Wall clock time and date at job start Tue Mar 31 2020 19:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00167 * 2 1 4 4 N 1.46497 * 109.47556 * 124.99729 * 3 2 1 5 5 C 1.34775 * 120.00512 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99645 * 5.12043 * 5 4 3 7 7 N 1.34771 * 120.00244 * 185.11684 * 5 4 3 8 8 C 1.47141 * 120.65461 * 5.26947 * 7 5 4 9 9 C 1.53206 * 108.64929 * 232.16983 * 8 7 5 10 10 C 1.53034 * 109.47361 * 304.73794 * 9 8 7 11 11 C 1.53204 * 109.48030 * 61.92958 * 10 9 8 12 12 C 1.45963 * 120.65319 * 185.29425 * 7 5 4 13 13 C 1.53823 * 110.76289 * 5.30680 * 12 7 5 14 14 C 1.51459 * 104.09501 * 265.49117 * 13 12 7 15 15 O 1.21275 * 124.94926 * 164.63947 * 14 13 12 16 16 N 1.34529 * 110.10778 * 344.79578 * 14 13 12 17 17 C 1.46496 * 124.35463 * 179.46142 * 16 14 13 18 18 C 1.53005 * 109.46990 * 269.70051 * 17 16 14 19 19 C 1.50697 * 109.47498 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99562 * 359.97438 * 19 18 17 21 21 C 1.37866 * 120.00201 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00312 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00213 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47475 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47202 * 299.99783 * 23 21 19 26 26 H 1.48504 * 109.47196 * 59.99590 * 23 21 19 27 27 C 1.46949 * 111.29244 * 359.19179 * 16 14 13 28 28 H 1.08006 * 119.99819 * 180.02562 * 1 2 3 29 29 H 1.07994 * 119.99997 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00033 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47005 * 4.99970 * 3 2 1 32 32 H 1.08997 * 109.46844 * 244.99837 * 3 2 1 33 33 H 0.97005 * 119.99309 * 359.97438 * 4 3 2 34 34 H 1.08999 * 109.60965 * 351.91782 * 8 7 5 35 35 H 1.08997 * 109.60712 * 112.42160 * 8 7 5 36 36 H 1.08998 * 109.47379 * 64.74505 * 9 8 7 37 37 H 1.09000 * 109.46799 * 184.73742 * 9 8 7 38 38 H 1.08997 * 109.47319 * 181.93332 * 10 9 8 39 39 H 1.09005 * 109.47348 * 301.92656 * 10 9 8 40 40 H 1.09000 * 109.48952 * 180.16075 * 11 10 9 41 41 H 1.08996 * 109.48945 * 60.09109 * 11 10 9 42 42 H 1.09004 * 110.51156 * 24.34856 * 13 12 7 43 43 H 1.08999 * 110.51399 * 146.93004 * 13 12 7 44 44 H 1.08995 * 109.47518 * 149.69908 * 17 16 14 45 45 H 1.09002 * 109.47184 * 29.69588 * 17 16 14 46 46 H 1.09000 * 109.47510 * 59.99383 * 18 17 16 47 47 H 1.09002 * 109.46779 * 299.99784 * 18 17 16 48 48 H 0.97003 * 119.99821 * 0.02562 * 22 21 19 49 49 H 1.08996 * 110.27613 * 135.55125 * 27 16 14 50 50 H 1.09010 * 110.27665 * 257.62986 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 3.7790 2.4086 1.3329 6 8 3.6504 3.3944 0.6328 7 7 4.7068 2.3927 2.3103 8 6 4.9542 1.1696 3.0899 9 6 4.8651 1.5123 4.5805 10 6 5.8338 2.6530 4.9005 11 6 5.4341 3.9006 4.1062 12 6 5.4855 3.5886 2.6167 13 6 4.9911 4.7879 1.7902 14 6 5.8983 4.7993 0.5774 15 8 5.6842 5.4160 -0.4446 16 7 6.9746 4.0229 0.7978 17 6 8.0477 3.8020 -0.1748 18 6 7.7121 2.5829 -1.0363 19 6 8.8155 2.3559 -2.0373 20 1 9.6705 3.0156 -2.0573 21 6 8.7337 1.3064 -2.9274 22 7 7.6928 0.5028 -2.9028 23 14 10.1018 1.0246 -4.1677 24 1 9.7766 -0.1593 -5.0031 25 1 10.2370 2.2217 -5.0361 26 1 11.3798 0.7872 -3.4496 27 6 6.9388 3.4299 2.1418 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 3.0445 0.5747 1.7356 34 1 4.2034 0.4194 2.8416 35 1 5.9483 0.7852 2.8617 36 1 3.8480 1.8206 4.8223 37 1 5.1289 0.6351 5.1713 38 1 5.7955 2.8738 5.9672 39 1 6.8466 2.3572 4.6269 40 1 6.1256 4.7124 4.3318 41 1 4.4220 4.1977 4.3808 42 1 3.9523 4.6444 1.4925 43 1 5.1009 5.7130 2.3560 44 1 8.9856 3.6273 0.3523 45 1 8.1471 4.6808 -0.8120 46 1 6.7741 2.7575 -1.5635 47 1 7.6126 1.7041 -0.3992 48 1 6.9825 0.6488 -2.2585 49 1 7.2084 2.3748 2.0965 50 1 7.6147 3.9650 2.8090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273633482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:20 Heat of formation + Delta-G solvation = -39.728468 kcal Electronic energy + Delta-G solvation = -31285.661810 eV Core-core repulsion = 27313.318415 eV Total energy + Delta-G solvation = -3972.343395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.73261 -40.57096 -38.96104 -37.12174 -37.05095 -35.92668 -34.62370 -33.81355 -32.99890 -31.29565 -29.26251 -28.11999 -27.11915 -26.19472 -25.11999 -23.71945 -22.91041 -22.26353 -21.46120 -20.67692 -19.67136 -19.07642 -18.90948 -17.86155 -17.56894 -17.00887 -16.87336 -16.53205 -15.96172 -15.69623 -15.52341 -15.47965 -15.36844 -15.18629 -14.83588 -14.75836 -14.42064 -14.35850 -14.15617 -13.95728 -13.86623 -13.65387 -13.38224 -13.13463 -12.92322 -12.75433 -12.42904 -12.25562 -12.11667 -12.09290 -11.94802 -11.93919 -11.61095 -11.51389 -11.01274 -10.85019 -10.66517 -10.62741 -10.28895 -10.06069 -9.72437 -9.49059 -8.80548 -6.51649 1.03150 1.47386 1.57596 1.58115 1.69609 1.77176 2.04508 2.13636 2.52692 2.81794 3.06834 3.29768 3.41850 3.67403 3.77569 3.88503 3.97813 4.06710 4.08879 4.18921 4.23064 4.29969 4.37468 4.47092 4.49240 4.54505 4.55776 4.60744 4.65674 4.69793 4.90491 4.93319 4.95926 5.00757 5.04619 5.08421 5.14849 5.17594 5.26390 5.41345 5.47535 5.55246 5.58129 5.67767 5.74660 5.82881 5.89112 6.04031 6.26494 6.40518 6.84300 7.24557 7.33941 7.47795 8.58767 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.004459 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.157000 B = 6277.323356 C = 7835.498184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.186 4.186 3 C 0.165 3.835 4 N -0.730 5.730 5 C 0.694 3.306 6 O -0.611 6.611 7 N -0.612 5.612 8 C 0.100 3.900 9 C -0.124 4.124 10 C -0.119 4.119 11 C -0.105 4.105 12 C 0.187 3.813 13 C -0.182 4.182 14 C 0.517 3.483 15 O -0.599 6.599 16 N -0.624 5.624 17 C 0.150 3.850 18 C 0.020 3.980 19 C -0.622 4.622 20 H 0.059 0.941 21 C -0.038 4.038 22 N -0.930 5.930 23 Si 1.124 2.876 24 H -0.281 1.281 25 H -0.273 1.273 26 H -0.257 1.257 27 C 0.091 3.909 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.409 0.591 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.157 0.843 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.047 0.953 46 H -0.046 1.046 47 H -0.009 1.009 48 H 0.248 0.752 49 H 0.072 0.928 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -2.486 23.932 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.204 4.204 3 C 0.041 3.959 4 N -0.388 5.388 5 C 0.396 3.604 6 O -0.493 6.493 7 N -0.347 5.347 8 C -0.021 4.021 9 C -0.162 4.162 10 C -0.157 4.157 11 C -0.144 4.144 12 C 0.101 3.899 13 C -0.221 4.221 14 C 0.307 3.693 15 O -0.480 6.480 16 N -0.357 5.357 17 C 0.028 3.972 18 C -0.018 4.018 19 C -0.660 4.660 20 H 0.078 0.922 21 C -0.235 4.235 22 N -0.567 5.567 23 Si 0.943 3.057 24 H -0.206 1.206 25 H -0.199 1.199 26 H -0.181 1.181 27 C -0.032 4.032 28 H 0.145 0.855 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.248 0.752 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.173 0.827 43 H 0.134 0.866 44 H 0.112 0.888 45 H 0.065 0.935 46 H -0.028 1.028 47 H 0.009 0.991 48 H 0.057 0.943 49 H 0.091 0.909 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.541 -2.495 21.650 23.790 hybrid contribution -0.618 0.639 0.521 1.030 sum -10.159 -1.856 22.171 24.458 Atomic orbital electron populations 1.24176 0.95003 1.03577 0.95709 1.22865 0.96658 0.96746 1.04157 1.20189 0.90849 0.97171 0.87696 1.45243 1.42036 1.19385 1.32166 1.16341 0.79814 0.83478 0.80734 1.90723 1.74914 1.32961 1.50729 1.46982 1.38080 1.13431 1.36251 1.22042 1.02264 0.85068 0.92744 1.21885 1.01026 1.00371 0.92939 1.21598 0.99451 0.93544 1.01072 1.21761 1.04256 1.00137 0.88201 1.20688 0.88438 0.83484 0.97329 1.23601 1.05758 0.99370 0.93385 1.21605 0.81703 0.76916 0.89035 1.90584 1.76127 1.48336 1.32989 1.48647 1.22566 1.48100 1.16387 1.21156 0.89130 0.97144 0.89808 1.19257 0.94613 0.93561 0.94373 1.22371 1.07129 1.16459 1.20022 0.92228 1.27677 1.02606 0.92439 1.00809 1.70922 1.09423 1.39403 1.36963 0.82886 0.72387 0.76722 0.73673 1.20591 1.19853 1.18125 1.22772 0.98356 0.99655 0.82382 0.85508 0.87890 0.85850 0.91507 0.94662 0.75185 0.89079 0.91508 0.90828 0.88129 0.88690 0.91234 0.88127 0.89904 0.82662 0.86557 0.88848 0.93466 1.02758 0.99103 0.94327 0.90919 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 14.32 67.78 0.97 -1.23 16 2 C -0.19 -3.60 9.63 25.64 0.25 -3.35 16 3 C 0.16 4.53 6.12 85.63 0.52 5.06 16 4 N -0.73 -19.22 5.44 -482.32 -2.63 -21.84 16 5 C 0.69 22.89 8.14 179.06 1.46 24.35 16 6 O -0.61 -26.36 11.17 -3.99 -0.04 -26.41 16 7 N -0.61 -15.50 2.69 -790.26 -2.13 -17.63 16 8 C 0.10 1.65 6.18 86.33 0.53 2.18 16 9 C -0.12 -1.15 6.05 30.67 0.19 -0.96 16 10 C -0.12 -1.08 5.79 30.67 0.18 -0.91 16 11 C -0.11 -1.42 4.69 30.42 0.14 -1.27 16 12 C 0.19 4.59 0.87 3.98 0.00 4.59 16 13 C -0.18 -6.03 5.37 30.37 0.16 -5.87 16 14 C 0.52 23.83 6.83 87.94 0.60 24.43 16 15 O -0.60 -34.61 17.59 -3.01 -0.05 -34.66 16 16 N -0.62 -26.19 2.94 -818.65 -2.41 -28.60 16 17 C 0.15 7.27 5.88 86.38 0.51 7.78 16 18 C 0.02 1.19 4.61 29.85 0.14 1.32 16 19 C -0.62 -38.41 9.11 25.60 0.23 -38.17 16 20 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 21 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 22 N -0.93 -61.66 13.65 21.44 0.29 -61.37 16 23 Si 1.12 52.51 29.90 68.60 2.05 54.56 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 C 0.09 2.60 5.92 86.53 0.51 3.12 16 28 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.10 1.49 7.84 -2.91 -0.02 1.46 16 30 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.07 1.85 7.79 -2.39 -0.02 1.83 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.41 7.76 5.96 -92.70 -0.55 7.21 16 34 H 0.09 1.21 5.59 -2.39 -0.01 1.20 16 35 H 0.07 1.22 7.41 -2.39 -0.02 1.20 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 0.68 7.65 -2.38 -0.02 0.66 16 40 H 0.10 1.04 7.94 -2.39 -0.02 1.02 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.16 5.98 4.52 -92.99 -0.42 5.56 16 43 H 0.12 3.04 7.87 -2.39 -0.02 3.02 16 44 H 0.09 3.93 8.14 -2.39 -0.02 3.91 16 45 H 0.05 2.48 7.92 -2.39 -0.02 2.46 16 46 H -0.05 -3.23 8.01 -2.39 -0.02 -3.25 16 47 H -0.01 -0.56 8.01 -2.39 -0.02 -0.58 16 48 H 0.25 17.07 7.22 -92.71 -0.67 16.40 16 49 H 0.07 2.15 7.13 -2.39 -0.02 2.13 16 50 H 0.11 2.35 7.73 -2.38 -0.02 2.33 16 Total: -1.00 -95.05 390.96 2.02 -93.03 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.07 Total: 23.75 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.86 Total: 19.17 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -6.87 Total: -129.44 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -0.10 Total: -61.07 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 2.05 Total: 54.56 kcal Total: -95.05 2.02 -93.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273633482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.302 kcal (2) G-P(sol) polarization free energy of solvation -95.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds