Wall clock time and date at job start Tue Mar 31 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47271 * 2 1 4 4 H 1.09007 * 109.46829 * 54.99953 * 3 2 1 5 5 C 1.52998 * 109.47131 * 295.00236 * 3 2 1 6 6 C 1.52996 * 109.47158 * 175.00180 * 3 2 1 7 7 N 1.46905 * 109.47138 * 295.20593 * 6 3 2 8 8 C 1.46980 * 110.99873 * 164.47092 * 7 6 3 9 9 C 1.53717 * 108.14104 * 123.94562 * 8 7 6 10 10 H 1.09000 * 113.18007 * 251.78239 * 9 8 7 11 11 C 1.51777 * 108.83206 * 124.91370 * 9 8 7 12 12 C 1.47599 * 125.81038 * 86.04484 * 11 9 8 13 13 O 1.21560 * 119.99689 * 359.97438 * 12 11 9 14 14 N 1.34769 * 120.00523 * 179.97438 * 12 11 9 15 15 C 1.47069 * 136.05391 * 359.63108 * 14 12 11 16 16 C 1.53238 * 88.08146 * 207.20180 * 15 14 12 17 17 C 1.50697 * 114.32493 * 220.46722 * 16 15 14 18 18 H 1.08006 * 120.00279 * 93.75930 * 17 16 15 19 19 C 1.37877 * 120.00268 * 273.75730 * 17 16 15 20 20 N 1.31517 * 119.99860 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46913 * 89.99857 * 21 19 17 23 23 H 1.48499 * 109.47133 * 209.99723 * 21 19 17 24 24 H 1.48498 * 109.47070 * 329.99820 * 21 19 17 25 25 C 1.47069 * 136.06142 * 179.97438 * 14 12 11 26 26 N 1.28982 * 108.38525 * 266.03970 * 11 9 8 27 27 O 1.41408 * 112.87827 * 0.21030 * 26 11 9 28 28 C 1.46175 * 107.72913 * 341.77994 * 27 26 11 29 29 H 1.09005 * 113.64509 * 264.62151 * 28 27 26 30 30 C 1.47104 * 111.00157 * 286.18191 * 7 6 3 31 31 H 1.08995 * 109.47400 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47120 * 300.00197 * 1 2 3 33 33 H 1.09000 * 109.47255 * 59.99600 * 1 2 3 34 34 H 1.08998 * 109.47435 * 119.99895 * 2 1 3 35 35 H 1.08997 * 109.46889 * 240.00336 * 2 1 3 36 36 H 1.08994 * 109.47421 * 185.98780 * 5 3 2 37 37 H 1.09006 * 109.47216 * 305.98475 * 5 3 2 38 38 H 1.08996 * 109.47301 * 65.98403 * 5 3 2 39 39 H 1.09000 * 109.47163 * 55.20314 * 6 3 2 40 40 H 1.08999 * 109.47332 * 175.20720 * 6 3 2 41 41 H 1.09003 * 109.73962 * 243.62548 * 8 7 6 42 42 H 1.08996 * 109.73996 * 4.28291 * 8 7 6 43 43 H 1.09009 * 113.46914 * 321.93218 * 15 14 12 44 44 H 1.09001 * 113.46987 * 92.37220 * 15 14 12 45 45 H 1.09002 * 114.02010 * 87.71218 * 16 15 14 46 46 H 0.97007 * 119.99831 * 180.02562 * 20 19 17 47 47 H 1.08997 * 113.46509 * 267.62312 * 25 14 12 48 48 H 1.08997 * 113.46115 * 38.07195 * 25 14 12 49 49 H 1.09006 * 109.97971 * 338.62197 * 30 7 6 50 50 H 1.08994 * 109.98479 * 99.91215 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 7 3.9492 0.8917 1.4314 8 6 5.3747 0.5343 1.4531 9 6 6.0372 1.2793 2.6231 10 1 6.6902 2.0903 2.3006 11 6 6.7331 0.2686 3.5163 12 6 8.1037 -0.2473 3.3323 13 8 8.7780 0.1390 2.3975 14 7 8.6076 -1.1465 4.2005 15 6 8.1318 -1.8295 5.4130 16 6 9.5926 -1.9378 5.8629 17 6 9.9492 -3.2551 6.5021 18 1 10.3668 -4.0507 5.9028 19 6 9.7425 -3.4448 7.8520 20 7 10.0542 -4.5943 8.4099 21 14 9.0196 -2.0691 8.8886 22 1 7.5390 -2.1825 8.8985 23 1 9.5334 -2.1737 10.2779 24 1 9.4117 -0.7574 8.3132 25 6 9.8774 -1.8721 4.3559 26 7 5.9230 -0.0628 4.4637 27 8 4.6746 0.5953 4.3749 28 6 4.8444 1.7561 3.5029 29 1 5.0427 2.6826 4.0419 30 6 3.6733 1.8511 2.5118 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 2.0876 3.1171 -1.3544 37 1 1.9797 1.5294 -2.1517 38 1 0.5501 2.2205 -1.3474 39 1 3.9955 0.8340 -0.6681 40 1 3.9353 2.4659 0.0402 41 1 5.4825 -0.5413 1.5933 42 1 5.8432 0.8319 0.5150 43 1 7.5260 -1.1945 6.0595 44 1 7.6664 -2.7947 5.2132 45 1 9.9495 -1.0737 6.4235 46 1 9.9083 -4.7278 9.3596 47 1 9.8812 -2.8487 3.8719 48 1 10.7529 -1.2732 4.1052 49 1 3.6098 2.8609 2.1061 50 1 2.7404 1.5910 3.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278135342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:34 Heat of formation + Delta-G solvation = 31.385139 kcal Electronic energy + Delta-G solvation = -29508.338638 eV Core-core repulsion = 25539.078960 eV Total energy + Delta-G solvation = -3969.259678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29634 -39.69414 -38.24044 -37.39352 -35.86863 -33.38925 -32.66481 -31.43162 -29.93355 -29.74480 -28.78090 -26.27794 -25.89633 -25.19702 -23.73049 -23.17751 -21.79713 -21.56848 -20.05843 -19.95176 -18.53707 -17.48346 -17.12540 -16.64388 -16.54065 -15.61140 -15.37529 -15.27285 -15.14674 -14.83800 -14.50346 -14.31813 -13.94363 -13.71863 -13.70195 -13.44809 -13.04828 -12.87601 -12.61200 -12.46233 -12.39447 -12.36479 -12.13239 -12.00090 -11.87499 -11.82805 -11.76566 -11.52691 -11.09095 -10.94120 -10.83628 -10.79357 -10.78550 -10.60260 -10.06449 -10.01760 -9.80276 -9.59540 -9.28694 -8.69659 -8.69295 -8.26651 -6.22774 -4.26594 1.01616 2.61076 2.99520 3.19636 3.23621 3.30676 3.33070 3.50620 3.91754 3.98338 4.17298 4.26676 4.30222 4.40947 4.53668 4.64482 4.77339 4.89045 4.92584 4.97768 5.06082 5.12405 5.16530 5.21017 5.21819 5.29136 5.32198 5.42219 5.46984 5.51436 5.66816 5.67398 5.70819 5.73275 5.78692 5.83027 5.90969 5.96418 6.09081 6.16260 6.22211 6.30536 6.35543 6.41688 6.56204 6.65860 6.99650 7.10922 7.50337 7.99201 8.24500 8.34643 8.79522 9.37464 10.88794 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.002495 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.668785 B =11220.460273 C =11621.043750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.086 4.086 4 H 0.070 0.930 5 C -0.148 4.148 6 C 0.053 3.947 7 N -0.521 5.521 8 C 0.060 3.940 9 C -0.114 4.114 10 H 0.123 0.877 11 C 0.063 3.937 12 C 0.601 3.399 13 O -0.540 6.540 14 N -0.622 5.622 15 C 0.087 3.913 16 C -0.013 4.013 17 C -0.512 4.512 18 H 0.082 0.918 19 C 0.080 3.920 20 N -0.890 5.890 21 Si 0.872 3.128 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.263 1.263 25 C 0.118 3.882 26 N -0.229 5.229 27 O -0.179 6.179 28 C 0.032 3.968 29 H 0.116 0.884 30 C 0.053 3.947 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.267 0.733 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 15.060 -15.997 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.105 4.105 4 H 0.088 0.912 5 C -0.206 4.206 6 C -0.075 4.075 7 N -0.245 5.245 8 C -0.068 4.068 9 C -0.136 4.136 10 H 0.141 0.859 11 C -0.133 4.133 12 C 0.387 3.613 13 O -0.418 6.418 14 N -0.355 5.355 15 C -0.035 4.035 16 C -0.033 4.033 17 C -0.549 4.549 18 H 0.100 0.900 19 C -0.125 4.125 20 N -0.526 5.526 21 Si 0.698 3.302 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.188 1.188 25 C -0.003 4.003 26 N 0.029 4.971 27 O -0.201 6.201 28 C -0.027 4.027 29 H 0.134 0.866 30 C -0.075 4.075 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.410 14.159 -15.404 26.590 hybrid contribution 0.010 1.948 -0.149 1.954 sum -16.400 16.107 -15.554 27.755 Atomic orbital electron populations 1.21825 0.96430 1.01419 1.01383 1.21494 0.95048 0.95793 1.02821 1.21140 0.94155 0.97191 0.98015 0.91207 1.21862 1.01491 1.00093 0.97181 1.22505 0.96305 0.97962 0.90688 1.63067 1.17366 1.40480 1.03569 1.22605 0.86570 1.00974 0.96698 1.23429 0.95556 0.97328 0.97306 0.85913 1.25948 0.96045 0.98136 0.93134 1.16375 0.82874 0.80357 0.81737 1.90788 1.59154 1.60734 1.31080 1.49904 1.20202 1.38407 1.26948 1.24012 1.01669 0.95601 0.82211 1.20909 0.90989 0.99638 0.91715 1.20705 1.43297 0.96954 0.93975 0.90014 1.24984 0.94297 0.95431 0.97740 1.69886 1.46816 1.23644 1.12276 0.86909 0.80203 0.83162 0.79879 1.19648 1.21125 1.18786 1.23277 0.84384 0.94740 0.97929 1.78587 0.91532 1.11411 1.15574 1.91599 1.22969 1.38195 1.67367 1.25019 0.94773 0.91802 0.91118 0.86647 1.22785 0.98479 0.95238 0.91031 0.92978 0.92983 0.93006 0.90428 0.92530 0.92972 0.92612 0.92254 0.90471 0.94298 0.89688 0.91011 0.91685 0.89068 0.91411 0.92270 0.89399 0.91402 0.91508 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.11 -0.90 5.35 -26.73 -0.14 -1.04 16 3 C -0.09 -0.60 2.43 -90.62 -0.22 -0.82 16 4 H 0.07 0.50 7.54 -51.93 -0.39 0.11 16 5 C -0.15 -0.86 8.80 37.16 0.33 -0.53 16 6 C 0.05 0.41 4.01 -3.82 -0.02 0.39 16 7 N -0.52 -5.08 4.44 -233.46 -1.04 -6.12 16 8 C 0.06 0.68 6.43 -3.41 -0.02 0.66 16 9 C -0.11 -1.37 3.95 -89.43 -0.35 -1.72 16 10 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.06 1.00 6.18 -79.44 -0.49 0.51 16 12 C 0.60 11.06 8.07 -12.44 -0.10 10.96 16 13 O -0.54 -10.74 17.73 5.31 0.09 -10.64 16 14 N -0.62 -11.98 3.69 -186.59 -0.69 -12.67 16 15 C 0.09 1.76 6.85 -8.64 -0.06 1.70 16 16 C -0.01 -0.28 2.99 -91.38 -0.27 -0.55 16 17 C -0.51 -13.11 9.38 -34.44 -0.32 -13.43 16 18 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 19 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 20 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 21 Si 0.87 20.27 27.42 -169.99 -4.66 15.61 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.26 -5.87 6.21 56.52 0.35 -5.52 16 25 C 0.12 2.26 8.19 -8.49 -0.07 2.19 16 26 N -0.23 -3.90 10.98 35.30 0.39 -3.51 16 27 O -0.18 -2.71 12.25 -11.38 -0.14 -2.85 16 28 C 0.03 0.35 5.00 -24.93 -0.12 0.22 16 29 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 30 C 0.05 0.47 5.68 -3.35 -0.02 0.45 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.32 6.70 -51.93 -0.35 -0.03 16 34 H 0.08 0.76 7.61 -51.93 -0.40 0.37 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.32 6.87 -51.93 -0.36 -0.03 16 39 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 40 H 0.04 0.27 7.70 -51.93 -0.40 -0.13 16 41 H 0.08 1.14 7.60 -51.93 -0.39 0.74 16 42 H 0.07 0.72 7.45 -51.93 -0.39 0.33 16 43 H 0.06 1.31 7.49 -51.92 -0.39 0.92 16 44 H 0.09 1.85 8.10 -51.93 -0.42 1.43 16 45 H 0.07 1.50 6.50 -51.93 -0.34 1.16 16 46 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.07 0.45 7.44 -51.93 -0.39 0.06 16 50 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -29.50 395.93 -9.38 -38.88 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.45 Total: -0.15 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.62 Total: 0.30 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.56 Total: -47.11 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.05 Total: -13.49 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.66 Total: 15.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.50 -9.38 -38.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278135342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.261 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds