Wall clock time and date at job start Tue Mar 31 2020 19:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35908 * 116.99724 * 2 1 4 4 C 1.39142 * 120.47801 * 0.24492 * 3 2 1 5 5 C 1.38539 * 118.37694 * 180.26260 * 4 3 2 6 6 C 1.38255 * 119.21865 * 359.75899 * 5 4 3 7 7 N 1.31849 * 120.88847 * 359.96941 * 6 5 4 8 8 C 1.31839 * 121.78136 * 0.03112 * 7 6 5 9 9 C 1.50696 * 119.65704 * 179.97438 * 8 7 6 10 10 C 1.50708 * 109.47133 * 90.00042 * 9 8 7 11 11 O 1.21280 * 119.99590 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99994 * 179.72476 * 10 9 8 13 13 C 1.46495 * 120.00050 * 180.27202 * 12 10 9 14 14 C 1.52996 * 109.47342 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47572 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47557 * 180.02562 * 15 14 13 17 17 C 1.36937 * 119.99877 * 270.00054 * 16 15 14 18 18 H 1.07995 * 120.00205 * 144.85856 * 17 16 15 19 19 C 1.38820 * 119.99703 * 324.85751 * 17 16 15 20 20 N 1.31621 * 119.99600 * 157.17178 * 19 17 16 21 21 Si 1.86800 * 119.99982 * 337.16606 * 19 17 16 22 22 H 1.48497 * 109.47128 * 95.35717 * 21 19 17 23 23 H 1.48503 * 109.46687 * 215.35549 * 21 19 17 24 24 H 1.48500 * 109.47214 * 335.35689 * 21 19 17 25 25 C 1.46497 * 119.99996 * 89.99734 * 16 15 14 26 26 C 1.52998 * 109.46936 * 121.90203 * 25 16 15 27 27 C 1.53001 * 109.47095 * 241.89972 * 25 16 15 28 28 H 1.08997 * 109.46913 * 60.00379 * 1 2 3 29 29 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47094 * 300.00328 * 1 2 3 31 31 H 1.07994 * 120.81135 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.38853 * 179.73217 * 5 4 3 33 33 H 1.08002 * 119.55478 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.47576 * 329.99322 * 9 8 7 35 35 H 1.09001 * 109.46976 * 209.99372 * 9 8 7 36 36 H 0.97008 * 119.99537 * 0.26847 * 12 10 9 37 37 H 1.08999 * 109.47006 * 300.00211 * 13 12 10 38 38 H 1.09004 * 109.46872 * 59.99937 * 13 12 10 39 39 H 1.09007 * 109.47006 * 300.00019 * 14 13 12 40 40 H 1.08997 * 109.47055 * 59.99782 * 14 13 12 41 41 H 1.09007 * 109.46839 * 299.99960 * 15 14 13 42 42 H 1.08997 * 109.47239 * 59.99735 * 15 14 13 43 43 H 0.97000 * 119.99859 * 179.97438 * 20 19 17 44 44 H 1.08993 * 109.47170 * 1.90006 * 25 16 15 45 45 H 1.09002 * 109.47080 * 65.32970 * 26 25 16 46 46 H 1.09002 * 109.47105 * 185.32687 * 26 25 16 47 47 H 1.09000 * 109.47361 * 305.32618 * 26 25 16 48 48 H 1.09008 * 109.46988 * 55.19130 * 27 25 16 49 49 H 1.09000 * 109.47013 * 175.18615 * 27 25 16 50 50 H 1.08994 * 109.47315 * 295.19274 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2979 2.3842 0.0051 5 6 1.9716 3.5947 -0.0007 6 6 3.3541 3.5976 -0.0062 7 7 4.0334 2.4676 -0.0054 8 6 3.4306 1.2951 0.0000 9 6 4.2543 0.0332 0.0001 10 6 4.5344 -0.3838 1.4210 11 8 4.1076 0.2789 2.3427 12 7 5.2550 -1.4958 1.6673 13 6 5.5223 -1.9044 3.0485 14 6 6.3533 -3.1890 3.0487 15 6 6.6319 -3.6161 4.4912 16 7 7.4282 -4.8458 4.4913 17 6 6.8049 -6.0651 4.4928 18 1 7.2395 -6.8944 3.9546 19 6 5.6143 -6.2351 5.1861 20 7 4.7909 -7.2059 4.8516 21 14 5.1809 -5.0860 6.5937 22 1 4.3112 -3.9927 6.0903 23 1 4.4618 -5.8448 7.6484 24 1 6.4251 -4.5073 7.1612 25 6 8.8913 -4.7711 4.4898 26 6 9.4407 -5.5054 5.7144 27 6 9.4340 -5.4246 3.2173 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2184 2.3519 0.0096 32 1 1.4232 4.5252 -0.0013 33 1 3.8848 4.5382 -0.0112 34 1 5.1960 0.2139 -0.5180 35 1 3.7055 -0.7589 -0.5094 36 1 5.5965 -2.0256 0.9300 37 1 6.0725 -1.1152 3.5609 38 1 4.5784 -2.0826 3.5638 39 1 5.8026 -3.9780 2.5364 40 1 7.2971 -3.0112 2.5333 41 1 7.1824 -2.8272 5.0038 42 1 5.6880 -3.7940 5.0062 43 1 3.9591 -7.3249 5.3362 44 1 9.2018 -3.7268 4.5228 45 1 9.2112 -6.5680 5.6341 46 1 10.5210 -5.3699 5.7649 47 1 8.9813 -5.1016 6.6166 48 1 8.9766 -4.9570 2.3452 49 1 10.5153 -5.2937 3.1744 50 1 9.1967 -6.4883 3.2255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267313862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:15 Heat of formation + Delta-G solvation = -45.541321 kcal Electronic energy + Delta-G solvation = -28848.146598 eV Core-core repulsion = 24875.551138 eV Total energy + Delta-G solvation = -3972.595459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85293 -40.49557 -39.10255 -38.77510 -36.40114 -34.33550 -34.21021 -33.45565 -32.44108 -31.05588 -29.29277 -28.33875 -27.76716 -26.87511 -25.07530 -23.86470 -23.56337 -22.68703 -21.42377 -21.15727 -19.10082 -18.42417 -18.19185 -18.12625 -17.48133 -17.30225 -16.76074 -16.69005 -16.53095 -16.19306 -15.56057 -15.30416 -15.01207 -14.93856 -14.82169 -14.73026 -14.32221 -14.13387 -14.02453 -13.99727 -13.53501 -13.38037 -13.16788 -12.96251 -12.88322 -12.63061 -12.57563 -12.38325 -12.34905 -12.33391 -12.15540 -11.99755 -11.68449 -11.39905 -11.19403 -11.09204 -10.65317 -10.59221 -10.54570 -10.11743 -9.35513 -8.74023 -8.14530 -5.47065 0.08423 0.28250 1.29931 1.40560 1.49464 1.62885 2.14353 2.23212 2.44337 2.82254 3.09192 3.28142 3.35829 3.61951 3.80831 3.89274 4.05454 4.06620 4.17002 4.26130 4.30896 4.31080 4.32863 4.40601 4.46190 4.46963 4.53226 4.59538 4.66979 4.71833 4.75252 4.76885 4.86687 4.97630 5.03397 5.09869 5.10349 5.16921 5.21406 5.26417 5.37458 5.46213 5.49565 5.59221 5.66298 6.01875 6.20427 6.26965 6.55265 6.98807 7.06138 7.23759 7.72952 8.13144 9.05672 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.002443 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.607965 B =11457.742713 C =12325.064167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.075 3.925 4 C -0.170 4.170 5 C -0.126 4.126 6 C 0.047 3.953 7 N -0.467 5.467 8 C 0.094 3.906 9 C -0.078 4.078 10 C 0.518 3.482 11 O -0.586 6.586 12 N -0.715 5.715 13 C 0.129 3.871 14 C -0.125 4.125 15 C 0.133 3.867 16 N -0.612 5.612 17 C -0.227 4.227 18 H 0.050 0.950 19 C -0.022 4.022 20 N -0.951 5.951 21 Si 0.929 3.071 22 H -0.284 1.284 23 H -0.317 1.317 24 H -0.259 1.259 25 C 0.156 3.844 26 C -0.148 4.148 27 C -0.144 4.144 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.059 0.941 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.417 0.583 37 H 0.066 0.934 38 H 0.037 0.963 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.258 0.742 44 H 0.078 0.922 45 H 0.035 0.965 46 H 0.074 0.926 47 H 0.032 0.968 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 21.022 -14.208 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.027 3.973 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.111 4.111 7 N -0.177 5.177 8 C -0.046 4.046 9 C -0.118 4.118 10 C 0.306 3.694 11 O -0.466 6.466 12 N -0.367 5.367 13 C 0.004 3.996 14 C -0.165 4.165 15 C 0.007 3.993 16 N -0.335 5.335 17 C -0.357 4.357 18 H 0.068 0.932 19 C -0.217 4.217 20 N -0.596 5.596 21 Si 0.760 3.240 22 H -0.212 1.212 23 H -0.246 1.246 24 H -0.183 1.183 25 C 0.051 3.949 26 C -0.206 4.206 27 C -0.203 4.203 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.183 0.817 32 H 0.192 0.808 33 H 0.200 0.800 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.051 0.949 48 H 0.067 0.933 49 H 0.090 0.910 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.293 21.216 -13.505 25.364 hybrid contribution -1.802 -0.311 0.791 1.992 sum -5.095 20.905 -12.714 24.992 Atomic orbital electron populations 1.23387 0.76249 1.05704 1.02427 1.86076 1.23615 1.26064 1.88258 1.20058 0.93233 0.86240 0.97768 1.22074 1.02155 0.91685 1.03698 1.22395 0.95385 0.99395 0.97389 1.23159 0.92646 0.96478 0.98774 1.67409 1.41192 0.98274 1.10811 1.20118 0.88665 0.93749 1.02023 1.20446 1.02908 0.94972 0.93516 1.20897 0.76905 0.79916 0.91728 1.90667 1.52956 1.54996 1.48020 1.45909 1.54820 1.26770 1.09242 1.21172 0.98697 0.96635 0.83058 1.22119 0.99998 0.94630 0.99743 1.21164 0.94816 0.88347 0.94946 1.44410 1.01619 1.01109 1.86322 1.18533 1.04088 0.89503 1.23558 0.93220 1.25881 0.97777 0.97898 1.00140 1.69982 1.10895 1.36616 1.42123 0.86097 0.78042 0.78415 0.81432 1.21241 1.24631 1.18318 1.20706 0.81798 0.98460 0.93956 1.22073 1.00099 1.00340 0.98123 1.22048 1.00237 1.00054 0.97946 0.90408 0.86727 0.92213 0.81661 0.80831 0.80018 0.84975 0.85313 0.74655 0.91599 0.94431 0.92775 0.89691 0.91670 0.95560 0.93284 0.90350 0.94591 0.90758 0.94852 0.93323 0.90963 0.95114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.83 113.37 1.11 1.34 16 2 O -0.33 -7.39 9.54 -92.51 -0.88 -8.27 16 3 C 0.08 1.76 6.67 22.60 0.15 1.91 16 4 C -0.17 -2.95 9.14 22.56 0.21 -2.74 16 5 C -0.13 -1.89 10.11 22.35 0.23 -1.66 16 6 C 0.05 0.89 11.18 84.69 0.95 1.83 16 7 N -0.47 -12.02 10.27 -183.50 -1.88 -13.90 16 8 C 0.09 2.44 5.29 42.67 0.23 2.66 16 9 C -0.08 -1.80 5.78 29.10 0.17 -1.63 16 10 C 0.52 15.76 7.82 87.66 0.69 16.45 16 11 O -0.59 -23.27 16.03 -3.03 -0.05 -23.32 16 12 N -0.72 -19.62 5.56 -463.07 -2.57 -22.19 16 13 C 0.13 4.21 5.67 86.38 0.49 4.70 16 14 C -0.12 -4.24 5.65 30.59 0.17 -4.07 16 15 C 0.13 5.37 4.49 86.38 0.39 5.76 16 16 N -0.61 -26.95 2.06 -678.05 -1.40 -28.35 16 17 C -0.23 -12.25 8.74 84.04 0.73 -11.52 16 18 H 0.05 2.97 7.17 -2.91 -0.02 2.95 16 19 C -0.02 -1.24 5.31 84.86 0.45 -0.79 16 20 N -0.95 -59.31 13.97 21.65 0.30 -59.01 16 21 Si 0.93 47.15 24.97 68.60 1.71 48.86 16 22 H -0.28 -14.17 6.66 99.48 0.66 -13.51 16 23 H -0.32 -16.57 7.11 99.48 0.71 -15.86 16 24 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 25 C 0.16 5.57 3.36 44.99 0.15 5.72 16 26 C -0.15 -5.21 9.04 71.98 0.65 -4.56 16 27 C -0.14 -4.68 9.11 71.98 0.66 -4.02 16 28 H 0.08 0.68 7.71 -2.39 -0.02 0.66 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 0.75 7.69 -2.39 -0.02 0.74 16 31 H 0.17 1.80 6.45 -2.91 -0.02 1.78 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 34 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.13 2.46 7.51 -2.39 -0.02 2.45 16 36 H 0.42 8.72 8.47 -92.70 -0.79 7.94 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.07 2.31 7.90 -2.38 -0.02 2.29 16 42 H 0.03 1.23 2.98 -2.39 -0.01 1.22 16 43 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.08 2.40 7.78 -2.39 -0.02 2.38 16 45 H 0.03 1.42 7.80 -2.39 -0.02 1.40 16 46 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 49 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.03 1.14 7.25 -2.39 -0.02 1.12 16 Total: -1.00 -79.32 405.03 2.75 -76.58 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.10 Total: 20.21 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 7.42 Total: 9.39 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -5.55 Total: -123.44 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.93 Total: -31.59 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.71 Total: 48.86 kcal Total: -79.32 2.75 -76.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267313862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.034 kcal (2) G-P(sol) polarization free energy of solvation -79.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds