Wall clock time and date at job start Tue Mar 31 2020 18:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 H 1.08995 * 109.46932 * 304.99605 * 3 2 1 5 5 C 1.53000 * 109.46719 * 184.99493 * 3 2 1 6 6 N 1.46496 * 109.46988 * 184.99641 * 5 3 2 7 7 C 1.34774 * 120.00465 * 180.02562 * 6 5 3 8 8 O 1.21650 * 119.99635 * 354.86125 * 7 6 5 9 9 C 1.47080 * 120.00561 * 174.86942 * 7 6 5 10 10 C 1.39335 * 120.59016 * 185.79917 * 9 7 6 11 11 C 1.39476 * 118.96087 * 179.97438 * 10 9 7 12 12 C 1.35753 * 120.13055 * 359.97438 * 11 10 9 13 13 N 1.35433 * 121.23106 * 0.02562 * 12 11 10 14 14 C 1.46502 * 119.47264 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46840 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47107 * 120.00157 * 14 13 12 17 17 C 1.53006 * 109.47008 * 240.00138 * 14 13 12 18 18 C 1.34655 * 121.05645 * 359.73568 * 13 12 11 19 19 O 1.21890 * 120.10282 * 180.28525 * 18 13 12 20 20 N 1.46497 * 109.47083 * 65.00178 * 3 2 1 21 21 C 1.36940 * 119.99716 * 274.99656 * 20 3 2 22 22 H 1.08000 * 119.99990 * 0.02562 * 21 20 3 23 23 C 1.38805 * 120.00220 * 179.72533 * 21 20 3 24 24 N 1.31620 * 119.99896 * 0.27594 * 23 21 20 25 25 Si 1.86799 * 120.00232 * 180.27589 * 23 21 20 26 26 H 1.48495 * 109.47074 * 60.00227 * 25 23 21 27 27 H 1.48501 * 109.47063 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47152 * 299.99919 * 25 23 21 29 29 H 1.09007 * 109.46442 * 60.00060 * 1 2 3 30 30 H 1.08996 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47161 * 300.00339 * 1 2 3 32 32 H 1.09001 * 109.47161 * 239.99661 * 2 1 3 33 33 H 1.09002 * 109.46754 * 119.99617 * 2 1 3 34 34 H 1.09000 * 109.47796 * 305.00096 * 5 3 2 35 35 H 1.09007 * 109.47095 * 65.00559 * 5 3 2 36 36 H 0.97003 * 120.00082 * 0.02562 * 6 5 3 37 37 H 1.08006 * 120.52250 * 359.97438 * 10 9 7 38 38 H 1.08005 * 119.93070 * 179.97438 * 11 10 9 39 39 H 1.07999 * 119.38314 * 180.02562 * 12 11 10 40 40 H 1.08995 * 109.47215 * 60.00156 * 15 14 13 41 41 H 1.08997 * 109.46733 * 180.02562 * 15 14 13 42 42 H 1.09003 * 109.46896 * 299.99623 * 15 14 13 43 43 H 1.08994 * 109.47151 * 60.00081 * 16 14 13 44 44 H 1.09001 * 109.46796 * 180.02562 * 16 14 13 45 45 H 1.09001 * 109.47128 * 299.99577 * 16 14 13 46 46 H 1.09004 * 109.46818 * 59.99989 * 17 14 13 47 47 H 1.09001 * 109.46968 * 179.97438 * 17 14 13 48 48 H 1.08994 * 109.47246 * 299.99916 * 17 14 13 49 49 H 0.97000 * 120.00863 * 94.99676 * 20 3 2 50 50 H 0.97000 * 120.00442 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1256 6 7 4.0631 2.8167 -0.0059 7 6 5.3857 3.0629 -0.0867 8 8 6.1728 2.1387 -0.1651 9 6 5.8775 4.4491 -0.0800 10 6 7.2284 4.7231 -0.2833 11 6 7.6577 6.0501 -0.2706 12 6 6.7663 7.0527 -0.0632 13 7 5.4519 6.7938 0.1352 14 6 4.5234 7.9055 0.3549 15 6 5.2916 9.2280 0.3103 16 6 3.4538 7.9005 -0.7391 17 6 3.8550 7.7492 1.7224 18 6 4.9837 5.5313 0.1280 19 8 3.7964 5.3185 0.3032 20 7 1.6525 2.0975 1.2518 21 6 0.4157 2.6735 1.3688 22 1 -0.2742 2.6446 0.5383 23 6 0.0463 3.2891 2.5567 24 7 0.8868 3.3240 3.5690 25 14 -1.6438 4.0682 2.7189 26 1 -2.6880 3.0329 2.5115 27 1 -1.7902 4.6550 4.0751 28 1 -1.7963 5.1364 1.6987 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.9955 0.8310 0.6660 35 1 3.8500 1.0376 -1.0960 36 1 3.4411 3.5482 0.1315 37 1 7.9322 3.9206 -0.4482 38 1 8.7014 6.2804 -0.4262 39 1 7.1118 8.0759 -0.0562 40 1 5.7674 9.3391 -0.6640 41 1 4.6009 10.0550 0.4742 42 1 6.0538 9.2318 1.0895 43 1 2.9065 6.9584 -0.7077 44 1 2.7633 8.7279 -0.5758 45 1 3.9299 8.0119 -1.7132 46 1 4.6171 7.7528 2.5017 47 1 3.1646 8.5766 1.8860 48 1 3.3077 6.8071 1.7537 49 1 2.2719 2.1232 1.9979 50 1 0.6289 3.7545 4.3991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267822739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:27 Heat of formation + Delta-G solvation = -48.127071 kcal Electronic energy + Delta-G solvation = -30748.996065 eV Core-core repulsion = 26776.288479 eV Total energy + Delta-G solvation = -3972.707586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.85698 -40.50329 -38.36039 -38.27294 -37.33210 -35.08287 -34.08789 -33.14909 -31.54618 -31.20427 -29.57549 -28.54160 -28.39354 -26.05999 -25.22928 -24.58790 -23.69406 -22.00983 -21.58167 -20.90556 -19.31190 -18.77828 -18.08875 -18.02807 -17.07525 -16.88859 -16.85437 -16.48662 -16.09446 -15.64042 -15.45859 -15.29709 -15.11644 -14.85552 -14.84313 -14.58162 -14.16745 -13.82938 -13.76104 -13.58181 -13.18163 -13.10222 -13.05926 -12.93999 -12.81591 -12.78307 -12.75211 -12.59855 -12.40860 -12.17910 -12.15705 -12.12762 -11.90716 -11.66894 -11.35519 -11.10944 -11.03865 -10.87385 -10.66180 -9.92483 -9.00664 -8.96868 -7.86174 -5.13394 -0.51605 0.87005 1.43988 1.47289 1.47786 1.52525 1.78149 2.49988 2.59104 2.76515 3.41690 3.46603 3.67986 3.78098 3.85837 3.87607 3.89606 3.94697 3.98912 4.02183 4.27588 4.35935 4.44609 4.53329 4.54266 4.59386 4.61685 4.69838 4.71683 4.82336 4.83978 4.85906 4.95963 5.04784 5.05103 5.11516 5.17890 5.19721 5.26289 5.29387 5.31357 5.48393 5.56384 5.57821 5.67595 5.71879 6.04234 6.32240 6.70494 7.01742 7.39015 7.40432 8.10987 8.37215 9.37272 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.004568 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.952734 B = 6128.392007 C = 8244.598502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.166 3.834 4 H 0.046 0.954 5 C 0.118 3.882 6 N -0.711 5.711 7 C 0.561 3.439 8 O -0.599 6.599 9 C -0.329 4.329 10 C 0.074 3.926 11 C -0.241 4.241 12 C 0.172 3.828 13 N -0.479 5.479 14 C 0.143 3.857 15 C -0.157 4.157 16 C -0.163 4.163 17 C -0.165 4.165 18 C 0.514 3.486 19 O -0.560 6.560 20 N -0.724 5.724 21 C -0.216 4.216 22 H 0.076 0.924 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.963 3.037 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.283 1.283 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.418 0.582 37 H 0.151 0.849 38 H 0.201 0.799 39 H 0.226 0.774 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.088 0.912 48 H 0.038 0.962 49 H 0.369 0.631 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.828 15.273 -11.084 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.057 3.943 4 H 0.064 0.936 5 C -0.007 4.007 6 N -0.371 5.371 7 C 0.351 3.649 8 O -0.485 6.485 9 C -0.336 4.336 10 C 0.050 3.950 11 C -0.262 4.262 12 C 0.042 3.958 13 N -0.186 5.186 14 C 0.061 3.939 15 C -0.214 4.214 16 C -0.221 4.221 17 C -0.223 4.223 18 C 0.317 3.683 19 O -0.444 6.444 20 N -0.364 5.364 21 C -0.347 4.347 22 H 0.094 0.906 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.793 3.207 26 H -0.203 1.203 27 H -0.226 1.226 28 H -0.209 1.209 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.265 0.735 37 H 0.169 0.831 38 H 0.218 0.782 39 H 0.242 0.758 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.057 0.943 49 H 0.200 0.800 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.267 14.650 -11.074 23.882 hybrid contribution -1.371 0.005 0.984 1.688 sum 13.896 14.654 -10.090 22.576 Atomic orbital electron populations 1.21686 0.95713 1.00745 1.01702 1.21965 0.96841 0.96736 1.01135 1.20680 0.90837 0.93547 0.89243 0.93551 1.21591 0.94660 0.83465 1.01011 1.46732 1.08160 1.11355 1.70809 1.18054 0.82401 0.88554 0.75883 1.90665 1.56420 1.46320 1.55046 1.20895 0.96732 0.92269 1.23734 1.22297 0.92394 0.99394 0.80888 1.21182 1.02975 0.89438 1.12648 1.23347 0.81027 1.04325 0.87141 1.45822 1.09590 1.07975 1.55184 1.21239 0.90166 0.86265 0.96188 1.22341 1.01619 0.92539 1.04864 1.22203 0.98761 1.03433 0.97672 1.22202 1.01448 1.03245 0.95364 1.17145 0.88596 0.83158 0.79388 1.90715 1.17725 1.82679 1.53275 1.42481 1.15766 1.66143 1.12040 1.19428 0.92079 1.25898 0.97329 0.90640 1.25420 1.01354 1.03378 0.96548 1.69844 1.36885 1.51156 1.04124 0.85357 0.80789 0.78521 0.76019 1.20337 1.22557 1.20924 0.93378 0.92354 0.93367 0.90461 0.93438 0.93392 0.90451 0.73464 0.83122 0.78170 0.75806 0.88633 0.88551 0.89260 0.93814 0.89236 0.90954 0.91913 0.89298 0.94316 0.80000 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 9.18 71.98 0.66 -4.70 16 2 C -0.13 -4.79 5.61 30.60 0.17 -4.62 16 3 C 0.17 7.26 2.59 44.99 0.12 7.38 16 4 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 4.97 5.24 86.38 0.45 5.42 16 6 N -0.71 -32.13 5.30 -466.70 -2.47 -34.61 16 7 C 0.56 24.05 7.74 86.56 0.67 24.72 16 8 O -0.60 -27.24 16.41 -4.19 -0.07 -27.31 16 9 C -0.33 -11.30 5.92 -19.79 -0.12 -11.42 16 10 C 0.07 1.71 9.70 22.83 0.22 1.93 16 11 C -0.24 -2.90 9.99 21.99 0.22 -2.68 16 12 C 0.17 1.96 9.58 83.56 0.80 2.76 16 13 N -0.48 -10.54 2.53 -605.53 -1.53 -12.07 16 14 C 0.14 2.76 1.02 3.61 0.00 2.76 16 15 C -0.16 -1.06 7.09 71.98 0.51 -0.55 16 16 C -0.16 -3.63 8.39 71.98 0.60 -3.03 16 17 C -0.16 -4.31 8.40 71.98 0.60 -3.70 16 18 C 0.51 17.60 6.84 85.16 0.58 18.18 16 19 O -0.56 -24.51 9.83 -4.96 -0.05 -24.56 16 20 N -0.72 -38.85 4.51 -322.95 -1.46 -40.31 16 21 C -0.22 -12.34 7.75 84.03 0.65 -11.69 16 22 H 0.08 4.16 7.32 -2.91 -0.02 4.14 16 23 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 24 N -0.97 -62.33 13.06 21.65 0.28 -62.04 16 25 Si 0.96 48.34 29.55 68.60 2.03 50.36 16 26 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 27 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 28 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 2.19 5.99 -2.39 -0.01 2.18 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 36 H 0.42 20.58 4.74 -92.77 -0.44 20.14 16 37 H 0.15 3.27 7.71 -2.91 -0.02 3.24 16 38 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 39 H 0.23 0.02 5.55 -2.91 -0.02 0.01 16 40 H 0.09 0.19 7.41 -2.39 -0.02 0.18 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 0.31 7.41 -2.39 -0.02 0.29 16 43 H 0.04 1.43 6.10 -2.39 -0.01 1.42 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 47 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.04 1.49 6.14 -2.39 -0.01 1.47 16 49 H 0.37 22.04 7.80 -92.71 -0.72 21.32 16 50 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -85.87 393.19 3.14 -82.73 By element: Atomic # 1 Polarization: 51.29 SS G_CDS: -0.21 Total: 51.08 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.62 Total: 16.73 kcal Atomic # 7 Polarization: -143.85 SS G_CDS: -5.18 Total: -149.02 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.12 Total: -51.87 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.36 kcal Total: -85.87 3.14 -82.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267822739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.599 kcal (2) G-P(sol) polarization free energy of solvation -85.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds