Wall clock time and date at job start Tue Mar 31 2020 19:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 N 1.46502 * 109.47021 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99785 * 264.11345 * 4 3 2 6 6 H 1.07998 * 119.99670 * 188.01587 * 5 4 3 7 7 C 1.38809 * 120.00160 * 8.01743 * 5 4 3 8 8 N 1.31612 * 120.00263 * 25.64272 * 7 5 4 9 9 Si 1.86806 * 119.99834 * 205.64920 * 7 5 4 10 10 H 1.48494 * 109.47300 * 84.98183 * 9 7 5 11 11 H 1.48497 * 109.46810 * 204.98425 * 9 7 5 12 12 H 1.48496 * 109.46975 * 324.98236 * 9 7 5 13 13 C 1.46504 * 119.99950 * 84.11314 * 4 3 2 14 14 C 1.53003 * 109.47025 * 269.99774 * 13 4 3 15 15 N 1.46498 * 109.46722 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99724 * 180.02562 * 15 14 13 17 17 O 1.21494 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.48326 * 120.00071 * 180.02562 * 16 15 14 19 19 N 1.31342 * 127.13000 * 0.02562 * 18 16 15 20 20 O 1.21249 * 111.48526 * 179.91509 * 19 18 16 21 21 C 1.33639 * 111.64077 * 359.61807 * 20 19 18 22 22 C 1.34986 * 106.59736 * 0.68233 * 21 20 19 23 23 C 1.50084 * 126.59855 * 179.22364 * 22 21 20 24 24 C 1.53336 * 109.03452 * 27.93493 * 23 22 21 25 25 C 1.52540 * 109.60697 * 271.60980 * 24 23 22 26 26 C 1.52626 * 110.98633 * 61.27715 * 25 24 23 27 27 C 1.50613 * 127.99871 * 181.61813 * 21 20 19 28 28 H 1.08996 * 109.47455 * 60.00380 * 1 2 3 29 29 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46956 * 299.99650 * 1 2 3 31 31 H 1.08998 * 109.47049 * 239.99901 * 2 1 3 32 32 H 1.08996 * 109.47455 * 119.99620 * 2 1 3 33 33 H 1.08998 * 109.47377 * 60.00102 * 3 2 1 34 34 H 1.09002 * 109.47259 * 299.99553 * 3 2 1 35 35 H 0.96998 * 120.00350 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.46960 * 150.00079 * 13 4 3 37 37 H 1.09000 * 109.47049 * 29.99996 * 13 4 3 38 38 H 1.09006 * 109.46485 * 60.00235 * 14 13 4 39 39 H 1.08997 * 109.46929 * 300.00217 * 14 13 4 40 40 H 0.96995 * 120.00144 * 0.02562 * 15 14 13 41 41 H 1.09008 * 109.55892 * 147.82390 * 23 22 21 42 42 H 1.08997 * 109.56014 * 268.04340 * 23 22 21 43 43 H 1.08995 * 109.46333 * 31.53848 * 24 23 22 44 44 H 1.09000 * 109.46339 * 151.50246 * 24 23 22 45 45 H 1.08996 * 109.09946 * 300.92006 * 25 24 23 46 46 H 1.08997 * 109.20208 * 181.70357 * 25 24 23 47 47 H 1.08997 * 109.39913 * 273.58717 * 26 25 24 48 48 H 1.08998 * 109.32981 * 153.79392 * 26 25 24 49 49 H 1.09005 * 109.52868 * 345.79771 * 27 21 20 50 50 H 1.08994 * 109.53908 * 105.95533 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.5640 1.1788 6 1 5.2621 1.6943 1.1695 7 6 3.5067 1.5197 2.3862 8 7 2.3566 0.8852 2.4686 9 14 4.2194 2.3610 3.8942 10 1 3.8326 3.7947 3.8905 11 1 3.6924 1.7092 5.1200 12 1 5.6999 2.2477 3.8708 13 6 4.2369 1.3126 -1.2630 14 6 4.4919 -0.1675 -1.5547 15 7 5.2233 -0.2974 -2.8174 16 6 5.5596 -1.5183 -3.2788 17 8 5.2557 -2.5111 -2.6478 18 6 6.3006 -1.6498 -4.5569 19 7 6.6975 -0.6784 -5.3469 20 8 7.2820 -1.1072 -6.3188 21 6 7.3591 -2.4412 -6.2988 22 6 6.7267 -2.8472 -5.1775 23 6 6.5343 -4.2642 -4.7219 24 6 7.6816 -5.1243 -5.2650 25 6 7.3137 -5.6550 -6.6470 26 6 7.0897 -4.5097 -7.6305 27 6 8.0298 -3.3463 -7.2985 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.8789 0.8545 3.3122 36 1 5.1894 1.8372 -1.1864 37 1 3.6475 1.7460 -2.0710 38 1 3.5394 -0.6920 -1.6313 39 1 5.0813 -0.6008 -0.7467 40 1 5.4655 0.4952 -3.3213 41 1 6.5351 -4.3006 -3.6324 42 1 5.5843 -4.6429 -5.0989 43 1 8.5853 -4.5194 -5.3393 44 1 7.8595 -5.9611 -4.5895 45 1 6.4007 -6.2456 -6.5708 46 1 8.1203 -6.2897 -7.0137 47 1 6.0560 -4.1708 -7.5623 48 1 7.2901 -4.8594 -8.6433 49 1 8.2508 -2.7856 -8.2068 50 1 8.9562 -3.7341 -6.8750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267318431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:58 Heat of formation + Delta-G solvation = 17.998802 kcal Electronic energy + Delta-G solvation = -29297.916799 eV Core-core repulsion = 25328.076646 eV Total energy + Delta-G solvation = -3969.840153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -46.24077 -40.82997 -39.10352 -38.39860 -36.08559 -35.19346 -33.77728 -33.28708 -32.92801 -32.19789 -29.78410 -27.39668 -27.32108 -26.07154 -25.79812 -24.48895 -22.54266 -22.39756 -21.86372 -21.06768 -20.60930 -19.01249 -18.85769 -18.69222 -17.79784 -17.09653 -16.76846 -16.61197 -16.38653 -15.76302 -15.66915 -15.50034 -15.27905 -14.77846 -14.58489 -14.40136 -14.38382 -14.24421 -14.15189 -13.45241 -13.40692 -13.12051 -12.97647 -12.86338 -12.84497 -12.68532 -12.44009 -12.21677 -12.15672 -11.86970 -11.80012 -11.74834 -11.67300 -11.57705 -11.42663 -11.40397 -11.20071 -11.12159 -10.37301 -10.23662 -10.12039 -8.90513 -7.82503 -5.15572 -0.04289 0.59282 1.47773 1.50562 1.56869 1.73497 1.94940 1.96902 2.53324 2.79820 3.25373 3.43363 3.62599 3.72753 3.88527 3.93406 4.04413 4.12363 4.13917 4.21628 4.27818 4.37953 4.42995 4.48133 4.57378 4.64964 4.74151 4.80392 4.81894 4.87690 4.92551 4.94002 4.96957 4.99450 5.06598 5.16736 5.20546 5.27491 5.30070 5.34905 5.42022 5.43071 5.49101 5.52781 5.61954 5.84170 6.16131 6.23355 6.33373 6.85430 6.97107 7.18987 7.87589 8.27572 9.18442 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.002322 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.565368 B =12057.735302 C =12316.299574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.174 3.826 4 N -0.605 5.605 5 C -0.268 4.268 6 H 0.071 0.929 7 C -0.045 4.045 8 N -0.907 5.907 9 Si 0.956 3.044 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.278 1.278 13 C 0.146 3.854 14 C 0.111 3.889 15 N -0.698 5.698 16 C 0.589 3.411 17 O -0.557 6.557 18 C -0.043 4.043 19 N -0.347 5.347 20 O 0.134 5.866 21 C -0.016 4.016 22 C -0.165 4.165 23 C -0.047 4.047 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.037 4.037 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.247 0.753 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.038 0.962 40 H 0.414 0.586 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.105 0.895 49 H 0.115 0.885 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.722 -10.270 -24.300 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.049 3.951 4 N -0.326 5.326 5 C -0.397 4.397 6 H 0.089 0.911 7 C -0.241 4.241 8 N -0.553 5.553 9 Si 0.785 3.215 10 H -0.214 1.214 11 H -0.226 1.226 12 H -0.204 1.204 13 C 0.018 3.982 14 C -0.015 4.015 15 N -0.350 5.350 16 C 0.373 3.627 17 O -0.434 6.434 18 C -0.200 4.200 19 N -0.047 5.047 20 O 0.058 5.942 21 C -0.079 4.079 22 C -0.170 4.170 23 C -0.085 4.085 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.153 4.153 27 C -0.074 4.074 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.250 0.750 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.106 0.894 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.134 0.866 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.229 -9.591 -23.530 27.392 hybrid contribution -0.031 0.033 1.576 1.577 sum 10.198 -9.559 -21.954 26.026 Atomic orbital electron populations 1.21527 0.96011 1.00433 1.00671 1.22020 0.95176 0.99500 0.99356 1.20845 0.81449 0.94818 0.98006 1.44415 1.02379 1.83825 1.02001 1.19472 0.92357 1.43266 0.84612 0.91071 1.25365 0.98369 1.00781 0.99560 1.70323 1.18107 1.41816 1.25028 0.85455 0.77825 0.78672 0.79502 1.21400 1.22579 1.20360 1.21048 0.97038 0.91412 0.88662 1.22340 0.94662 1.01492 0.82977 1.45890 1.56704 1.07858 1.24547 1.17269 0.78618 0.83871 0.82944 1.90763 1.55696 1.38178 1.58751 1.23108 1.06148 0.92139 0.98571 1.74391 1.10570 1.22799 0.96944 1.84721 1.53975 1.21937 1.33577 1.24821 1.01388 0.82896 0.98836 1.20917 1.03201 0.97150 0.95757 1.20007 1.00546 0.87235 1.00665 1.21723 0.97022 0.99167 0.97809 1.21537 1.02826 0.97902 0.93505 1.21615 0.98729 0.93896 1.01049 1.20592 0.98528 0.92566 0.95758 0.92778 0.93510 0.93852 0.96047 0.92233 0.91866 0.95721 0.94321 0.92135 0.91307 0.93002 0.94337 0.75002 0.92050 0.90297 0.90681 0.90598 0.91741 0.89425 0.92916 0.87692 0.86647 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.91 71.98 0.71 -4.23 16 2 C -0.12 -5.59 5.61 30.59 0.17 -5.41 16 3 C 0.17 8.27 4.92 86.38 0.42 8.70 16 4 N -0.61 -29.59 2.54 -701.98 -1.78 -31.37 16 5 C -0.27 -14.45 9.70 84.03 0.81 -13.64 16 6 H 0.07 3.80 7.94 -2.91 -0.02 3.78 16 7 C -0.04 -2.45 4.89 84.86 0.41 -2.04 16 8 N -0.91 -51.05 8.62 21.65 0.19 -50.87 16 9 Si 0.96 44.88 29.62 68.60 2.03 46.91 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 C 0.15 5.80 5.82 86.38 0.50 6.30 16 14 C 0.11 4.51 5.88 86.38 0.51 5.02 16 15 N -0.70 -23.93 5.55 -465.50 -2.59 -26.51 16 16 C 0.59 21.36 7.85 86.93 0.68 22.05 16 17 O -0.56 -23.80 15.49 -3.70 -0.06 -23.86 16 18 C -0.04 -1.28 7.19 42.69 0.31 -0.97 16 19 N -0.35 -9.36 11.88 -49.01 -0.58 -9.94 16 20 O 0.13 2.89 11.19 74.94 0.84 3.72 16 21 C -0.02 -0.27 6.64 24.91 0.17 -0.11 16 22 C -0.16 -3.96 5.73 -20.02 -0.11 -4.07 16 23 C -0.05 -1.02 5.37 29.77 0.16 -0.86 16 24 C -0.12 -1.57 5.55 30.55 0.17 -1.40 16 25 C -0.12 -0.96 5.63 30.32 0.17 -0.79 16 26 C -0.12 -0.81 5.63 30.54 0.17 -0.63 16 27 C -0.04 -0.28 5.55 29.89 0.17 -0.11 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.02 0.96 5.97 -2.39 -0.01 0.94 16 32 H 0.06 3.24 6.33 -2.39 -0.02 3.23 16 33 H 0.06 3.37 5.85 -2.39 -0.01 3.36 16 34 H 0.02 1.06 7.98 -2.39 -0.02 1.04 16 35 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 36 H 0.06 2.29 8.03 -2.38 -0.02 2.27 16 37 H 0.07 2.40 7.95 -2.39 -0.02 2.39 16 38 H 0.05 2.29 5.92 -2.38 -0.01 2.28 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.41 12.04 8.24 -92.71 -0.76 11.28 16 41 H 0.06 1.71 7.06 -2.38 -0.02 1.70 16 42 H 0.08 1.69 7.83 -2.39 -0.02 1.67 16 43 H 0.07 0.89 5.69 -2.39 -0.01 0.87 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 0.58 8.09 -2.39 -0.02 0.56 16 46 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.05 0.58 7.79 -2.39 -0.02 0.56 16 48 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 50 H 0.12 0.56 6.38 -2.39 -0.02 0.55 16 Total: -1.00 -67.82 388.58 3.67 -64.15 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.19 Total: 19.97 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 5.43 Total: 7.79 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -4.76 Total: -118.69 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.78 Total: -20.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.82 3.67 -64.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267318431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.145 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds