Wall clock time and date at job start Tue Mar 31 2020 19:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00167 * 2 1 4 4 N 1.46497 * 109.47556 * 124.99729 * 3 2 1 5 5 C 1.34775 * 120.00512 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99645 * 5.12043 * 5 4 3 7 7 N 1.34771 * 120.00244 * 185.11684 * 5 4 3 8 8 C 1.47141 * 120.65461 * 5.26947 * 7 5 4 9 9 C 1.53206 * 108.64929 * 232.16983 * 8 7 5 10 10 C 1.53034 * 109.47361 * 304.73794 * 9 8 7 11 11 C 1.53204 * 109.48030 * 61.92958 * 10 9 8 12 12 C 1.45963 * 120.65319 * 185.29425 * 7 5 4 13 13 C 1.53823 * 110.76289 * 5.30680 * 12 7 5 14 14 C 1.51459 * 104.09501 * 265.49117 * 13 12 7 15 15 O 1.21275 * 124.94926 * 164.63947 * 14 13 12 16 16 N 1.34529 * 110.10778 * 344.79578 * 14 13 12 17 17 C 1.46496 * 124.35463 * 179.46142 * 16 14 13 18 18 C 1.53005 * 109.46990 * 269.70051 * 17 16 14 19 19 C 1.50697 * 109.47498 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99562 * 359.97438 * 19 18 17 21 21 C 1.37866 * 120.00201 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00312 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00213 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47475 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47202 * 299.99783 * 23 21 19 26 26 H 1.48504 * 109.47196 * 59.99590 * 23 21 19 27 27 C 1.46949 * 111.29244 * 359.19179 * 16 14 13 28 28 H 1.08006 * 119.99819 * 180.02562 * 1 2 3 29 29 H 1.07994 * 119.99997 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00033 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47005 * 4.99970 * 3 2 1 32 32 H 1.08997 * 109.46844 * 244.99837 * 3 2 1 33 33 H 0.97005 * 119.99309 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.60965 * 351.91782 * 8 7 5 35 35 H 1.08997 * 109.60712 * 112.42160 * 8 7 5 36 36 H 1.08998 * 109.47379 * 64.74505 * 9 8 7 37 37 H 1.09000 * 109.46799 * 184.73742 * 9 8 7 38 38 H 1.08997 * 109.47319 * 181.93332 * 10 9 8 39 39 H 1.09005 * 109.47348 * 301.92656 * 10 9 8 40 40 H 1.09000 * 109.48952 * 180.16075 * 11 10 9 41 41 H 1.08996 * 109.48945 * 60.09109 * 11 10 9 42 42 H 1.09004 * 110.51156 * 24.34856 * 13 12 7 43 43 H 1.08999 * 110.51399 * 146.93004 * 13 12 7 44 44 H 1.08995 * 109.47518 * 149.69908 * 17 16 14 45 45 H 1.09002 * 109.47184 * 29.69588 * 17 16 14 46 46 H 1.09000 * 109.47510 * 59.99383 * 18 17 16 47 47 H 1.09002 * 109.46779 * 299.99784 * 18 17 16 48 48 H 0.97003 * 119.99821 * 0.02562 * 22 21 19 49 49 H 1.08996 * 110.27613 * 135.55125 * 27 16 14 50 50 H 1.09010 * 110.27665 * 257.62986 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 3.7790 2.4086 1.3329 6 8 3.6504 3.3944 0.6328 7 7 4.7068 2.3927 2.3103 8 6 4.9542 1.1696 3.0899 9 6 4.8651 1.5123 4.5805 10 6 5.8338 2.6530 4.9005 11 6 5.4341 3.9006 4.1062 12 6 5.4855 3.5886 2.6167 13 6 4.9911 4.7879 1.7902 14 6 5.8983 4.7993 0.5774 15 8 5.6842 5.4160 -0.4446 16 7 6.9746 4.0229 0.7978 17 6 8.0477 3.8020 -0.1748 18 6 7.7121 2.5829 -1.0363 19 6 8.8155 2.3559 -2.0373 20 1 9.6705 3.0156 -2.0573 21 6 8.7337 1.3064 -2.9274 22 7 7.6928 0.5028 -2.9028 23 14 10.1018 1.0246 -4.1677 24 1 9.7766 -0.1593 -5.0031 25 1 10.2370 2.2217 -5.0361 26 1 11.3798 0.7872 -3.4496 27 6 6.9388 3.4299 2.1418 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 3.0445 0.5747 1.7356 34 1 4.2034 0.4194 2.8416 35 1 5.9483 0.7852 2.8617 36 1 3.8480 1.8206 4.8223 37 1 5.1289 0.6351 5.1713 38 1 5.7955 2.8738 5.9672 39 1 6.8466 2.3572 4.6269 40 1 6.1256 4.7124 4.3318 41 1 4.4220 4.1977 4.3808 42 1 3.9523 4.6444 1.4925 43 1 5.1009 5.7130 2.3560 44 1 8.9856 3.6273 0.3523 45 1 8.1471 4.6808 -0.8120 46 1 6.7741 2.7575 -1.5635 47 1 7.6126 1.7041 -0.3992 48 1 6.9825 0.6488 -2.2585 49 1 7.2084 2.3748 2.0965 50 1 7.6147 3.9650 2.8090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273633482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:21 Heat of formation + Delta-G solvation = -11.358989 kcal Electronic energy + Delta-G solvation = -31284.431617 eV Core-core repulsion = 27313.318415 eV Total energy + Delta-G solvation = -3971.113202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53682 -39.12204 -37.79920 -35.97758 -35.37723 -34.11869 -33.41657 -32.51704 -31.92533 -29.63077 -27.89253 -26.92759 -25.90463 -24.63162 -23.85045 -22.09601 -21.52932 -21.23369 -20.51885 -19.38677 -18.40565 -17.86645 -16.83518 -16.60271 -16.16758 -15.80136 -15.53566 -15.14498 -14.86011 -14.65571 -14.48943 -14.21840 -13.75839 -13.71306 -13.59501 -13.47857 -13.16093 -12.91926 -12.73765 -12.60648 -12.51332 -12.33196 -12.02606 -11.74376 -11.51196 -11.41348 -11.35313 -11.16907 -10.91343 -10.85897 -10.77650 -10.26371 -10.03376 -10.00831 -9.94428 -9.27784 -9.00176 -8.76315 -8.63047 -8.53552 -8.27609 -7.86683 -6.32429 -4.00737 1.83848 2.62153 3.11839 3.44825 3.46788 3.50045 3.67542 3.72763 3.77416 4.36199 4.43832 4.52913 4.59676 4.63327 4.64799 4.78408 4.91282 4.91671 5.12308 5.19600 5.31969 5.36041 5.44952 5.46249 5.54239 5.58186 5.64821 5.66759 5.68230 5.71926 5.74345 5.80421 5.86929 6.00224 6.08169 6.18263 6.32029 6.37116 6.47090 6.53581 6.77381 6.80492 6.89218 7.11889 7.41942 7.61849 7.89258 7.92773 8.24055 8.49887 8.63775 8.90766 8.98090 9.72262 11.08258 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.004459 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.157000 B = 6277.323356 C = 7835.498184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.170 4.170 3 C 0.162 3.838 4 N -0.742 5.742 5 C 0.709 3.291 6 O -0.559 6.559 7 N -0.613 5.613 8 C 0.109 3.891 9 C -0.133 4.133 10 C -0.121 4.121 11 C -0.114 4.114 12 C 0.180 3.820 13 C -0.192 4.192 14 C 0.534 3.466 15 O -0.533 6.533 16 N -0.620 5.620 17 C 0.138 3.862 18 C 0.004 3.996 19 C -0.601 4.601 20 H 0.049 0.951 21 C 0.016 3.984 22 N -0.911 5.911 23 Si 1.070 2.930 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.288 1.288 27 C 0.098 3.902 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.393 0.607 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.174 0.826 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.011 0.989 47 H 0.002 0.998 48 H 0.267 0.733 49 H 0.076 0.924 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 -1.300 20.558 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 C 0.038 3.962 4 N -0.400 5.400 5 C 0.412 3.588 6 O -0.438 6.438 7 N -0.349 5.349 8 C -0.014 4.014 9 C -0.172 4.172 10 C -0.159 4.159 11 C -0.152 4.152 12 C 0.094 3.906 13 C -0.231 4.231 14 C 0.322 3.678 15 O -0.410 6.410 16 N -0.355 5.355 17 C 0.017 3.983 18 C -0.034 4.034 19 C -0.640 4.640 20 H 0.068 0.932 21 C -0.188 4.188 22 N -0.547 5.547 23 Si 0.898 3.102 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.215 1.215 27 C -0.027 4.027 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.189 0.811 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.029 0.971 47 H 0.021 0.979 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.472 -1.254 18.155 20.996 hybrid contribution -0.250 0.294 1.596 1.642 sum -10.722 -0.960 19.751 22.494 Atomic orbital electron populations 1.23935 0.95703 1.02250 0.98945 1.23044 0.96192 0.98302 1.01294 1.20286 0.91270 0.95154 0.89444 1.45349 1.42767 1.19659 1.32204 1.15930 0.78926 0.83491 0.80485 1.90726 1.73404 1.30910 1.48731 1.46821 1.39211 1.12060 1.36813 1.21721 1.02266 0.86321 0.91055 1.21910 1.00548 0.99301 0.95400 1.21561 0.99602 0.94730 0.99986 1.21737 1.02953 0.98403 0.92135 1.20507 0.90353 0.84896 0.94864 1.23731 1.08128 0.96116 0.95158 1.20516 0.81048 0.77940 0.88270 1.90646 1.74725 1.45567 1.30015 1.48549 1.23738 1.48315 1.14854 1.21533 0.86844 1.00527 0.89351 1.19467 0.97587 0.91922 0.94420 1.21942 1.06548 1.16114 1.19380 0.93226 1.25845 1.01042 0.92969 0.98902 1.70763 1.08859 1.38217 1.36884 0.83535 0.74500 0.76297 0.75831 1.20783 1.21361 1.21463 1.22322 0.95847 0.99675 0.84838 0.87994 0.88208 0.86682 0.91073 0.90306 0.77047 0.90378 0.90755 0.91378 0.90520 0.91274 0.91253 0.90046 0.90786 0.81062 0.89683 0.91962 0.91176 0.97059 0.97939 0.92220 0.90563 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 14.32 29.01 0.42 -0.97 16 2 C -0.17 -1.63 9.63 -36.03 -0.35 -1.97 16 3 C 0.16 2.03 6.12 -5.20 -0.03 2.00 16 4 N -0.74 -9.26 5.44 -66.42 -0.36 -9.63 16 5 C 0.71 11.09 8.14 -86.92 -0.71 10.39 16 6 O -0.56 -11.11 11.17 5.29 0.06 -11.06 16 7 N -0.61 -7.86 2.69 -163.75 -0.44 -8.30 16 8 C 0.11 0.99 6.18 -3.59 -0.02 0.97 16 9 C -0.13 -0.87 6.05 -26.61 -0.16 -1.04 16 10 C -0.12 -0.83 5.79 -26.61 -0.15 -0.99 16 11 C -0.11 -0.99 4.69 -27.00 -0.13 -1.11 16 12 C 0.18 2.33 0.87 -131.69 -0.11 2.22 16 13 C -0.19 -3.14 5.37 -27.08 -0.15 -3.29 16 14 C 0.53 11.68 6.83 -10.72 -0.07 11.60 16 15 O -0.53 -14.23 17.59 5.56 0.10 -14.13 16 16 N -0.62 -12.64 2.94 -172.64 -0.51 -13.15 16 17 C 0.14 3.23 5.88 -4.04 -0.02 3.21 16 18 C 0.00 0.11 4.61 -27.88 -0.13 -0.02 16 19 C -0.60 -18.09 9.11 -34.45 -0.31 -18.40 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 21 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 22 N -0.91 -29.16 13.65 55.43 0.76 -28.40 16 23 Si 1.07 26.26 29.90 -169.99 -5.08 21.18 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 27 C 0.10 1.47 5.92 -3.43 -0.02 1.45 16 28 H 0.10 0.67 8.06 -52.48 -0.42 0.25 16 29 H 0.10 0.77 7.84 -52.49 -0.41 0.36 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.39 3.73 5.96 -40.82 -0.24 3.49 16 34 H 0.08 0.58 5.59 -51.93 -0.29 0.29 16 35 H 0.07 0.73 7.41 -51.93 -0.38 0.35 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.50 7.65 -51.93 -0.40 0.10 16 40 H 0.08 0.63 7.94 -51.93 -0.41 0.21 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.17 3.13 4.52 -57.65 -0.26 2.87 16 43 H 0.09 1.16 7.87 -51.93 -0.41 0.76 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.07 1.75 7.92 -51.93 -0.41 1.34 16 46 H 0.01 0.36 8.01 -51.93 -0.42 -0.06 16 47 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 48 H 0.27 8.69 7.22 -40.82 -0.29 8.39 16 49 H 0.08 1.17 7.13 -51.93 -0.37 0.80 16 50 H 0.07 0.88 7.73 -51.92 -0.40 0.48 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -39.27 390.96 -9.75 -49.02 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.11 Total: 4.13 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.05 Total: 4.45 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.55 Total: -59.47 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.16 Total: -25.19 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.08 Total: 21.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.27 -9.75 -49.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273633482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.656 kcal (2) G-P(sol) polarization free energy of solvation -39.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds