Wall clock time and date at job start Tue Mar 31 2020 19:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47464 * 2 1 4 4 N 1.46499 * 109.47270 * 180.02562 * 3 2 1 5 5 C 1.36947 * 119.99694 * 275.30867 * 4 3 2 6 6 H 1.07995 * 119.99668 * 37.57730 * 5 4 3 7 7 C 1.38814 * 119.99679 * 217.57862 * 5 4 3 8 8 N 1.31618 * 120.00286 * 21.43150 * 7 5 4 9 9 Si 1.86798 * 119.99551 * 201.43537 * 7 5 4 10 10 H 1.48503 * 109.47569 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47341 * 120.00112 * 9 7 5 12 12 H 1.48501 * 109.47106 * 239.99835 * 9 7 5 13 13 C 1.46494 * 120.00206 * 95.31332 * 4 3 2 14 14 C 1.53009 * 109.47035 * 269.99719 * 13 4 3 15 15 N 1.46494 * 109.47035 * 179.97438 * 14 13 4 16 16 C 1.34781 * 119.99732 * 180.02562 * 15 14 13 17 17 O 1.21512 * 120.00003 * 0.02562 * 16 15 14 18 18 C 1.48162 * 119.99607 * 179.97438 * 16 15 14 19 19 C 1.39954 * 120.89564 * 359.97438 * 18 16 15 20 20 C 1.37987 * 119.13684 * 180.02562 * 19 18 16 21 21 N 1.31913 * 120.97459 * 359.74889 * 20 19 18 22 22 C 1.32169 * 121.96892 * 0.52460 * 21 20 19 23 23 O 1.35690 * 119.62402 * 179.75417 * 22 21 20 24 24 C 1.42901 * 116.99610 * 359.72545 * 23 22 21 25 25 C 1.53001 * 109.47052 * 210.00379 * 24 23 22 26 26 C 1.52994 * 109.47577 * 90.00153 * 24 23 22 27 27 C 1.38902 * 120.75742 * 359.47124 * 22 21 20 28 28 H 1.09005 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47113 * 299.99596 * 1 2 3 30 30 H 1.08998 * 109.47553 * 59.99877 * 1 2 3 31 31 H 1.09009 * 109.47200 * 240.00008 * 2 1 3 32 32 H 1.09005 * 109.47495 * 120.00497 * 2 1 3 33 33 H 1.08999 * 109.47050 * 59.99807 * 3 2 1 34 34 H 1.08998 * 109.46836 * 300.00562 * 3 2 1 35 35 H 0.96998 * 119.99890 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47207 * 149.99744 * 13 4 3 37 37 H 1.08999 * 109.47272 * 29.99836 * 13 4 3 38 38 H 1.09003 * 109.46747 * 59.99557 * 14 13 4 39 39 H 1.08999 * 109.47186 * 300.00169 * 14 13 4 40 40 H 0.97006 * 120.00447 * 0.02562 * 15 14 13 41 41 H 1.08001 * 120.43327 * 0.02562 * 19 18 16 42 42 H 1.08003 * 119.51163 * 180.02562 * 20 19 18 43 43 H 1.09004 * 109.47218 * 329.99738 * 24 23 22 44 44 H 1.08994 * 109.47421 * 59.99506 * 25 24 23 45 45 H 1.08995 * 109.47520 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.46585 * 299.99746 * 25 24 23 47 47 H 1.08999 * 109.47370 * 179.97438 * 26 24 23 48 48 H 1.09004 * 109.46856 * 300.00240 * 26 24 23 49 49 H 1.09004 * 109.47186 * 59.99564 * 26 24 23 50 50 H 1.07991 * 120.52744 * 180.27594 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3324 1.1800 6 1 3.8185 0.6869 1.9619 7 6 5.3624 2.0509 1.3716 8 7 5.6026 3.1237 0.6480 9 14 6.5990 1.4948 2.6565 10 1 6.0964 0.2706 3.3303 11 1 7.8977 1.2008 1.9991 12 1 6.7859 2.5714 3.6622 13 6 4.2370 1.5600 -1.2641 14 6 4.4918 0.1646 -1.8377 15 7 5.2232 0.2823 -3.1015 16 6 5.5594 -0.8258 -3.7913 17 8 5.2553 -1.9223 -3.3651 18 6 6.2987 -0.7067 -5.0697 19 6 6.6569 0.5468 -5.5787 20 6 7.3446 0.6155 -6.7730 21 7 7.6701 -0.4793 -7.4329 22 6 7.3481 -1.6834 -6.9930 23 8 7.7028 -2.7775 -7.7129 24 6 8.4130 -2.5497 -8.9318 25 6 8.0914 -3.6673 -9.9260 26 6 9.9168 -2.5345 -8.6507 27 6 6.6560 -1.8419 -5.7992 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 6.4215 3.6259 0.7822 36 1 5.1895 2.0596 -1.0871 37 1 3.6477 2.1421 -1.9726 38 1 3.5393 -0.3349 -2.0147 39 1 5.0811 -0.4175 -1.1292 40 1 5.4657 1.1577 -3.4420 41 1 6.3984 1.4487 -5.0436 42 1 7.6244 1.5797 -7.1711 43 1 8.1125 -1.5906 -9.3537 44 1 7.0200 -3.6782 -10.1263 45 1 8.6334 -3.4939 -10.8556 46 1 8.3919 -4.6264 -9.5041 47 1 10.4586 -2.3612 -9.5805 48 1 10.1460 -1.7382 -7.9424 49 1 10.2174 -3.4936 -8.2288 50 1 6.3987 -2.8276 -5.4410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267319339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:52 Heat of formation + Delta-G solvation = -49.634427 kcal Electronic energy + Delta-G solvation = -28520.959173 eV Core-core repulsion = 24548.186223 eV Total energy + Delta-G solvation = -3972.772950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.97662 -40.69536 -39.09214 -38.24124 -35.92709 -34.61899 -34.27645 -33.83446 -32.57336 -31.24889 -29.84617 -28.17160 -27.33890 -26.34105 -24.87305 -24.38852 -22.99158 -22.50462 -21.87939 -21.39183 -19.89476 -18.64816 -18.23704 -17.59160 -17.06331 -16.86735 -16.81362 -16.57773 -16.41126 -15.92516 -15.66760 -15.42221 -15.31362 -14.90226 -14.86313 -14.62433 -14.40888 -14.30799 -14.07274 -13.34998 -13.29238 -13.19948 -13.11602 -13.04419 -12.90678 -12.87044 -12.65168 -12.50623 -12.22909 -12.03980 -11.94843 -11.87136 -11.80513 -11.68292 -11.47378 -11.26637 -11.09483 -10.70193 -10.54077 -10.12818 -9.61156 -8.59200 -7.86408 -5.48740 -0.44899 0.05762 1.41824 1.47516 1.55973 1.72351 1.75044 2.16680 2.49575 2.72745 3.19397 3.22525 3.44072 3.76447 3.85799 3.87392 3.97040 4.00653 4.02861 4.21828 4.27372 4.33142 4.37979 4.51266 4.57946 4.66783 4.68957 4.69246 4.73917 4.82475 4.84225 4.86014 4.88384 4.97403 5.00104 5.14289 5.18826 5.22620 5.25624 5.25956 5.29267 5.35719 5.44253 5.62897 5.65888 5.73772 6.20120 6.40605 6.47677 6.69127 7.04130 7.15698 7.82373 8.34253 9.09406 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.002373 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.856067 B =11797.230247 C =12868.688390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.268 4.268 6 H 0.050 0.950 7 C -0.027 4.027 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.287 1.287 13 C 0.144 3.856 14 C 0.117 3.883 15 N -0.697 5.697 16 C 0.550 3.450 17 O -0.577 6.577 18 C -0.058 4.058 19 C -0.172 4.172 20 C 0.147 3.853 21 N -0.529 5.529 22 C 0.315 3.685 23 O -0.315 6.315 24 C 0.073 3.927 25 C -0.147 4.147 26 C -0.165 4.165 27 C -0.155 4.155 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.051 0.949 35 H 0.254 0.746 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.414 0.586 41 H 0.171 0.829 42 H 0.209 0.791 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.046 0.954 49 H 0.059 0.941 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.640 -4.429 -21.342 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.398 4.398 6 H 0.068 0.932 7 C -0.225 4.225 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.214 1.214 13 C 0.017 3.983 14 C -0.009 4.009 15 N -0.349 5.349 16 C 0.337 3.663 17 O -0.457 6.457 18 C -0.068 4.068 19 C -0.192 4.192 20 C -0.008 4.008 21 N -0.254 5.254 22 C 0.137 3.863 23 O -0.223 6.223 24 C 0.018 3.982 25 C -0.204 4.204 26 C -0.222 4.222 27 C -0.177 4.177 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.252 0.748 41 H 0.188 0.812 42 H 0.226 0.774 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.083 0.917 47 H 0.112 0.888 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.932 -5.277 -21.715 22.690 hybrid contribution 0.469 -0.077 1.671 1.737 sum 4.401 -5.353 -20.043 21.208 Atomic orbital electron populations 1.21654 0.94292 1.01733 1.02024 1.22026 0.96409 0.98876 1.00240 1.21051 0.83303 0.94438 0.99185 1.43833 1.00864 1.85006 1.01952 1.19155 1.06149 1.19834 0.94707 0.93207 1.25710 1.02038 0.94789 0.99945 1.70070 1.25916 1.15421 1.43696 0.85540 0.79512 0.77944 0.79419 1.20013 1.21570 1.21351 1.20946 0.99458 0.91622 0.86260 1.22068 0.94440 1.01473 0.82910 1.45824 1.56681 1.09136 1.23221 1.18548 0.79178 0.84254 0.84320 1.90749 1.56293 1.28003 1.70652 1.20040 0.98060 0.94836 0.93898 1.22517 1.00827 0.97188 0.98680 1.23091 0.90946 0.96864 0.89926 1.67246 1.23818 0.98389 1.35934 1.19602 0.91403 0.86165 0.89177 1.86312 1.71037 1.28437 1.36531 1.22641 0.91855 1.01536 0.82195 1.21933 1.02820 0.97530 0.98155 1.22200 0.94512 1.02111 1.03377 1.21071 1.01954 1.00413 0.94257 0.92386 0.92594 0.92021 0.93603 0.94383 0.94615 0.93038 0.93632 0.90578 0.93275 0.92960 0.94830 0.74776 0.81210 0.77446 0.89370 0.92134 0.88068 0.91730 0.88792 0.93453 0.92197 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.14 -4.83 6.23 30.59 0.19 -4.64 16 3 C 0.15 5.84 5.72 86.38 0.49 6.33 16 4 N -0.60 -28.21 2.43 -702.01 -1.71 -29.92 16 5 C -0.27 -14.27 9.45 84.03 0.79 -13.48 16 6 H 0.05 2.72 7.92 -2.91 -0.02 2.70 16 7 C -0.03 -1.42 4.95 84.86 0.42 -1.00 16 8 N -0.91 -49.58 11.47 21.65 0.25 -49.33 16 9 Si 0.95 43.85 29.60 68.60 2.03 45.88 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.14 6.15 5.45 86.38 0.47 6.62 16 14 C 0.12 4.65 6.00 86.38 0.52 5.17 16 15 N -0.70 -22.36 5.51 -465.66 -2.57 -24.93 16 16 C 0.55 18.78 7.80 86.88 0.68 19.45 16 17 O -0.58 -24.58 16.44 -3.75 -0.06 -24.64 16 18 C -0.06 -1.56 5.91 -19.90 -0.12 -1.68 16 19 C -0.17 -3.26 9.61 22.63 0.22 -3.04 16 20 C 0.15 2.42 11.17 84.62 0.94 3.36 16 21 N -0.53 -11.24 8.62 -309.12 -2.66 -13.91 16 22 C 0.31 7.91 7.45 84.80 0.63 8.54 16 23 O -0.32 -7.56 9.76 -90.09 -0.88 -8.44 16 24 C 0.07 1.26 3.10 30.59 0.09 1.35 16 25 C -0.15 -1.82 9.56 71.98 0.69 -1.13 16 26 C -0.16 -2.47 9.53 71.98 0.69 -1.78 16 27 C -0.16 -4.36 9.61 22.75 0.22 -4.14 16 28 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.68 6.64 -2.38 -0.02 1.66 16 32 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 34 H 0.05 1.87 7.83 -2.39 -0.02 1.86 16 35 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 36 H 0.08 3.66 5.52 -2.39 -0.01 3.65 16 37 H 0.05 1.88 7.86 -2.39 -0.02 1.86 16 38 H 0.05 2.12 6.64 -2.39 -0.02 2.10 16 39 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.41 10.44 6.61 -92.70 -0.61 9.83 16 41 H 0.17 2.27 6.53 -2.91 -0.02 2.25 16 42 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.09 1.52 6.98 -2.38 -0.02 1.51 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 50 H 0.14 4.16 7.74 -2.92 -0.02 4.14 16 Total: -1.00 -68.25 410.91 2.36 -65.89 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.32 Total: 22.53 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 7.64 Total: 16.86 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -6.69 Total: -118.09 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.94 Total: -33.08 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.25 2.36 -65.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267319339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.259 kcal (2) G-P(sol) polarization free energy of solvation -68.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds