Wall clock time and date at job start Tue Mar 31 2020 18:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47271 * 2 1 4 4 H 1.09007 * 109.46829 * 54.99953 * 3 2 1 5 5 C 1.52998 * 109.47131 * 295.00236 * 3 2 1 6 6 C 1.52996 * 109.47158 * 175.00180 * 3 2 1 7 7 N 1.46905 * 109.47138 * 295.20593 * 6 3 2 8 8 C 1.46980 * 110.99873 * 164.47092 * 7 6 3 9 9 C 1.53717 * 108.14104 * 123.94562 * 8 7 6 10 10 H 1.09000 * 113.18007 * 251.78239 * 9 8 7 11 11 C 1.51777 * 108.83206 * 124.91370 * 9 8 7 12 12 C 1.47599 * 125.81038 * 86.04484 * 11 9 8 13 13 O 1.21560 * 119.99689 * 359.97438 * 12 11 9 14 14 N 1.34769 * 120.00523 * 179.97438 * 12 11 9 15 15 C 1.47069 * 136.05391 * 359.63108 * 14 12 11 16 16 C 1.53238 * 88.08146 * 207.20180 * 15 14 12 17 17 C 1.50697 * 114.32493 * 220.46722 * 16 15 14 18 18 H 1.08006 * 120.00279 * 93.75930 * 17 16 15 19 19 C 1.37877 * 120.00268 * 273.75730 * 17 16 15 20 20 N 1.31517 * 119.99860 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46913 * 89.99857 * 21 19 17 23 23 H 1.48499 * 109.47133 * 209.99723 * 21 19 17 24 24 H 1.48498 * 109.47070 * 329.99820 * 21 19 17 25 25 C 1.47069 * 136.06142 * 179.97438 * 14 12 11 26 26 N 1.28982 * 108.38525 * 266.03970 * 11 9 8 27 27 O 1.41408 * 112.87827 * 0.21030 * 26 11 9 28 28 C 1.46175 * 107.72913 * 341.77994 * 27 26 11 29 29 H 1.09005 * 113.64509 * 264.62151 * 28 27 26 30 30 C 1.47104 * 111.00157 * 286.18191 * 7 6 3 31 31 H 1.08995 * 109.47400 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47120 * 300.00197 * 1 2 3 33 33 H 1.09000 * 109.47255 * 59.99600 * 1 2 3 34 34 H 1.08998 * 109.47435 * 119.99895 * 2 1 3 35 35 H 1.08997 * 109.46889 * 240.00336 * 2 1 3 36 36 H 1.08994 * 109.47421 * 185.98780 * 5 3 2 37 37 H 1.09006 * 109.47216 * 305.98475 * 5 3 2 38 38 H 1.08996 * 109.47301 * 65.98403 * 5 3 2 39 39 H 1.09000 * 109.47163 * 55.20314 * 6 3 2 40 40 H 1.08999 * 109.47332 * 175.20720 * 6 3 2 41 41 H 1.09003 * 109.73962 * 243.62548 * 8 7 6 42 42 H 1.08996 * 109.73996 * 4.28291 * 8 7 6 43 43 H 1.09009 * 113.46914 * 321.93218 * 15 14 12 44 44 H 1.09001 * 113.46987 * 92.37220 * 15 14 12 45 45 H 1.09002 * 114.02010 * 87.71218 * 16 15 14 46 46 H 0.97007 * 119.99831 * 180.02562 * 20 19 17 47 47 H 1.08997 * 113.46509 * 267.62312 * 25 14 12 48 48 H 1.08997 * 113.46115 * 38.07195 * 25 14 12 49 49 H 1.09006 * 109.97971 * 338.62197 * 30 7 6 50 50 H 1.08994 * 109.98479 * 99.91215 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 7 3.9492 0.8917 1.4314 8 6 5.3747 0.5343 1.4531 9 6 6.0372 1.2793 2.6231 10 1 6.6902 2.0903 2.3006 11 6 6.7331 0.2686 3.5163 12 6 8.1037 -0.2473 3.3323 13 8 8.7780 0.1390 2.3975 14 7 8.6076 -1.1465 4.2005 15 6 8.1318 -1.8295 5.4130 16 6 9.5926 -1.9378 5.8629 17 6 9.9492 -3.2551 6.5021 18 1 10.3668 -4.0507 5.9028 19 6 9.7425 -3.4448 7.8520 20 7 10.0542 -4.5943 8.4099 21 14 9.0196 -2.0691 8.8886 22 1 7.5390 -2.1825 8.8985 23 1 9.5334 -2.1737 10.2779 24 1 9.4117 -0.7574 8.3132 25 6 9.8774 -1.8721 4.3559 26 7 5.9230 -0.0628 4.4637 27 8 4.6746 0.5953 4.3749 28 6 4.8444 1.7561 3.5029 29 1 5.0427 2.6826 4.0419 30 6 3.6733 1.8511 2.5118 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 2.0876 3.1171 -1.3544 37 1 1.9797 1.5294 -2.1517 38 1 0.5501 2.2205 -1.3474 39 1 3.9955 0.8340 -0.6681 40 1 3.9353 2.4659 0.0402 41 1 5.4825 -0.5413 1.5933 42 1 5.8432 0.8319 0.5150 43 1 7.5260 -1.1945 6.0595 44 1 7.6664 -2.7947 5.2132 45 1 9.9495 -1.0737 6.4235 46 1 9.9083 -4.7278 9.3596 47 1 9.8812 -2.8487 3.8719 48 1 10.7529 -1.2732 4.1052 49 1 3.6098 2.8609 2.1061 50 1 2.7404 1.5910 3.0118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278135342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:33 Heat of formation + Delta-G solvation = 12.768183 kcal Electronic energy + Delta-G solvation = -29509.145930 eV Core-core repulsion = 25539.078960 eV Total energy + Delta-G solvation = -3970.066970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.33992 -41.17367 -39.12952 -38.86293 -36.58795 -34.77790 -34.45031 -32.24175 -31.47311 -30.40586 -29.71130 -27.66702 -26.89789 -26.84432 -24.70057 -24.22910 -22.66958 -22.41204 -21.62649 -20.62746 -19.91262 -19.23228 -18.50855 -17.91072 -17.50628 -16.87982 -16.77021 -16.19464 -16.04638 -15.86733 -15.65496 -15.43436 -15.31141 -14.87613 -14.74114 -14.39730 -14.24799 -14.20239 -13.65015 -13.60237 -13.48585 -13.38948 -13.19536 -12.87553 -12.86780 -12.75772 -12.71842 -12.65022 -12.53823 -12.21329 -11.95318 -11.83771 -11.70614 -11.45116 -11.34789 -11.32953 -11.31827 -11.14610 -10.88861 -10.70622 -9.85066 -9.38447 -8.29910 -6.37194 -0.25371 1.33502 1.39475 1.41931 1.48805 1.73268 1.88748 2.35161 2.74401 2.89388 2.96995 3.00618 3.10444 3.42294 3.68692 3.85725 3.89148 4.00550 4.04746 4.10242 4.18434 4.19343 4.24210 4.34824 4.38236 4.53110 4.55324 4.59978 4.62226 4.68167 4.69679 4.72299 4.74780 4.76998 4.79935 4.82520 4.85614 4.90778 5.18418 5.19672 5.26119 5.32540 5.35347 5.52920 5.56615 5.60975 5.84383 5.86465 6.01858 6.25142 6.47049 6.69744 6.77361 7.30057 8.85104 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.002495 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.668785 B =11220.460273 C =11621.043750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.081 4.081 4 H 0.071 0.929 5 C -0.145 4.145 6 C 0.054 3.946 7 N -0.534 5.534 8 C 0.065 3.935 9 C -0.109 4.109 10 H 0.141 0.859 11 C 0.057 3.943 12 C 0.603 3.397 13 O -0.553 6.553 14 N -0.626 5.626 15 C 0.101 3.899 16 C -0.018 4.018 17 C -0.508 4.508 18 H 0.050 0.950 19 C 0.026 3.974 20 N -0.939 5.939 21 Si 0.929 3.071 22 H -0.266 1.266 23 H -0.286 1.286 24 H -0.245 1.245 25 C 0.123 3.877 26 N -0.255 5.255 27 O -0.192 6.192 28 C 0.032 3.968 29 H 0.142 0.858 30 C 0.058 3.942 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.268 0.732 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.657 18.319 -17.138 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.090 0.910 5 C -0.202 4.202 6 C -0.073 4.073 7 N -0.258 5.258 8 C -0.064 4.064 9 C -0.131 4.131 10 H 0.159 0.841 11 C -0.137 4.137 12 C 0.391 3.609 13 O -0.431 6.431 14 N -0.359 5.359 15 C -0.022 4.022 16 C -0.038 4.038 17 C -0.546 4.546 18 H 0.068 0.932 19 C -0.173 4.173 20 N -0.577 5.577 21 Si 0.754 3.246 22 H -0.191 1.191 23 H -0.212 1.212 24 H -0.169 1.169 25 C 0.002 3.998 26 N 0.004 4.996 27 O -0.216 6.216 28 C -0.026 4.026 29 H 0.159 0.841 30 C -0.070 4.070 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.100 0.900 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.984 17.440 -16.578 30.041 hybrid contribution 0.480 0.893 0.101 1.019 sum -17.504 18.333 -16.477 30.232 Atomic orbital electron populations 1.21805 0.95764 1.01366 1.01893 1.21448 0.95639 0.96442 1.01481 1.21102 0.93628 0.96428 0.98837 0.91034 1.21826 1.01831 1.00330 0.96257 1.22546 0.96686 0.98579 0.89478 1.63008 1.16278 1.41692 1.04868 1.22473 0.87649 0.99252 0.97002 1.23539 0.95729 0.96834 0.97015 0.84103 1.25817 0.94764 0.99026 0.94138 1.16631 0.83704 0.79557 0.81051 1.90775 1.59936 1.60984 1.31434 1.49833 1.20023 1.38893 1.27158 1.23678 1.00231 0.95630 0.82667 1.20804 0.92423 0.97514 0.93050 1.20875 1.42093 0.97826 0.93826 0.93204 1.25756 0.94921 0.97518 0.99124 1.70017 1.49113 1.25918 1.12695 0.85977 0.79515 0.81044 0.78110 1.19143 1.21198 1.16852 1.23160 0.85238 0.95362 0.96090 1.78532 0.92435 1.12261 1.16363 1.91563 1.21852 1.39728 1.68429 1.25428 0.95041 0.91241 0.90919 0.84055 1.22841 0.97379 0.96576 0.90222 0.93385 0.92964 0.91936 0.92743 0.92879 0.92078 0.92708 0.91838 0.90814 0.92727 0.92642 0.89758 0.91326 0.89662 0.91039 0.92247 0.89231 0.89992 0.88428 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 71.98 0.70 -1.23 16 2 C -0.11 -1.65 5.35 30.59 0.16 -1.49 16 3 C -0.08 -0.94 2.43 -10.79 -0.03 -0.96 16 4 H 0.07 0.83 7.54 -2.38 -0.02 0.81 16 5 C -0.14 -1.28 8.80 71.98 0.63 -0.65 16 6 C 0.05 0.70 4.01 86.30 0.35 1.04 16 7 N -0.53 -9.34 4.44 -892.54 -3.96 -13.30 16 8 C 0.07 1.37 6.43 86.53 0.56 1.92 16 9 C -0.11 -2.37 3.95 -10.02 -0.04 -2.41 16 10 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 11 C 0.06 1.75 6.18 45.79 0.28 2.03 16 12 C 0.60 21.50 8.07 86.72 0.70 22.20 16 13 O -0.55 -21.20 17.73 -3.91 -0.07 -21.27 16 14 N -0.63 -23.56 3.69 -862.52 -3.18 -26.75 16 15 C 0.10 4.00 6.85 83.09 0.57 4.57 16 16 C -0.02 -0.79 2.99 -11.29 -0.03 -0.82 16 17 C -0.51 -26.52 9.38 25.60 0.24 -26.28 16 18 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 19 C 0.03 1.42 5.47 84.65 0.46 1.88 16 20 N -0.94 -55.39 13.96 21.45 0.30 -55.09 16 21 Si 0.93 41.56 27.42 68.60 1.88 43.44 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.24 -10.13 6.21 99.48 0.62 -9.51 16 25 C 0.12 4.64 8.19 83.19 0.68 5.32 16 26 N -0.25 -8.38 10.98 -42.24 -0.46 -8.85 16 27 O -0.19 -5.51 12.25 -38.35 -0.47 -5.98 16 28 C 0.03 0.60 5.00 31.76 0.16 0.76 16 29 H 0.14 1.95 8.14 -2.38 -0.02 1.93 16 30 C 0.06 0.84 5.68 86.50 0.49 1.33 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.06 0.66 6.70 -2.39 -0.02 0.65 16 34 H 0.05 1.05 7.61 -2.39 -0.02 1.04 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.06 0.52 6.87 -2.39 -0.02 0.50 16 39 H 0.07 1.00 7.87 -2.39 -0.02 0.98 16 40 H 0.05 0.55 7.70 -2.39 -0.02 0.53 16 41 H 0.06 1.48 7.60 -2.39 -0.02 1.46 16 42 H 0.08 1.51 7.45 -2.39 -0.02 1.50 16 43 H 0.07 2.69 7.49 -2.38 -0.02 2.67 16 44 H 0.09 3.47 8.10 -2.39 -0.02 3.45 16 45 H 0.07 3.04 6.50 -2.39 -0.02 3.03 16 46 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 47 H 0.09 3.34 8.10 -2.39 -0.02 3.33 16 48 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 49 H 0.10 0.86 7.44 -2.38 -0.02 0.84 16 50 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -64.36 395.93 0.74 -63.62 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.83 Total: 16.95 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.88 Total: 7.22 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -7.31 Total: -103.99 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.54 Total: -27.25 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.44 kcal Total: -64.36 0.74 -63.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278135342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.389 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds