Wall clock time and date at job start Tue Mar 31 2020 18:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 H 1.08995 * 109.46932 * 304.99605 * 3 2 1 5 5 C 1.53000 * 109.46719 * 184.99493 * 3 2 1 6 6 N 1.46496 * 109.46988 * 184.99641 * 5 3 2 7 7 C 1.34774 * 120.00465 * 180.02562 * 6 5 3 8 8 O 1.21650 * 119.99635 * 354.86125 * 7 6 5 9 9 C 1.47080 * 120.00561 * 174.86942 * 7 6 5 10 10 C 1.39335 * 120.59016 * 185.79917 * 9 7 6 11 11 C 1.39476 * 118.96087 * 179.97438 * 10 9 7 12 12 C 1.35753 * 120.13055 * 359.97438 * 11 10 9 13 13 N 1.35433 * 121.23106 * 0.02562 * 12 11 10 14 14 C 1.46502 * 119.47264 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46840 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47107 * 120.00157 * 14 13 12 17 17 C 1.53006 * 109.47008 * 240.00138 * 14 13 12 18 18 C 1.34655 * 121.05645 * 359.73568 * 13 12 11 19 19 O 1.21890 * 120.10282 * 180.28525 * 18 13 12 20 20 N 1.46497 * 109.47083 * 65.00178 * 3 2 1 21 21 C 1.36940 * 119.99716 * 274.99656 * 20 3 2 22 22 H 1.08000 * 119.99990 * 0.02562 * 21 20 3 23 23 C 1.38805 * 120.00220 * 179.72533 * 21 20 3 24 24 N 1.31620 * 119.99896 * 0.27594 * 23 21 20 25 25 Si 1.86799 * 120.00232 * 180.27589 * 23 21 20 26 26 H 1.48495 * 109.47074 * 60.00227 * 25 23 21 27 27 H 1.48501 * 109.47063 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47152 * 299.99919 * 25 23 21 29 29 H 1.09007 * 109.46442 * 60.00060 * 1 2 3 30 30 H 1.08996 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47161 * 300.00339 * 1 2 3 32 32 H 1.09001 * 109.47161 * 239.99661 * 2 1 3 33 33 H 1.09002 * 109.46754 * 119.99617 * 2 1 3 34 34 H 1.09000 * 109.47796 * 305.00096 * 5 3 2 35 35 H 1.09007 * 109.47095 * 65.00559 * 5 3 2 36 36 H 0.97003 * 120.00082 * 0.02562 * 6 5 3 37 37 H 1.08006 * 120.52250 * 359.97438 * 10 9 7 38 38 H 1.08005 * 119.93070 * 179.97438 * 11 10 9 39 39 H 1.07999 * 119.38314 * 180.02562 * 12 11 10 40 40 H 1.08995 * 109.47215 * 60.00156 * 15 14 13 41 41 H 1.08997 * 109.46733 * 180.02562 * 15 14 13 42 42 H 1.09003 * 109.46896 * 299.99623 * 15 14 13 43 43 H 1.08994 * 109.47151 * 60.00081 * 16 14 13 44 44 H 1.09001 * 109.46796 * 180.02562 * 16 14 13 45 45 H 1.09001 * 109.47128 * 299.99577 * 16 14 13 46 46 H 1.09004 * 109.46818 * 59.99989 * 17 14 13 47 47 H 1.09001 * 109.46968 * 179.97438 * 17 14 13 48 48 H 1.08994 * 109.47246 * 299.99916 * 17 14 13 49 49 H 0.97000 * 120.00863 * 94.99676 * 20 3 2 50 50 H 0.97000 * 120.00442 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1256 6 7 4.0631 2.8167 -0.0059 7 6 5.3857 3.0629 -0.0867 8 8 6.1728 2.1387 -0.1651 9 6 5.8775 4.4491 -0.0800 10 6 7.2284 4.7231 -0.2833 11 6 7.6577 6.0501 -0.2706 12 6 6.7663 7.0527 -0.0632 13 7 5.4519 6.7938 0.1352 14 6 4.5234 7.9055 0.3549 15 6 5.2916 9.2280 0.3103 16 6 3.4538 7.9005 -0.7391 17 6 3.8550 7.7492 1.7224 18 6 4.9837 5.5313 0.1280 19 8 3.7964 5.3185 0.3032 20 7 1.6525 2.0975 1.2518 21 6 0.4157 2.6735 1.3688 22 1 -0.2742 2.6446 0.5383 23 6 0.0463 3.2891 2.5567 24 7 0.8868 3.3240 3.5690 25 14 -1.6438 4.0682 2.7189 26 1 -2.6880 3.0329 2.5115 27 1 -1.7902 4.6550 4.0751 28 1 -1.7963 5.1364 1.6987 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.9955 0.8310 0.6660 35 1 3.8500 1.0376 -1.0960 36 1 3.4411 3.5482 0.1315 37 1 7.9322 3.9206 -0.4482 38 1 8.7014 6.2804 -0.4262 39 1 7.1118 8.0759 -0.0562 40 1 5.7674 9.3391 -0.6640 41 1 4.6009 10.0550 0.4742 42 1 6.0538 9.2318 1.0895 43 1 2.9065 6.9584 -0.7077 44 1 2.7633 8.7279 -0.5758 45 1 3.9299 8.0119 -1.7132 46 1 4.6171 7.7528 2.5017 47 1 3.1646 8.5766 1.8860 48 1 3.3077 6.8071 1.7537 49 1 2.2719 2.1232 1.9979 50 1 0.6289 3.7545 4.3991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267822739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:28 Heat of formation + Delta-G solvation = -23.975348 kcal Electronic energy + Delta-G solvation = -30747.948768 eV Core-core repulsion = 26776.288479 eV Total energy + Delta-G solvation = -3971.660289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85518 -39.05482 -37.16300 -36.75160 -36.21682 -33.32074 -32.25627 -32.11549 -30.26214 -29.56869 -28.27583 -27.47039 -27.41859 -24.74285 -23.70199 -23.19665 -22.25998 -20.84160 -19.97893 -19.58609 -17.78387 -17.27111 -17.12614 -16.70466 -15.92396 -15.77160 -15.14758 -15.03282 -14.53305 -14.43488 -14.17548 -13.95079 -13.83805 -13.72793 -13.06969 -12.97512 -12.82826 -12.72342 -12.50541 -12.35557 -12.20415 -12.15959 -12.12494 -11.90119 -11.60045 -11.35585 -11.28659 -11.26042 -10.83250 -10.76580 -10.61457 -10.32034 -10.07853 -10.04088 -9.91554 -9.61336 -9.45019 -9.36439 -8.79190 -8.33499 -7.96018 -6.84943 -5.64630 -2.92178 0.44804 1.80969 2.39367 3.05645 3.48836 3.53284 3.53773 3.88996 3.96860 4.22289 4.29310 4.54821 4.66276 4.67497 4.79134 4.87798 5.07067 5.13459 5.23343 5.25795 5.50204 5.50827 5.60123 5.60881 5.62119 5.68538 5.73614 5.78087 5.84619 6.00171 6.06857 6.08945 6.12878 6.16393 6.20735 6.33666 6.35809 6.46547 6.57850 6.69325 6.72510 6.77551 6.98035 7.14278 7.26101 7.36097 7.79842 7.97879 8.42563 8.52254 8.97501 9.63924 10.21024 10.57105 11.57605 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.004568 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.952734 B = 6128.392007 C = 8244.598502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.165 3.835 4 H 0.051 0.949 5 C 0.112 3.888 6 N -0.697 5.697 7 C 0.569 3.431 8 O -0.570 6.570 9 C -0.266 4.266 10 C 0.049 3.951 11 C -0.247 4.247 12 C 0.150 3.850 13 N -0.482 5.482 14 C 0.146 3.854 15 C -0.163 4.163 16 C -0.165 4.165 17 C -0.167 4.167 18 C 0.524 3.476 19 O -0.508 6.508 20 N -0.717 5.717 21 C -0.228 4.228 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.900 3.100 26 H -0.287 1.287 27 H -0.293 1.293 28 H -0.288 1.288 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.426 0.574 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.385 0.615 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.540 12.349 -9.278 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.054 3.946 4 H 0.069 0.931 5 C -0.013 4.013 6 N -0.358 5.358 7 C 0.355 3.645 8 O -0.452 6.452 9 C -0.273 4.273 10 C 0.026 3.974 11 C -0.271 4.271 12 C 0.019 3.981 13 N -0.191 5.191 14 C 0.063 3.937 15 C -0.220 4.220 16 C -0.223 4.223 17 C -0.224 4.224 18 C 0.325 3.675 19 O -0.387 6.387 20 N -0.359 5.359 21 C -0.359 4.359 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.732 3.268 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.215 1.215 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.275 0.725 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.185 0.815 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.115 0.885 49 H 0.219 0.781 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.965 11.724 -9.211 19.758 hybrid contribution -0.813 0.833 0.511 1.272 sum 12.152 12.557 -8.700 19.520 Atomic orbital electron populations 1.21769 0.95830 0.99473 1.03234 1.22075 0.96862 0.98555 0.99911 1.20525 0.90061 0.92564 0.91437 0.93118 1.21653 0.95607 0.83354 1.00660 1.46571 1.07491 1.11602 1.70095 1.17438 0.83095 0.86861 0.77065 1.90723 1.56175 1.44991 1.53328 1.21147 0.94692 0.94126 1.17318 1.21957 0.94366 0.96926 0.84189 1.20605 1.00543 0.91710 1.14201 1.22285 0.83096 1.01510 0.91177 1.45759 1.07725 1.09110 1.56480 1.21062 0.89765 0.84437 0.98408 1.22307 1.01294 0.95933 1.02504 1.22252 0.98246 1.05491 0.96275 1.22267 1.01264 1.05781 0.93122 1.17079 0.89318 0.81611 0.79482 1.90747 1.15669 1.81740 1.50544 1.42380 1.16663 1.65671 1.11166 1.19124 0.91645 1.27569 0.97608 0.91198 1.24671 0.97784 1.01752 0.96495 1.69664 1.34990 1.49323 1.03779 0.86375 0.84646 0.79267 0.76542 1.21442 1.21949 1.21463 0.94202 0.94985 0.89650 0.93942 0.92551 0.92020 0.92263 0.72545 0.83624 0.83274 0.81548 0.91415 0.89841 0.91323 0.88905 0.90805 0.92609 0.92480 0.90869 0.88480 0.78104 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.18 37.16 0.34 -2.46 16 2 C -0.13 -2.52 5.61 -26.73 -0.15 -2.67 16 3 C 0.16 3.46 2.59 -67.93 -0.18 3.28 16 4 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 5 C 0.11 2.24 5.24 -4.04 -0.02 2.22 16 6 N -0.70 -14.55 5.30 -61.49 -0.33 -14.88 16 7 C 0.57 11.38 7.74 -12.68 -0.10 11.29 16 8 O -0.57 -12.29 16.41 5.23 0.09 -12.21 16 9 C -0.27 -4.38 5.92 -104.51 -0.62 -5.00 16 10 C 0.05 0.60 9.70 -38.71 -0.38 0.23 16 11 C -0.25 -2.09 9.99 -40.01 -0.40 -2.48 16 12 C 0.15 1.23 9.58 -16.85 -0.16 1.07 16 13 N -0.48 -5.68 2.53 -105.38 -0.27 -5.95 16 14 C 0.15 1.53 1.02 -131.82 -0.13 1.39 16 15 C -0.16 -0.99 7.09 37.16 0.26 -0.73 16 16 C -0.17 -1.86 8.39 37.16 0.31 -1.55 16 17 C -0.17 -2.13 8.40 37.16 0.31 -1.82 16 18 C 0.52 8.55 6.84 -14.92 -0.10 8.44 16 19 O -0.51 -10.06 9.83 5.02 0.05 -10.01 16 20 N -0.72 -18.14 4.51 -53.43 -0.24 -18.38 16 21 C -0.23 -6.25 7.75 -15.06 -0.12 -6.37 16 22 H 0.07 1.87 7.32 -52.49 -0.38 1.48 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 25 Si 0.90 22.62 29.55 -169.99 -5.02 17.59 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.92 5.99 -51.93 -0.31 1.61 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.43 9.54 4.74 -40.82 -0.19 9.35 16 37 H 0.15 1.67 7.71 -52.48 -0.40 1.27 16 38 H 0.15 0.74 8.06 -52.48 -0.42 0.31 16 39 H 0.17 0.70 5.55 -52.49 -0.29 0.40 16 40 H 0.07 0.31 7.41 -51.93 -0.38 -0.07 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.35 7.41 -51.93 -0.38 -0.04 16 43 H 0.09 1.40 6.10 -51.93 -0.32 1.09 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.10 1.70 6.14 -51.93 -0.32 1.38 16 49 H 0.38 10.71 7.80 -40.82 -0.32 10.39 16 50 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -34.32 393.19 -8.23 -42.55 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -7.94 Total: 18.48 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.22 Total: 4.43 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -0.11 Total: -66.76 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.14 Total: -22.21 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.32 -8.23 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267822739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.572 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds