Wall clock time and date at job start Tue Mar 31 2020 19:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47066 * 2 1 4 4 N 1.46503 * 109.47261 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00023 * 89.99767 * 4 3 2 6 6 O 1.21285 * 119.99915 * 174.97904 * 5 4 3 7 7 C 1.50702 * 119.99996 * 354.98180 * 5 4 3 8 8 C 1.50707 * 109.46984 * 180.02562 * 7 5 4 9 9 C 1.41381 * 128.00504 * 270.00041 * 8 7 5 10 10 C 1.50703 * 126.80030 * 0.03404 * 9 8 7 11 11 N 1.30175 * 106.39483 * 180.02562 * 9 8 7 12 12 O 1.20923 * 111.60107 * 359.72055 * 11 9 8 13 13 C 1.34032 * 111.56995 * 0.45435 * 12 11 9 14 14 C 1.50700 * 126.77862 * 179.82671 * 13 12 11 15 15 C 1.46501 * 119.99664 * 270.00110 * 4 3 2 16 16 H 1.09006 * 110.63813 * 178.12190 * 15 4 3 17 17 C 1.55157 * 110.72253 * 54.78898 * 15 4 3 18 18 C 1.54910 * 101.58143 * 277.13690 * 17 15 4 19 19 N 1.47423 * 104.83328 * 322.99094 * 18 17 15 20 20 C 1.36932 * 125.65175 * 204.09475 * 19 18 17 21 21 H 1.07993 * 120.00810 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99555 * 0.03806 * 20 19 18 23 23 N 1.31617 * 120.00548 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99877 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46993 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46618 * 120.00072 * 24 22 20 27 27 H 1.48499 * 109.47152 * 239.99884 * 24 22 20 28 28 C 1.47033 * 108.70328 * 24.12610 * 19 18 17 29 29 H 1.09004 * 109.47355 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47645 * 300.00119 * 1 2 3 31 31 H 1.09007 * 109.46897 * 60.00430 * 1 2 3 32 32 H 1.09000 * 109.47167 * 240.00033 * 2 1 3 33 33 H 1.08999 * 109.46617 * 119.99782 * 2 1 3 34 34 H 1.09002 * 109.47594 * 59.99833 * 3 2 1 35 35 H 1.08997 * 109.47301 * 299.99946 * 3 2 1 36 36 H 1.08994 * 109.47090 * 60.00266 * 7 5 4 37 37 H 1.09000 * 109.46645 * 299.99675 * 7 5 4 38 38 H 1.08997 * 109.47192 * 90.00079 * 10 9 8 39 39 H 1.09005 * 109.46749 * 210.00125 * 10 9 8 40 40 H 1.08997 * 109.47454 * 330.00079 * 10 9 8 41 41 H 1.09007 * 109.47297 * 269.68737 * 14 13 12 42 42 H 1.08999 * 109.46853 * 29.68435 * 14 13 12 43 43 H 1.09000 * 109.47630 * 149.68389 * 14 13 12 44 44 H 1.09000 * 111.00270 * 35.20985 * 17 15 4 45 45 H 1.08996 * 111.00517 * 159.05882 * 17 15 4 46 46 H 1.09000 * 110.36719 * 204.14982 * 18 17 15 47 47 H 1.09003 * 110.36678 * 81.83038 * 18 17 15 48 48 H 0.96999 * 120.00508 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.88113 * 239.52672 * 28 19 18 50 50 H 1.09003 * 109.87953 * 118.35540 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1794 1.4423 -1.1663 6 8 5.3887 1.5343 -1.1678 7 6 3.4307 1.3279 -2.4692 8 6 4.4097 1.3511 -3.6147 9 6 4.8912 2.4743 -4.3256 10 6 4.5256 3.9171 -4.0892 11 7 5.7131 2.0154 -5.2248 12 8 5.8081 0.8112 -5.1679 13 6 5.0316 0.3009 -4.2019 14 6 4.8845 -1.1538 -3.8369 15 6 4.2369 1.4427 1.2697 16 1 5.3121 1.4093 1.0932 17 6 3.7864 0.2571 2.1635 18 6 2.5089 0.8332 2.8236 19 7 2.8153 2.2556 3.0610 20 6 2.2238 3.0528 4.0042 21 1 2.5192 4.0872 4.0992 22 6 1.2446 2.5313 4.8384 23 7 0.8850 1.2704 4.7233 24 14 0.4371 3.6190 6.1247 25 1 1.0137 4.9854 6.0501 26 1 -1.0245 3.6845 5.8705 27 1 0.6797 3.0519 7.4755 28 6 3.8608 2.6766 2.1168 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.7386 2.1644 -2.5652 37 1 2.8735 0.3912 -2.4869 38 1 5.2152 4.3529 -3.3663 39 1 4.5886 4.4665 -5.0285 40 1 3.5085 3.9754 -3.7017 41 1 4.0711 -1.5930 -4.4146 42 1 5.8130 -1.6798 -4.0588 43 1 4.6629 -1.2410 -2.7732 44 1 3.5528 -0.6202 1.5602 45 1 4.5423 0.0237 2.9132 46 1 2.3076 0.3259 3.7671 47 1 1.6571 0.7359 2.1504 48 1 0.2010 0.9059 5.3065 49 1 4.7341 3.0305 2.6644 50 1 3.4800 3.4676 1.4707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267548665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:08 Heat of formation + Delta-G solvation = 35.762169 kcal Electronic energy + Delta-G solvation = -30849.460565 eV Core-core repulsion = 26880.390690 eV Total energy + Delta-G solvation = -3969.069876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.88687 -41.45259 -39.16938 -36.53118 -36.27121 -34.64816 -34.37901 -33.38468 -31.42468 -30.57234 -29.59886 -29.03985 -27.97269 -27.13100 -26.11467 -23.56885 -22.57743 -21.93010 -21.80709 -21.03913 -19.86255 -18.92558 -18.82352 -18.33410 -17.86165 -17.12745 -16.70512 -16.41283 -15.85404 -15.63081 -15.31188 -15.11267 -14.72194 -14.46532 -14.31492 -14.29546 -14.00377 -13.90012 -13.81409 -13.67037 -13.42944 -13.34630 -13.16424 -13.09276 -12.94413 -12.87474 -12.78934 -12.55822 -12.54523 -12.01696 -11.97039 -11.89520 -11.81071 -11.72425 -11.38360 -11.32068 -10.97597 -10.70345 -10.62016 -10.03035 -9.60070 -8.81199 -7.72722 -5.15535 0.51616 1.17149 1.48379 1.50135 1.58906 1.62922 2.06000 2.25150 2.51873 3.23472 3.37181 3.53426 3.60305 3.75734 3.80729 3.91177 3.96334 4.06677 4.12662 4.25970 4.34022 4.36715 4.46905 4.50894 4.58224 4.63499 4.67643 4.70028 4.71205 4.75050 4.77085 4.82374 4.88624 4.90687 4.94519 5.02702 5.06721 5.12916 5.14482 5.26955 5.31165 5.42710 5.50518 5.53894 5.70064 5.79718 5.90128 6.37725 6.52328 7.16764 7.20399 7.32616 7.82414 8.45969 9.27732 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019523 B = 0.003049 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.894648 B = 9181.170267 C = 9553.095477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.099 3.901 4 N -0.588 5.588 5 C 0.516 3.484 6 O -0.581 6.581 7 C -0.052 4.052 8 C -0.199 4.199 9 C 0.022 3.978 10 C -0.077 4.077 11 N -0.402 5.402 12 O 0.080 5.920 13 C -0.016 4.016 14 C -0.074 4.074 15 C 0.140 3.860 16 H 0.095 0.905 17 C -0.143 4.143 18 C 0.145 3.855 19 N -0.618 5.618 20 C -0.236 4.236 21 H 0.072 0.928 22 C -0.055 4.055 23 N -0.938 5.938 24 Si 0.971 3.029 25 H -0.274 1.274 26 H -0.290 1.290 27 H -0.295 1.295 28 C 0.128 3.872 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.246 0.754 49 H 0.023 0.977 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -5.424 -18.132 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.023 4.023 4 N -0.319 5.319 5 C 0.306 3.694 6 O -0.461 6.461 7 C -0.092 4.092 8 C -0.203 4.203 9 C -0.137 4.137 10 C -0.134 4.134 11 N -0.112 5.112 12 O 0.019 5.981 13 C -0.079 4.079 14 C -0.131 4.131 15 C 0.036 3.964 16 H 0.113 0.887 17 C -0.182 4.182 18 C 0.021 3.979 19 N -0.345 5.345 20 C -0.365 4.365 21 H 0.090 0.910 22 C -0.249 4.249 23 N -0.588 5.588 24 Si 0.800 3.200 25 H -0.198 1.198 26 H -0.217 1.217 27 H -0.222 1.222 28 C 0.002 3.998 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.041 0.959 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.861 -4.805 -18.930 19.619 hybrid contribution -0.674 0.722 1.863 2.109 sum 1.187 -4.083 -17.067 17.589 Atomic orbital electron populations 1.21638 0.94688 1.02243 1.01610 1.22107 0.96728 0.96029 1.03024 1.21979 0.77775 0.98550 1.03995 1.47909 1.07469 1.71860 1.04614 1.21015 0.87504 0.75155 0.85717 1.90679 1.16136 1.51527 1.87757 1.20026 0.95643 1.07841 0.85647 1.20508 1.05984 0.91596 1.02225 1.23870 0.96039 1.00012 0.93799 1.20268 1.03312 0.86520 1.03338 1.73782 1.21290 0.92133 1.23953 1.84722 1.52150 1.15528 1.45697 1.24887 0.92682 0.99718 0.90646 1.20556 1.05608 0.83566 1.03387 1.21785 0.96424 0.95161 0.83051 0.88708 1.23281 0.99475 0.97192 0.98267 1.22106 0.92877 0.83511 0.99377 1.44726 1.43053 1.08784 1.37907 1.19351 1.14899 0.93114 1.09146 0.90976 1.25424 1.00157 0.97703 1.01597 1.70024 1.34107 1.13170 1.41502 0.85125 0.77868 0.78209 0.78782 1.19834 1.21745 1.22199 1.21679 0.91470 0.95503 0.91191 0.91688 0.95022 0.90856 0.89672 0.92068 0.91120 0.88254 0.85522 0.84470 0.90839 0.89714 0.88155 0.86478 0.88820 0.88964 0.89319 0.91681 0.91762 0.94307 0.94378 0.95929 0.95883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.89 71.98 0.71 -2.36 16 2 C -0.14 -3.11 5.09 30.59 0.16 -2.95 16 3 C 0.10 2.54 4.26 86.38 0.37 2.91 16 4 N -0.59 -16.67 2.45 -791.25 -1.94 -18.60 16 5 C 0.52 14.00 7.66 87.66 0.67 14.67 16 6 O -0.58 -20.62 15.42 -3.04 -0.05 -20.66 16 7 C -0.05 -0.95 4.62 29.10 0.13 -0.82 16 8 C -0.20 -4.50 4.81 -19.73 -0.10 -4.59 16 9 C 0.02 0.55 7.33 43.58 0.32 0.87 16 10 C -0.08 -1.52 10.39 71.24 0.74 -0.78 16 11 N -0.40 -11.53 12.07 -49.56 -0.60 -12.13 16 12 O 0.08 2.09 11.20 71.71 0.80 2.89 16 13 C -0.02 -0.33 7.49 25.04 0.19 -0.15 16 14 C -0.07 -0.91 10.24 71.24 0.73 -0.18 16 15 C 0.14 4.85 3.58 46.18 0.17 5.01 16 16 H 0.09 3.39 7.01 -2.38 -0.02 3.37 16 17 C -0.14 -5.04 6.09 31.99 0.19 -4.85 16 18 C 0.15 6.41 4.65 86.86 0.40 6.82 16 19 N -0.62 -29.88 2.97 -691.98 -2.06 -31.93 16 20 C -0.24 -12.69 10.27 84.03 0.86 -11.82 16 21 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 22 C -0.06 -2.99 5.49 84.86 0.47 -2.53 16 23 N -0.94 -52.27 10.09 21.65 0.22 -52.05 16 24 Si 0.97 44.12 29.55 68.60 2.03 46.15 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 28 C 0.13 5.26 6.25 86.73 0.54 5.81 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.03 0.89 8.11 -2.39 -0.02 0.87 16 31 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.08 1.34 6.94 -2.39 -0.02 1.33 16 33 H 0.06 1.67 4.34 -2.39 -0.01 1.66 16 34 H 0.07 2.48 5.18 -2.39 -0.01 2.46 16 35 H 0.10 1.87 6.48 -2.39 -0.02 1.86 16 36 H 0.13 1.80 6.77 -2.39 -0.02 1.78 16 37 H 0.14 1.67 6.87 -2.39 -0.02 1.65 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.10 1.51 7.66 -2.39 -0.02 1.49 16 41 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.14 8.06 -2.39 -0.02 1.12 16 44 H 0.09 2.69 6.44 -2.39 -0.02 2.68 16 45 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.06 3.38 5.87 -2.39 -0.01 3.36 16 47 H 0.04 1.68 3.98 -2.39 -0.01 1.67 16 48 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 49 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.02 0.96 8.04 -2.39 -0.02 0.94 16 Total: -1.00 -70.59 386.22 5.92 -64.67 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.95 Total: 16.62 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.56 Total: 5.05 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -4.37 Total: -114.72 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.76 Total: -17.78 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -70.59 5.92 -64.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267548665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.432 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds