Wall clock time and date at job start Tue Mar 31 2020 19:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47066 * 2 1 4 4 N 1.46503 * 109.47261 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00023 * 89.99767 * 4 3 2 6 6 O 1.21285 * 119.99915 * 174.97904 * 5 4 3 7 7 C 1.50702 * 119.99996 * 354.98180 * 5 4 3 8 8 C 1.50707 * 109.46984 * 180.02562 * 7 5 4 9 9 C 1.41381 * 128.00504 * 270.00041 * 8 7 5 10 10 C 1.50703 * 126.80030 * 0.03404 * 9 8 7 11 11 N 1.30175 * 106.39483 * 180.02562 * 9 8 7 12 12 O 1.20923 * 111.60107 * 359.72055 * 11 9 8 13 13 C 1.34032 * 111.56995 * 0.45435 * 12 11 9 14 14 C 1.50700 * 126.77862 * 179.82671 * 13 12 11 15 15 C 1.46501 * 119.99664 * 270.00110 * 4 3 2 16 16 H 1.09006 * 110.63813 * 178.12190 * 15 4 3 17 17 C 1.55157 * 110.72253 * 54.78898 * 15 4 3 18 18 C 1.54910 * 101.58143 * 277.13690 * 17 15 4 19 19 N 1.47423 * 104.83328 * 322.99094 * 18 17 15 20 20 C 1.36932 * 125.65175 * 204.09475 * 19 18 17 21 21 H 1.07993 * 120.00810 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99555 * 0.03806 * 20 19 18 23 23 N 1.31617 * 120.00548 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99877 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46993 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46618 * 120.00072 * 24 22 20 27 27 H 1.48499 * 109.47152 * 239.99884 * 24 22 20 28 28 C 1.47033 * 108.70328 * 24.12610 * 19 18 17 29 29 H 1.09004 * 109.47355 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47645 * 300.00119 * 1 2 3 31 31 H 1.09007 * 109.46897 * 60.00430 * 1 2 3 32 32 H 1.09000 * 109.47167 * 240.00033 * 2 1 3 33 33 H 1.08999 * 109.46617 * 119.99782 * 2 1 3 34 34 H 1.09002 * 109.47594 * 59.99833 * 3 2 1 35 35 H 1.08997 * 109.47301 * 299.99946 * 3 2 1 36 36 H 1.08994 * 109.47090 * 60.00266 * 7 5 4 37 37 H 1.09000 * 109.46645 * 299.99675 * 7 5 4 38 38 H 1.08997 * 109.47192 * 90.00079 * 10 9 8 39 39 H 1.09005 * 109.46749 * 210.00125 * 10 9 8 40 40 H 1.08997 * 109.47454 * 330.00079 * 10 9 8 41 41 H 1.09007 * 109.47297 * 269.68737 * 14 13 12 42 42 H 1.08999 * 109.46853 * 29.68435 * 14 13 12 43 43 H 1.09000 * 109.47630 * 149.68389 * 14 13 12 44 44 H 1.09000 * 111.00270 * 35.20985 * 17 15 4 45 45 H 1.08996 * 111.00517 * 159.05882 * 17 15 4 46 46 H 1.09000 * 110.36719 * 204.14982 * 18 17 15 47 47 H 1.09003 * 110.36678 * 81.83038 * 18 17 15 48 48 H 0.96999 * 120.00508 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.88113 * 239.52672 * 28 19 18 50 50 H 1.09003 * 109.87953 * 118.35540 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1794 1.4423 -1.1663 6 8 5.3887 1.5343 -1.1678 7 6 3.4307 1.3279 -2.4692 8 6 4.4097 1.3511 -3.6147 9 6 4.8912 2.4743 -4.3256 10 6 4.5256 3.9171 -4.0892 11 7 5.7131 2.0154 -5.2248 12 8 5.8081 0.8112 -5.1679 13 6 5.0316 0.3009 -4.2019 14 6 4.8845 -1.1538 -3.8369 15 6 4.2369 1.4427 1.2697 16 1 5.3121 1.4093 1.0932 17 6 3.7864 0.2571 2.1635 18 6 2.5089 0.8332 2.8236 19 7 2.8153 2.2556 3.0610 20 6 2.2238 3.0528 4.0042 21 1 2.5192 4.0872 4.0992 22 6 1.2446 2.5313 4.8384 23 7 0.8850 1.2704 4.7233 24 14 0.4371 3.6190 6.1247 25 1 1.0137 4.9854 6.0501 26 1 -1.0245 3.6845 5.8705 27 1 0.6797 3.0519 7.4755 28 6 3.8608 2.6766 2.1168 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.7386 2.1644 -2.5652 37 1 2.8735 0.3912 -2.4869 38 1 5.2152 4.3529 -3.3663 39 1 4.5886 4.4665 -5.0285 40 1 3.5085 3.9754 -3.7017 41 1 4.0711 -1.5930 -4.4146 42 1 5.8130 -1.6798 -4.0588 43 1 4.6629 -1.2410 -2.7732 44 1 3.5528 -0.6202 1.5602 45 1 4.5423 0.0237 2.9132 46 1 2.3076 0.3259 3.7671 47 1 1.6571 0.7359 2.1504 48 1 0.2010 0.9059 5.3065 49 1 4.7341 3.0305 2.6644 50 1 3.4800 3.4676 1.4707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267548665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:09 Heat of formation + Delta-G solvation = 52.917523 kcal Electronic energy + Delta-G solvation = -30848.716653 eV Core-core repulsion = 26880.390690 eV Total energy + Delta-G solvation = -3968.325964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.94087 -40.17513 -37.73638 -35.33176 -35.11755 -33.72464 -32.94434 -31.92803 -30.15016 -29.15630 -28.70692 -27.65996 -27.05858 -25.80126 -24.40039 -22.47881 -21.49647 -20.62380 -20.20608 -20.05983 -18.60923 -17.80162 -17.23137 -17.02642 -16.87251 -15.81693 -15.35771 -14.78875 -14.68046 -14.33938 -14.07430 -13.81486 -13.64995 -13.57653 -13.31602 -13.24761 -13.07074 -12.90777 -12.65066 -12.53555 -12.36178 -12.11544 -11.97862 -11.77141 -11.65488 -11.47337 -11.35543 -11.05246 -11.02632 -10.92411 -10.74600 -10.29620 -10.25252 -10.13608 -9.95042 -9.89216 -9.59998 -9.53049 -9.09436 -8.69126 -8.30689 -6.88684 -5.71614 -3.12999 1.41095 2.13002 2.76815 3.03311 3.29018 3.35232 3.41989 3.43467 4.11021 4.36667 4.44027 4.62196 4.68874 4.80487 5.07290 5.12264 5.19471 5.20158 5.24946 5.34133 5.40176 5.41882 5.42617 5.47471 5.48637 5.56100 5.62708 5.65242 5.67878 5.72637 5.83645 5.85473 5.92452 6.06389 6.08286 6.21545 6.27538 6.34494 6.37865 6.47263 6.58597 6.62780 6.70833 7.02386 7.44696 7.57953 7.69828 7.79681 8.24999 8.29797 8.37715 9.16264 9.76581 10.40881 11.31721 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019523 B = 0.003049 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.894648 B = 9181.170267 C = 9553.095477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.096 3.904 4 N -0.589 5.589 5 C 0.514 3.486 6 O -0.542 6.542 7 C -0.062 4.062 8 C -0.180 4.180 9 C 0.034 3.966 10 C -0.076 4.076 11 N -0.371 5.371 12 O 0.094 5.906 13 C -0.020 4.020 14 C -0.073 4.073 15 C 0.127 3.873 16 H 0.098 0.902 17 C -0.158 4.158 18 C 0.138 3.862 19 N -0.602 5.602 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.127 3.873 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.034 0.966 48 H 0.251 0.749 49 H 0.031 0.969 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 -4.637 -16.396 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.026 4.026 4 N -0.321 5.321 5 C 0.301 3.699 6 O -0.420 6.420 7 C -0.102 4.102 8 C -0.184 4.184 9 C -0.125 4.125 10 C -0.134 4.134 11 N -0.078 5.078 12 O 0.030 5.970 13 C -0.083 4.083 14 C -0.131 4.131 15 C 0.023 3.977 16 H 0.116 0.884 17 C -0.198 4.198 18 C 0.014 3.986 19 N -0.329 5.329 20 C -0.350 4.350 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.000 4.000 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.121 0.879 47 H 0.052 0.948 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.834 -4.007 -17.172 17.860 hybrid contribution -1.011 0.469 1.337 1.741 sum 1.822 -3.539 -15.836 16.328 Atomic orbital electron populations 1.21684 0.95158 1.01640 1.02171 1.22179 0.96439 0.97216 1.02639 1.21968 0.78805 0.97475 1.04373 1.47918 1.07011 1.71823 1.05320 1.20390 0.87880 0.76618 0.85000 1.90685 1.14178 1.49869 1.87250 1.19977 0.96113 1.05285 0.88864 1.20283 1.04904 0.91714 1.01480 1.23344 0.96484 0.98601 0.94038 1.20166 1.02454 0.87775 1.02968 1.73793 1.19965 0.91493 1.22518 1.84762 1.51588 1.15730 1.44883 1.24137 0.94226 0.98072 0.91893 1.20333 1.03928 0.85909 1.02916 1.22119 0.96335 0.97030 0.82181 0.88440 1.23440 1.01667 0.96360 0.98290 1.22299 0.90804 0.84607 1.00909 1.44541 1.42576 1.08045 1.37749 1.19108 1.14636 0.92797 1.08417 0.90546 1.24744 0.99384 0.96490 0.99814 1.69796 1.33950 1.12128 1.41033 0.86040 0.78966 0.79382 0.81355 1.20598 1.21787 1.21789 1.21632 0.92728 0.94169 0.91445 0.92829 0.91490 0.93327 0.93000 0.89657 0.87024 0.91598 0.87743 0.87617 0.89937 0.90621 0.90203 0.89431 0.89739 0.89177 0.91768 0.91225 0.87853 0.94828 0.93824 0.95096 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.89 37.16 0.37 -1.40 16 2 C -0.15 -1.84 5.09 -26.73 -0.14 -1.97 16 3 C 0.10 1.35 4.26 -4.04 -0.02 1.33 16 4 N -0.59 -8.97 2.45 -164.03 -0.40 -9.37 16 5 C 0.51 7.64 7.66 -10.99 -0.08 7.56 16 6 O -0.54 -10.03 15.42 5.55 0.09 -9.94 16 7 C -0.06 -0.69 4.62 -29.03 -0.13 -0.83 16 8 C -0.18 -2.27 4.81 -104.42 -0.50 -2.77 16 9 C 0.03 0.46 7.33 -82.10 -0.60 -0.14 16 10 C -0.08 -0.81 10.39 36.01 0.37 -0.44 16 11 N -0.37 -5.43 12.07 33.42 0.40 -5.03 16 12 O 0.09 1.27 11.20 17.20 0.19 1.46 16 13 C -0.02 -0.23 7.49 -35.30 -0.26 -0.50 16 14 C -0.07 -0.58 10.24 36.01 0.37 -0.21 16 15 C 0.13 2.23 3.58 -66.10 -0.24 2.00 16 16 H 0.10 1.77 7.01 -51.93 -0.36 1.41 16 17 C -0.16 -2.83 6.09 -24.58 -0.15 -2.98 16 18 C 0.14 2.99 4.65 -2.53 -0.01 2.98 16 19 N -0.60 -14.27 2.97 -170.07 -0.51 -14.77 16 20 C -0.22 -5.83 10.27 -15.06 -0.15 -5.99 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -25.04 10.09 55.49 0.56 -24.48 16 24 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.13 2.59 6.25 -3.06 -0.02 2.57 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.54 6.94 -51.93 -0.36 0.18 16 33 H 0.09 1.25 4.34 -51.93 -0.23 1.02 16 34 H 0.11 1.99 5.18 -51.93 -0.27 1.72 16 35 H 0.07 0.76 6.48 -51.93 -0.34 0.42 16 36 H 0.10 1.00 6.77 -51.93 -0.35 0.64 16 37 H 0.11 0.95 6.87 -51.93 -0.36 0.59 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.71 7.66 -51.93 -0.40 0.31 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.73 8.06 -51.93 -0.42 0.32 16 44 H 0.06 1.03 6.44 -51.93 -0.33 0.70 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.10 2.63 5.87 -51.93 -0.30 2.33 16 47 H 0.03 0.72 3.98 -51.93 -0.21 0.51 16 48 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -31.26 386.22 -7.86 -39.11 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.69 Total: 2.13 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.30 Total: -1.12 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.06 Total: -53.66 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.28 Total: -8.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.26 -7.86 -39.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267548665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.032 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds