Wall clock time and date at job start Tue Mar 31 2020 19:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47464 * 2 1 4 4 N 1.46499 * 109.47270 * 180.02562 * 3 2 1 5 5 C 1.36947 * 119.99694 * 275.30867 * 4 3 2 6 6 H 1.07995 * 119.99668 * 37.57730 * 5 4 3 7 7 C 1.38814 * 119.99679 * 217.57862 * 5 4 3 8 8 N 1.31618 * 120.00286 * 21.43150 * 7 5 4 9 9 Si 1.86798 * 119.99551 * 201.43537 * 7 5 4 10 10 H 1.48503 * 109.47569 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47341 * 120.00112 * 9 7 5 12 12 H 1.48501 * 109.47106 * 239.99835 * 9 7 5 13 13 C 1.46494 * 120.00206 * 95.31332 * 4 3 2 14 14 C 1.53009 * 109.47035 * 269.99719 * 13 4 3 15 15 N 1.46494 * 109.47035 * 179.97438 * 14 13 4 16 16 C 1.34781 * 119.99732 * 180.02562 * 15 14 13 17 17 O 1.21512 * 120.00003 * 0.02562 * 16 15 14 18 18 C 1.48162 * 119.99607 * 179.97438 * 16 15 14 19 19 C 1.39954 * 120.89564 * 359.97438 * 18 16 15 20 20 C 1.37987 * 119.13684 * 180.02562 * 19 18 16 21 21 N 1.31913 * 120.97459 * 359.74889 * 20 19 18 22 22 C 1.32169 * 121.96892 * 0.52460 * 21 20 19 23 23 O 1.35690 * 119.62402 * 179.75417 * 22 21 20 24 24 C 1.42901 * 116.99610 * 359.72545 * 23 22 21 25 25 C 1.53001 * 109.47052 * 210.00379 * 24 23 22 26 26 C 1.52994 * 109.47577 * 90.00153 * 24 23 22 27 27 C 1.38902 * 120.75742 * 359.47124 * 22 21 20 28 28 H 1.09005 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47113 * 299.99596 * 1 2 3 30 30 H 1.08998 * 109.47553 * 59.99877 * 1 2 3 31 31 H 1.09009 * 109.47200 * 240.00008 * 2 1 3 32 32 H 1.09005 * 109.47495 * 120.00497 * 2 1 3 33 33 H 1.08999 * 109.47050 * 59.99807 * 3 2 1 34 34 H 1.08998 * 109.46836 * 300.00562 * 3 2 1 35 35 H 0.96998 * 119.99890 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47207 * 149.99744 * 13 4 3 37 37 H 1.08999 * 109.47272 * 29.99836 * 13 4 3 38 38 H 1.09003 * 109.46747 * 59.99557 * 14 13 4 39 39 H 1.08999 * 109.47186 * 300.00169 * 14 13 4 40 40 H 0.97006 * 120.00447 * 0.02562 * 15 14 13 41 41 H 1.08001 * 120.43327 * 0.02562 * 19 18 16 42 42 H 1.08003 * 119.51163 * 180.02562 * 20 19 18 43 43 H 1.09004 * 109.47218 * 329.99738 * 24 23 22 44 44 H 1.08994 * 109.47421 * 59.99506 * 25 24 23 45 45 H 1.08995 * 109.47520 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.46585 * 299.99746 * 25 24 23 47 47 H 1.08999 * 109.47370 * 179.97438 * 26 24 23 48 48 H 1.09004 * 109.46856 * 300.00240 * 26 24 23 49 49 H 1.09004 * 109.47186 * 59.99564 * 26 24 23 50 50 H 1.07991 * 120.52744 * 180.27594 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3324 1.1800 6 1 3.8185 0.6869 1.9619 7 6 5.3624 2.0509 1.3716 8 7 5.6026 3.1237 0.6480 9 14 6.5990 1.4948 2.6565 10 1 6.0964 0.2706 3.3303 11 1 7.8977 1.2008 1.9991 12 1 6.7859 2.5714 3.6622 13 6 4.2370 1.5600 -1.2641 14 6 4.4918 0.1646 -1.8377 15 7 5.2232 0.2823 -3.1015 16 6 5.5594 -0.8258 -3.7913 17 8 5.2553 -1.9223 -3.3651 18 6 6.2987 -0.7067 -5.0697 19 6 6.6569 0.5468 -5.5787 20 6 7.3446 0.6155 -6.7730 21 7 7.6701 -0.4793 -7.4329 22 6 7.3481 -1.6834 -6.9930 23 8 7.7028 -2.7775 -7.7129 24 6 8.4130 -2.5497 -8.9318 25 6 8.0914 -3.6673 -9.9260 26 6 9.9168 -2.5345 -8.6507 27 6 6.6560 -1.8419 -5.7992 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 6.4215 3.6259 0.7822 36 1 5.1895 2.0596 -1.0871 37 1 3.6477 2.1421 -1.9726 38 1 3.5393 -0.3349 -2.0147 39 1 5.0811 -0.4175 -1.1292 40 1 5.4657 1.1577 -3.4420 41 1 6.3984 1.4487 -5.0436 42 1 7.6244 1.5797 -7.1711 43 1 8.1125 -1.5906 -9.3537 44 1 7.0200 -3.6782 -10.1263 45 1 8.6334 -3.4939 -10.8556 46 1 8.3919 -4.6264 -9.5041 47 1 10.4586 -2.3612 -9.5805 48 1 10.1460 -1.7382 -7.9424 49 1 10.2174 -3.4936 -8.2288 50 1 6.3987 -2.8276 -5.4410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267319339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:53 Heat of formation + Delta-G solvation = -30.443170 kcal Electronic energy + Delta-G solvation = -28520.126977 eV Core-core repulsion = 24548.186223 eV Total energy + Delta-G solvation = -3971.940754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.00290 -39.44974 -38.12608 -36.52876 -34.43415 -33.56100 -32.97906 -32.70702 -30.86068 -30.30350 -28.28712 -27.57785 -25.60263 -25.11891 -23.60612 -23.27761 -21.93886 -20.96711 -20.46506 -20.08814 -18.77139 -17.38214 -16.69885 -16.52678 -15.94815 -15.74549 -15.43602 -15.21808 -14.81911 -14.62047 -14.47115 -14.27229 -14.07833 -13.92144 -13.55384 -13.37397 -12.99034 -12.84209 -12.73253 -12.62725 -12.59144 -12.22557 -12.11728 -11.60541 -11.55356 -11.24830 -11.22553 -11.07779 -10.97823 -10.77192 -10.47742 -10.40387 -10.20151 -10.09551 -10.04884 -9.92362 -9.76591 -9.58795 -8.72797 -8.66650 -8.51521 -6.66950 -5.88243 -3.46862 0.59747 0.95569 2.68127 2.96257 3.30543 3.39397 3.41264 3.45055 3.73432 4.03545 4.42017 4.53839 4.57150 4.66344 4.79673 4.85280 4.87160 4.96700 5.22094 5.22910 5.39007 5.42648 5.43801 5.50062 5.53392 5.61758 5.65055 5.73789 5.79388 5.87352 5.90750 5.98006 6.06152 6.12175 6.19455 6.25601 6.38208 6.49361 6.59345 6.62704 6.73979 6.93814 6.95558 7.04611 7.15261 7.46747 7.58095 7.75425 7.77156 8.36888 8.43979 9.09937 9.71751 10.29359 11.11871 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.002373 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.856067 B =11797.230247 C =12868.688390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.260 4.260 6 H 0.063 0.937 7 C 0.013 3.987 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.137 3.863 14 C 0.096 3.904 15 N -0.707 5.707 16 C 0.549 3.451 17 O -0.533 6.533 18 C -0.045 4.045 19 C -0.182 4.182 20 C 0.137 3.863 21 N -0.530 5.530 22 C 0.320 3.680 23 O -0.300 6.300 24 C 0.081 3.919 25 C -0.151 4.151 26 C -0.169 4.169 27 C -0.136 4.136 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.398 0.602 41 H 0.144 0.856 42 H 0.166 0.834 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 -5.427 -19.333 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.009 3.991 14 C -0.029 4.029 15 N -0.358 5.358 16 C 0.334 3.666 17 O -0.410 6.410 18 C -0.056 4.056 19 C -0.203 4.203 20 C -0.018 4.018 21 N -0.255 5.255 22 C 0.141 3.859 23 O -0.208 6.208 24 C 0.025 3.975 25 C -0.208 4.208 26 C -0.226 4.226 27 C -0.158 4.158 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.233 0.767 41 H 0.162 0.838 42 H 0.183 0.817 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.694 -6.282 -19.678 20.985 hybrid contribution 0.547 0.213 1.122 1.266 sum 4.242 -6.069 -18.557 19.979 Atomic orbital electron populations 1.21720 0.97314 1.00428 1.01001 1.22190 0.93842 1.00912 1.01599 1.20944 0.84985 0.92993 0.98962 1.43605 0.99463 1.84770 1.02028 1.19064 1.05578 1.20382 0.93936 0.91975 1.25186 1.00832 0.94551 0.98135 1.69997 1.25627 1.14788 1.42505 0.86344 0.81485 0.78480 0.81203 1.19954 1.21370 1.21571 1.21068 1.00449 0.91030 0.86532 1.22585 0.94941 1.03149 0.82257 1.46061 1.57118 1.08204 1.24409 1.18099 0.79861 0.85073 0.83598 1.90776 1.54532 1.26386 1.69327 1.20309 0.96912 0.93294 0.95061 1.22225 1.01873 0.97777 0.98426 1.22360 0.92768 0.95854 0.90827 1.67118 1.24085 0.98416 1.35852 1.19622 0.91386 0.85500 0.89389 1.86323 1.70706 1.28233 1.35495 1.22353 0.91540 1.00710 0.82902 1.21912 1.02664 0.98427 0.97829 1.22221 0.94951 1.02842 1.02625 1.21142 1.00540 1.00891 0.93216 0.93793 0.93198 0.93466 0.92939 0.92322 0.93530 0.94731 0.93549 0.88309 0.95195 0.92623 0.91392 0.76700 0.83787 0.81707 0.89228 0.91775 0.90498 0.91580 0.91114 0.91925 0.91951 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.78 16 2 C -0.15 -2.62 6.23 -26.73 -0.17 -2.78 16 3 C 0.15 2.99 5.72 -4.04 -0.02 2.96 16 4 N -0.58 -13.61 2.43 -173.24 -0.42 -14.03 16 5 C -0.26 -6.81 9.45 -15.05 -0.14 -6.95 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 7 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 8 N -0.89 -24.14 11.47 55.49 0.64 -23.51 16 9 Si 0.90 21.10 29.60 -169.99 -5.03 16.07 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 C 0.14 2.92 5.45 -4.04 -0.02 2.90 16 14 C 0.10 1.87 6.00 -4.04 -0.02 1.85 16 15 N -0.71 -11.46 5.51 -61.15 -0.34 -11.80 16 16 C 0.55 9.25 7.80 -12.18 -0.09 9.16 16 17 O -0.53 -10.91 16.44 5.36 0.09 -10.82 16 18 C -0.04 -0.62 5.91 -104.68 -0.62 -1.24 16 19 C -0.18 -1.95 9.61 -39.03 -0.38 -2.33 16 20 C 0.14 1.35 11.17 -17.61 -0.20 1.15 16 21 N -0.53 -6.15 8.62 -13.37 -0.12 -6.26 16 22 C 0.32 4.08 7.45 -17.16 -0.13 3.95 16 23 O -0.30 -3.61 9.76 -18.77 -0.18 -3.79 16 24 C 0.08 0.74 3.10 -26.73 -0.08 0.66 16 25 C -0.15 -1.05 9.56 37.16 0.36 -0.69 16 26 C -0.17 -1.38 9.53 37.15 0.35 -1.03 16 27 C -0.14 -1.87 9.61 -38.83 -0.37 -2.24 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.97 6.64 -51.92 -0.34 0.62 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 35 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.10 2.37 5.52 -51.93 -0.29 2.08 16 37 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 38 H 0.06 1.11 6.64 -51.93 -0.34 0.77 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.40 5.32 6.61 -40.82 -0.27 5.05 16 41 H 0.14 1.22 6.53 -52.49 -0.34 0.88 16 42 H 0.17 1.06 8.06 -52.48 -0.42 0.63 16 43 H 0.09 0.84 6.98 -51.93 -0.36 0.48 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.15 2.15 7.74 -52.49 -0.41 1.74 16 LS Contribution 410.91 15.07 6.19 6.19 Total: -1.00 -30.74 410.91 -8.64 -39.39 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.22 Total: 4.70 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.26 Total: 3.86 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.24 Total: -55.59 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.10 Total: -14.61 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.74 -8.64 -39.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267319339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.943 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds