Wall clock time and date at job start Tue Mar 31 2020 19:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 N 1.46502 * 109.47021 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99785 * 264.11345 * 4 3 2 6 6 H 1.07998 * 119.99670 * 188.01587 * 5 4 3 7 7 C 1.38809 * 120.00160 * 8.01743 * 5 4 3 8 8 N 1.31612 * 120.00263 * 25.64272 * 7 5 4 9 9 Si 1.86806 * 119.99834 * 205.64920 * 7 5 4 10 10 H 1.48494 * 109.47300 * 84.98183 * 9 7 5 11 11 H 1.48497 * 109.46810 * 204.98425 * 9 7 5 12 12 H 1.48496 * 109.46975 * 324.98236 * 9 7 5 13 13 C 1.46504 * 119.99950 * 84.11314 * 4 3 2 14 14 C 1.53003 * 109.47025 * 269.99774 * 13 4 3 15 15 N 1.46498 * 109.46722 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99724 * 180.02562 * 15 14 13 17 17 O 1.21494 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.48326 * 120.00071 * 180.02562 * 16 15 14 19 19 N 1.31342 * 127.13000 * 0.02562 * 18 16 15 20 20 O 1.21249 * 111.48526 * 179.91509 * 19 18 16 21 21 C 1.33639 * 111.64077 * 359.61807 * 20 19 18 22 22 C 1.34986 * 106.59736 * 0.68233 * 21 20 19 23 23 C 1.50084 * 126.59855 * 179.22364 * 22 21 20 24 24 C 1.53336 * 109.03452 * 27.93493 * 23 22 21 25 25 C 1.52540 * 109.60697 * 271.60980 * 24 23 22 26 26 C 1.52626 * 110.98633 * 61.27715 * 25 24 23 27 27 C 1.50613 * 127.99871 * 181.61813 * 21 20 19 28 28 H 1.08996 * 109.47455 * 60.00380 * 1 2 3 29 29 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46956 * 299.99650 * 1 2 3 31 31 H 1.08998 * 109.47049 * 239.99901 * 2 1 3 32 32 H 1.08996 * 109.47455 * 119.99620 * 2 1 3 33 33 H 1.08998 * 109.47377 * 60.00102 * 3 2 1 34 34 H 1.09002 * 109.47259 * 299.99553 * 3 2 1 35 35 H 0.96998 * 120.00350 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.46960 * 150.00079 * 13 4 3 37 37 H 1.09000 * 109.47049 * 29.99996 * 13 4 3 38 38 H 1.09006 * 109.46485 * 60.00235 * 14 13 4 39 39 H 1.08997 * 109.46929 * 300.00217 * 14 13 4 40 40 H 0.96995 * 120.00144 * 0.02562 * 15 14 13 41 41 H 1.09008 * 109.55892 * 147.82390 * 23 22 21 42 42 H 1.08997 * 109.56014 * 268.04340 * 23 22 21 43 43 H 1.08995 * 109.46333 * 31.53848 * 24 23 22 44 44 H 1.09000 * 109.46339 * 151.50246 * 24 23 22 45 45 H 1.08996 * 109.09946 * 300.92006 * 25 24 23 46 46 H 1.08997 * 109.20208 * 181.70357 * 25 24 23 47 47 H 1.08997 * 109.39913 * 273.58717 * 26 25 24 48 48 H 1.08998 * 109.32981 * 153.79392 * 26 25 24 49 49 H 1.09005 * 109.52868 * 345.79771 * 27 21 20 50 50 H 1.08994 * 109.53908 * 105.95533 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.5640 1.1788 6 1 5.2621 1.6943 1.1695 7 6 3.5067 1.5197 2.3862 8 7 2.3566 0.8852 2.4686 9 14 4.2194 2.3610 3.8942 10 1 3.8326 3.7947 3.8905 11 1 3.6924 1.7092 5.1200 12 1 5.6999 2.2477 3.8708 13 6 4.2369 1.3126 -1.2630 14 6 4.4919 -0.1675 -1.5547 15 7 5.2233 -0.2974 -2.8174 16 6 5.5596 -1.5183 -3.2788 17 8 5.2557 -2.5111 -2.6478 18 6 6.3006 -1.6498 -4.5569 19 7 6.6975 -0.6784 -5.3469 20 8 7.2820 -1.1072 -6.3188 21 6 7.3591 -2.4412 -6.2988 22 6 6.7267 -2.8472 -5.1775 23 6 6.5343 -4.2642 -4.7219 24 6 7.6816 -5.1243 -5.2650 25 6 7.3137 -5.6550 -6.6470 26 6 7.0897 -4.5097 -7.6305 27 6 8.0298 -3.3463 -7.2985 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.8789 0.8545 3.3122 36 1 5.1894 1.8372 -1.1864 37 1 3.6475 1.7460 -2.0710 38 1 3.5394 -0.6920 -1.6313 39 1 5.0813 -0.6008 -0.7467 40 1 5.4655 0.4952 -3.3213 41 1 6.5351 -4.3006 -3.6324 42 1 5.5843 -4.6429 -5.0989 43 1 8.5853 -4.5194 -5.3393 44 1 7.8595 -5.9611 -4.5895 45 1 6.4007 -6.2456 -6.5708 46 1 8.1203 -6.2897 -7.0137 47 1 6.0560 -4.1708 -7.5623 48 1 7.2901 -4.8594 -8.6433 49 1 8.2508 -2.7856 -8.2068 50 1 8.9562 -3.7341 -6.8750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267318431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:59 Heat of formation + Delta-G solvation = 34.831767 kcal Electronic energy + Delta-G solvation = -29297.186867 eV Core-core repulsion = 25328.076646 eV Total energy + Delta-G solvation = -3969.110221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.22864 -39.38689 -38.45543 -36.59442 -34.48792 -34.20539 -32.20704 -31.95639 -31.68843 -31.14733 -28.11396 -26.55252 -25.51194 -25.16096 -24.68701 -22.92572 -21.36578 -20.82606 -20.20835 -20.07136 -19.68891 -17.99995 -17.75048 -16.90116 -16.61824 -15.72518 -15.53900 -15.18795 -15.04471 -14.86087 -14.22352 -13.89641 -13.79734 -13.68483 -13.62530 -13.43822 -12.92645 -12.82222 -12.64262 -12.39290 -12.29856 -12.08404 -11.60338 -11.54269 -11.33522 -11.26465 -11.06638 -10.95469 -10.86602 -10.75783 -10.62745 -10.41106 -10.34073 -10.08167 -9.97868 -9.90782 -9.70229 -9.28768 -9.23757 -8.69500 -8.35033 -6.94840 -5.78899 -3.10539 1.02686 1.55344 2.71588 3.14549 3.28176 3.39923 3.47750 3.48160 3.91321 4.29083 4.37666 4.45601 4.51104 4.56730 4.66875 4.78939 4.95191 4.99789 5.22470 5.30207 5.35539 5.37880 5.43660 5.52191 5.54721 5.59293 5.70146 5.80354 5.82273 5.86403 5.89088 5.96881 6.15400 6.18816 6.23148 6.28650 6.52479 6.59792 6.65100 6.68957 6.83148 6.99130 7.18916 7.27422 7.59633 7.66755 7.78701 7.91952 8.10343 8.28135 8.34055 9.21185 9.82612 10.27029 11.24479 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.002322 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.565368 B =12057.735302 C =12316.299574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.590 5.590 5 C -0.257 4.257 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.707 5.707 16 C 0.590 3.410 17 O -0.522 6.522 18 C -0.015 4.015 19 N -0.336 5.336 20 O 0.121 5.879 21 C -0.040 4.040 22 C -0.146 4.146 23 C -0.049 4.049 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.037 4.037 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.003 0.997 35 H 0.253 0.747 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.401 0.599 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.302 -10.017 -21.254 25.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.310 5.310 5 C -0.385 4.385 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.728 3.272 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.036 4.036 15 N -0.358 5.358 16 C 0.372 3.628 17 O -0.396 6.396 18 C -0.174 4.174 19 N -0.038 5.038 20 O 0.048 5.952 21 C -0.104 4.104 22 C -0.151 4.151 23 C -0.086 4.086 24 C -0.162 4.162 25 C -0.161 4.161 26 C -0.155 4.155 27 C -0.075 4.075 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.022 0.978 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.235 0.765 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.107 0.893 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.801 -9.367 -20.465 24.166 hybrid contribution 0.351 -0.010 0.744 0.823 sum 9.152 -9.377 -19.721 23.677 Atomic orbital electron populations 1.21626 0.98542 0.99328 1.00018 1.22226 0.92949 1.00478 1.01359 1.20943 0.81483 0.94548 0.98467 1.44252 1.01934 1.83511 1.01346 1.19271 0.92267 1.43535 0.83462 0.90756 1.24725 0.97580 1.00059 0.97294 1.70158 1.17197 1.41142 1.25005 0.86367 0.78421 0.79902 0.82553 1.21573 1.21951 1.20771 1.20961 0.96546 0.91495 0.89582 1.22878 0.95924 1.02126 0.82680 1.46117 1.57014 1.07202 1.25435 1.16925 0.79117 0.84482 0.82249 1.90787 1.54316 1.37135 1.57412 1.23389 1.04603 0.90394 0.99013 1.74409 1.10155 1.22707 0.96563 1.84747 1.55030 1.20806 1.34641 1.24086 1.03398 0.83686 0.99235 1.20684 1.02234 0.97298 0.94836 1.20019 0.98999 0.87016 1.02561 1.21727 0.98406 0.99646 0.96467 1.21539 1.02130 0.97559 0.94829 1.21589 0.99842 0.94367 0.99686 1.20253 0.98298 0.93082 0.95823 0.95080 0.94801 0.92966 0.96083 0.88318 0.89143 0.97833 0.93691 0.93074 0.93771 0.91197 0.91086 0.76489 0.88829 0.89987 0.91301 0.90944 0.91423 0.91665 0.91223 0.90442 0.89317 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.91 37.16 0.37 -2.31 16 2 C -0.13 -2.97 5.61 -26.73 -0.15 -3.12 16 3 C 0.17 4.03 4.92 -4.04 -0.02 4.01 16 4 N -0.59 -14.27 2.54 -173.23 -0.44 -14.71 16 5 C -0.26 -6.81 9.70 -15.06 -0.15 -6.96 16 6 H 0.07 1.96 7.94 -52.49 -0.42 1.54 16 7 C 0.00 0.04 4.89 -17.43 -0.09 -0.05 16 8 N -0.89 -24.36 8.62 55.49 0.48 -23.88 16 9 Si 0.90 21.43 29.62 -169.99 -5.04 16.39 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.14 2.85 5.82 -4.04 -0.02 2.82 16 14 C 0.09 1.75 5.88 -4.04 -0.02 1.72 16 15 N -0.71 -11.87 5.55 -61.09 -0.34 -12.21 16 16 C 0.59 10.31 7.85 -12.11 -0.10 10.22 16 17 O -0.52 -10.53 15.49 5.37 0.08 -10.45 16 18 C -0.02 -0.22 7.19 -82.71 -0.60 -0.82 16 19 N -0.34 -4.67 11.88 33.31 0.40 -4.27 16 20 O 0.12 1.42 11.19 18.13 0.20 1.62 16 21 C -0.04 -0.40 6.64 -35.51 -0.24 -0.64 16 22 C -0.15 -1.78 5.73 -104.86 -0.60 -2.38 16 23 C -0.05 -0.52 5.37 -28.01 -0.15 -0.67 16 24 C -0.13 -0.92 5.55 -26.79 -0.15 -1.07 16 25 C -0.12 -0.67 5.63 -27.16 -0.15 -0.83 16 26 C -0.12 -0.62 5.63 -26.81 -0.15 -0.77 16 27 C -0.04 -0.21 5.55 -27.81 -0.15 -0.37 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.02 0.46 5.97 -51.93 -0.31 0.15 16 32 H 0.10 2.60 6.33 -51.93 -0.33 2.27 16 33 H 0.09 2.37 5.85 -51.93 -0.30 2.07 16 34 H 0.00 0.08 7.98 -51.93 -0.41 -0.34 16 35 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.05 0.98 8.03 -51.93 -0.42 0.56 16 37 H 0.04 0.80 7.95 -51.93 -0.41 0.39 16 38 H 0.07 1.49 5.92 -51.93 -0.31 1.18 16 39 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.40 5.88 8.24 -40.82 -0.34 5.55 16 41 H 0.09 1.21 7.06 -51.92 -0.37 0.84 16 42 H 0.08 0.85 7.83 -51.93 -0.41 0.44 16 43 H 0.07 0.49 5.69 -51.93 -0.30 0.20 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 46 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 48 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.10 0.47 6.38 -51.93 -0.33 0.14 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -29.92 388.58 -9.15 -39.07 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.99 Total: 3.76 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.36 Total: -1.20 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.10 Total: -55.06 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.29 Total: -8.83 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.39 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.92 -9.15 -39.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267318431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.906 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds