6.5937 22 1 4.3112 -3.9927 6.0903 23 1 4.4618 -5.8448 7.6484 24 1 6.4251 -4.5073 7.1612 25 6 8.8913 -4.7711 4.4898 26 6 9.4407 -5.5054 5.7144 27 6 9.4340 -5.4246 3.2173 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2184 2.3519 0.0096 32 1 1.4232 4.5252 -0.0013 33 1 3.8848 4.5382 -0.0112 34 1 5.1960 0.2139 -0.5180 35 1 3.7055 -0.7589 -0.5094 36 1 5.5965 -2.0256 0.9300 37 1 6.0725 -1.1152 3.5609 38 1 4.5784 -2.0826 3.5638 39 1 5.8026 -3.9780 2.5364 40 1 7.2971 -3.0112 2.5333 41 1 7.1824 -2.8272 5.0038 42 1 5.6880 -3.7940 5.0062 43 1 3.9591 -7.3249 5.3362 44 1 9.2018 -3.7268 4.5228 45 1 9.2112 -6.5680 5.6341 46 1 10.5210 -5.3699 5.7649 47 1 8.9813 -5.1016 6.6166 48 1 8.9766 -4.9570 2.3452 49 1 10.5153 -5.2937 3.1744 50 1 9.1967 -6.4883 3.2255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267313862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:16 Heat of formation + Delta-G solvation = -20.908639 kcal Electronic energy + Delta-G solvation = -28847.078445 eV Core-core repulsion = 24875.551138 eV Total energy + Delta-G solvation = -3971.527306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.05136 -39.30636 -38.34434 -37.08646 -35.02489 -33.37060 -32.52847 -31.85593 -31.53940 -29.53514 -28.27584 -27.68305 -26.30442 -25.18368 -23.45264 -23.13433 -22.56019 -21.22655 -20.23299 -19.40549 -18.37445 -17.40562 -17.03385 -16.70874 -16.36228 -15.99769 -15.64176 -15.37414 -15.07836 -14.70000 -14.65167 -14.16650 -13.99179 -13.91760 -13.44603 -13.33732 -13.13280 -13.01416 -12.55877 -12.39121 -12.22709 -11.98224 -11.81651 -11.77860 -11.73283 -11.65546 -11.37991 -11.09438 -10.78202 -10.68689 -10.41969 -10.37662 -10.07008 -9.91416 -9.81345 -9.72685 -9.59969 -9.35052 -8.83129 -8.57052 -8.45624 -6.83468 -5.96260 -3.34568 0.85083 1.03744 2.81246 2.90140 3.23340 3.34749 3.50637 3.54840 3.68265 4.06930 4.33753 4.44395 4.55434 4.68785 4.81144 4.85873 4.88402 4.90937 5.02554 5.16705 5.18996 5.26595 5.34811 5.54966 5.55332 5.64891 5.74212 5.81201 5.82368 5.89225 6.06027 6.09304 6.17496 6.19863 6.29393 6.33216 6.37376 6.55889 6.65770 6.67631 6.72876 6.80082 6.91255 6.95322 7.10789 7.16787 7.68225 7.77272 8.08275 8.39456 8.41813 9.02972 9.76255 10.15899 11.19571 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.002443 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.607965 B =11457.742713 C =12325.064167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.093 3.907 4 C -0.166 4.166 5 C -0.135 4.135 6 C 0.062 3.938 7 N -0.439 5.439 8 C 0.128 3.872 9 C -0.087 4.087 10 C 0.520 3.480 11 O -0.540 6.540 12 N -0.725 5.725 13 C 0.119 3.881 14 C -0.145 4.145 15 C 0.142 3.858 16 N -0.602 5.602 17 C -0.258 4.258 18 H 0.081 0.919 19 C 0.034 3.966 20 N -0.902 5.902 21 Si 0.874 3.126 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.166 3.834 26 C -0.152 4.152 27 C -0.153 4.153 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.158 0.842 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.401 0.599 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.262 0.738 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.047 0.953 49 H 0.037 0.963 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 18.271 -13.198 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.155 4.155 6 C -0.095 4.095 7 N -0.148 5.148 8 C -0.012 4.012 9 C -0.128 4.128 10 C 0.305 3.695 11 O -0.417 6.417 12 N -0.376 5.376 13 C -0.005 4.005 14 C -0.185 4.185 15 C 0.015 3.985 16 N -0.324 5.324 17 C -0.386 4.386 18 H 0.098 0.902 19 C -0.166 4.166 20 N -0.544 5.544 21 Si 0.705 3.295 22 H -0.214 1.214 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.060 3.940 26 C -0.211 4.211 27 C -0.212 4.212 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.233 18.455 -12.464 22.669 hybrid contribution -1.575 0.481 0.544 1.735 sum -5.808 18.937 -11.921 23.118 Atomic orbital electron populations 1.23131 0.78036 1.04564 1.01237 1.86124 1.21628 1.25804 1.88124 1.19854 0.93097 0.85285 0.97249 1.21660 1.00737 0.92132 1.04707 1.21965 0.95766 0.98179 0.99564 1.22588 0.91440 0.96279 0.99208 1.67441 1.40028 0.97505 1.09809 1.19927 0.87750 0.93386 1.00129 1.20456 1.01690 0.94591 0.96048 1.20258 0.78008 0.80583 0.90628 1.90698 1.51153 1.53521 1.46321 1.46045 1.55096 1.26785 1.09712 1.21452 1.00181 0.97063 0.81780 1.22409 0.99078 0.95101 1.01929 1.21072 0.95888 0.88427 0.93068 1.44246 0.99852 1.02056 1.86222 1.18679 1.05079 0.88702 1.26147 0.90177 1.25398 0.97119 0.96235 0.97867 1.69871 1.10063 1.33929 1.40494 0.87005 0.78106 0.80187 0.84242 1.21425 1.23247 1.19460 1.20392 0.84137 0.96441 0.93066 1.22121 0.97713 1.02243 0.99016 1.22158 0.98060 1.02057 0.98897 0.92613 0.87695 0.92493 0.84316 0.84539 0.82449 0.86988 0.86867 0.76511 0.92024 0.91794 0.90520 0.92151 0.94174 0.92837 0.92845 0.93269 0.92096 0.94504 0.93495 0.93434 0.94406 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.83 101.05 0.99 1.18 16 2 O -0.31 -3.52 9.54 -19.45 -0.19 -3.70 16 3 C 0.09 1.13 6.67 -39.07 -0.26 0.87 16 4 C -0.17 -1.60 9.14 -39.13 -0.36 -1.96 16 5 C -0.13 -1.18 10.11 -39.46 -0.40 -1.58 16 6 C 0.06 0.64 11.18 -17.54 -0.20 0.44 16 7 N -0.44 -5.80 10.27 -9.35 -0.10 -5.89 16 8 C 0.13 1.70 5.29 -82.42 -0.44 1.26 16 9 C -0.09 -1.03 5.78 -29.03 -0.17 -1.20 16 10 C 0.52 8.00 7.82 -10.98 -0.09 7.91 16 11 O -0.54 -10.60 16.03 5.56 0.09 -10.51 16 12 N -0.72 -10.28 5.56 -60.30 -0.33 -10.62 16 13 C 0.12 1.99 5.67 -4.05 -0.02 1.96 16 14 C -0.14 -2.56 5.65 -26.73 -0.15 -2.71 16 15 C 0.14 2.97 4.49 -4.04 -0.02 2.95 16 16 N -0.60 -13.59 2.06 -165.67 -0.34 -13.94 16 17 C -0.26 -6.86 8.74 -15.06 -0.13 -6.99 16 18 H 0.08 2.31 7.17 -52.49 -0.38 1.94 16 19 C 0.03 0.95 5.31 -17.43 -0.09 0.86 16 20 N -0.90 -27.13 13.97 55.49 0.78 -26.35 16 21 Si 0.87 22.28 24.97 -169.99 -4.24 18.03 16 22 H -0.29 -7.17 6.66 56.52 0.38 -6.80 16 23 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.17 3.19 3.36 -67.93 -0.23 2.96 16 26 C -0.15 -2.85 9.04 37.16 0.34 -2.51 16 27 C -0.15 -2.67 9.11 37.16 0.34 -2.33 16 28 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.39 7.69 -51.93 -0.40 -0.01 16 31 H 0.14 0.95 6.45 -52.49 -0.34 0.61 16 32 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.11 1.12 7.51 -51.93 -0.39 0.73 16 36 H 0.40 4.51 8.47 -40.82 -0.35 4.16 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.77 7.90 -51.93 -0.41 0.36 16 42 H 0.05 1.26 2.98 -51.93 -0.15 1.10 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.05 0.86 7.78 -51.93 -0.40 0.46 16 45 H 0.06 1.23 7.80 -51.93 -0.40 0.82 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.06 1.09 7.25 -51.93 -0.38 0.71 16 LS Contribution 405.03 15.07 6.10 6.10 Total: -1.00 -34.99 405.03 -7.35 -42.34 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.23 Total: 3.42 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.88 Total: 1.12 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.00 Total: -56.80 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.10 Total: -14.22 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.24 Total: 18.03 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.99 -7.35 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267313862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.432 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds