Wall clock time and date at job start Tue Mar 31 2020 19:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47096 * 2 1 4 4 N 1.46496 * 109.46584 * 120.00143 * 2 1 3 5 5 C 1.46497 * 120.00441 * 304.18433 * 4 2 1 6 6 C 1.52998 * 109.47146 * 263.39584 * 5 4 2 7 7 N 1.46506 * 109.47120 * 179.97438 * 6 5 4 8 8 C 1.46493 * 120.00160 * 89.99729 * 7 6 5 9 9 C 1.36934 * 119.99799 * 269.99694 * 7 6 5 10 10 H 1.08001 * 119.99802 * 31.94232 * 9 7 6 11 11 C 1.38811 * 120.00368 * 211.94256 * 9 7 6 12 12 N 1.31627 * 119.99557 * 6.23753 * 11 9 7 13 13 Si 1.86793 * 120.00432 * 186.24336 * 11 9 7 14 14 H 1.48496 * 109.47684 * 89.99908 * 13 11 9 15 15 H 1.48503 * 109.47460 * 209.99921 * 13 11 9 16 16 H 1.48499 * 109.47151 * 329.99702 * 13 11 9 17 17 C 1.34788 * 119.99940 * 124.19111 * 4 2 1 18 18 O 1.21614 * 119.99601 * 5.62697 * 17 4 2 19 19 C 1.47412 * 119.99969 * 185.63581 * 17 4 2 20 20 C 1.36091 * 126.44837 * 173.93901 * 19 17 4 21 21 O 1.34260 * 106.94903 * 180.29180 * 20 19 17 22 22 C 1.34051 * 108.22900 * 359.57878 * 21 20 19 23 23 C 1.50696 * 125.38213 * 180.16590 * 22 21 20 24 24 C 1.53783 * 113.61155 * 37.80486 * 23 22 21 25 25 C 1.53786 * 87.08208 * 220.01636 * 24 23 22 26 26 C 1.53777 * 113.61518 * 300.31108 * 23 22 21 27 27 N 1.29939 * 109.23820 * 0.43019 * 22 21 20 28 28 H 1.09005 * 109.46937 * 300.00178 * 1 2 3 29 29 H 1.09007 * 109.46962 * 59.99790 * 1 2 3 30 30 H 1.09000 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46853 * 239.99865 * 2 1 3 32 32 H 1.09010 * 109.46958 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47743 * 299.99647 * 3 2 1 34 34 H 1.08995 * 109.47380 * 60.00187 * 3 2 1 35 35 H 1.09004 * 109.46917 * 23.38764 * 5 4 2 36 36 H 1.08999 * 109.47423 * 143.39287 * 5 4 2 37 37 H 1.09003 * 109.47250 * 299.99182 * 6 5 4 38 38 H 1.09004 * 109.47659 * 59.99437 * 6 5 4 39 39 H 1.09004 * 109.47127 * 94.76942 * 8 7 6 40 40 H 1.08999 * 109.47450 * 214.77205 * 8 7 6 41 41 H 1.09000 * 109.47399 * 334.76873 * 8 7 6 42 42 H 0.96999 * 120.00085 * 179.97438 * 12 11 9 43 43 H 1.07998 * 126.52943 * 0.03303 * 20 19 17 44 44 H 1.08996 * 112.85194 * 169.10666 * 23 22 21 45 45 H 1.08993 * 113.62015 * 334.56583 * 24 23 22 46 46 H 1.08998 * 113.61453 * 105.47385 * 24 23 22 47 47 H 1.08999 * 113.61994 * 270.88728 * 25 24 23 48 48 H 1.09002 * 113.68843 * 139.98710 * 25 24 23 49 49 H 1.09009 * 113.61194 * 254.52929 * 26 23 22 50 50 H 1.09001 * 113.61760 * 25.42354 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.5903 -0.2459 2.5248 6 6 2.6508 0.6842 3.1173 7 7 2.2225 1.1294 4.4458 8 6 2.5918 0.3540 5.6325 9 6 1.4771 2.2705 4.5781 10 1 0.7866 2.5578 3.7989 11 6 1.6088 3.0578 5.7137 12 7 2.5353 2.7769 6.6054 13 14 0.4712 4.5159 5.9765 14 1 -0.7337 4.0753 6.7243 15 1 1.1806 5.5636 6.7539 16 1 0.0622 5.0682 4.6601 17 6 2.8613 -1.7352 1.0743 18 8 3.2973 -2.0403 -0.0192 19 6 3.2546 -2.5079 2.2665 20 6 3.9989 -3.6471 2.2823 21 8 4.1147 -4.0212 3.5666 22 6 3.4643 -3.1268 4.3241 23 6 3.3519 -3.1730 5.8262 24 6 4.6324 -3.6596 6.5250 25 6 3.7184 -4.4426 7.4824 26 6 2.6733 -4.4480 6.3542 27 7 2.9413 -2.2167 3.5582 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 0.6439 0.2885 2.4417 36 1 1.4628 -1.1120 3.1743 37 1 3.5972 0.1499 3.2005 38 1 2.7784 1.5503 2.4679 39 1 3.5008 0.7681 6.0688 40 1 1.7842 0.4009 6.3630 41 1 2.7651 -0.6841 5.3489 42 1 2.6277 3.3273 7.3988 43 1 4.4135 -4.1561 1.4248 44 1 2.9444 -2.2545 6.2486 45 1 5.2566 -4.2966 5.8986 46 1 5.1939 -2.8623 7.0120 47 1 3.4120 -3.8713 8.3586 48 1 4.0945 -5.4343 7.7338 49 1 1.6532 -4.2872 6.7032 50 1 2.7619 -5.3006 5.6809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278926765.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:29 Heat of formation + Delta-G solvation = 43.620440 kcal Electronic energy + Delta-G solvation = -31065.561996 eV Core-core repulsion = 27096.832881 eV Total energy + Delta-G solvation = -3968.729115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.36385 -39.70868 -38.68292 -36.59653 -35.23791 -34.70564 -32.22107 -31.07516 -30.41430 -27.94493 -27.05326 -26.19454 -25.79250 -25.68755 -24.40047 -23.40264 -21.80369 -21.11262 -20.49235 -19.60922 -18.62788 -17.43683 -16.98946 -16.65953 -16.45119 -15.88776 -15.74689 -15.27975 -14.90507 -14.59276 -14.02772 -13.70708 -13.62193 -13.52169 -13.04533 -12.92293 -12.76491 -12.67658 -12.54957 -12.52500 -12.23320 -12.02261 -11.84402 -11.41020 -11.25648 -11.10292 -11.01675 -10.85098 -10.76604 -10.64449 -10.59939 -10.58140 -10.41715 -10.32911 -9.98725 -9.84378 -9.73583 -9.36451 -8.90815 -8.57572 -8.26283 -6.49238 -5.64856 -3.20598 1.20618 2.15139 2.63031 3.18895 3.39279 3.45936 3.46842 3.48379 3.92868 4.39504 4.49511 4.52379 4.66935 4.71061 4.89960 4.93149 5.11973 5.27412 5.43101 5.49030 5.51113 5.54565 5.57095 5.66642 5.68807 5.72831 5.76870 5.77605 5.82598 5.85651 5.93667 5.96323 5.99326 6.03810 6.11496 6.28325 6.34168 6.38835 6.48556 6.62886 6.68174 7.05243 7.06505 7.16175 7.44034 7.60779 7.78156 7.84503 7.87206 8.36137 8.53770 9.33903 9.95577 10.50795 11.37348 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007846 B = 0.005478 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3567.754963 B = 5109.998542 C = 8148.343347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 C -0.163 4.163 4 N -0.582 5.582 5 C 0.073 3.927 6 C 0.153 3.847 7 N -0.591 5.591 8 C 0.157 3.843 9 C -0.255 4.255 10 H 0.061 0.939 11 C 0.008 3.992 12 N -0.904 5.904 13 Si 0.900 3.100 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.599 3.401 18 O -0.557 6.557 19 C -0.063 4.063 20 C -0.002 4.002 21 O -0.198 6.198 22 C 0.207 3.793 23 C -0.025 4.025 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.130 4.130 27 N -0.431 5.431 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.032 0.968 38 H 0.041 0.959 39 H 0.025 0.975 40 H 0.028 0.972 41 H 0.019 0.981 42 H 0.251 0.749 43 H 0.226 0.774 44 H 0.143 0.857 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 -14.959 -4.562 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 C -0.221 4.221 4 N -0.312 5.312 5 C -0.051 4.051 6 C 0.025 3.975 7 N -0.314 5.314 8 C 0.012 3.988 9 C -0.385 4.385 10 H 0.079 0.921 11 C -0.190 4.190 12 N -0.548 5.548 13 Si 0.730 3.270 14 H -0.215 1.215 15 H -0.218 1.218 16 H -0.205 1.205 17 C 0.386 3.614 18 O -0.437 6.437 19 C -0.183 4.183 20 C -0.076 4.076 21 O -0.084 6.084 22 C -0.002 4.002 23 C -0.044 4.044 24 C -0.171 4.171 25 C -0.176 4.176 26 C -0.168 4.168 27 N -0.159 5.159 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.242 0.758 44 H 0.161 0.839 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.922 -14.486 -4.729 15.266 hybrid contribution -0.247 0.509 -0.080 0.571 sum 0.675 -13.978 -4.808 14.797 Atomic orbital electron populations 1.22150 0.94926 1.02085 1.02700 1.21054 0.94005 0.93502 0.88451 1.22217 1.01686 0.95471 1.02696 1.48011 1.44908 1.29653 1.08667 1.23083 0.99868 1.01578 0.80570 1.20992 0.93832 0.94891 0.87831 1.43619 1.61880 1.25840 1.00069 1.20917 0.98942 0.90596 0.88313 1.19097 1.15358 0.99325 1.04701 0.92141 1.25225 0.97408 0.97608 0.98803 1.70022 1.33343 1.39912 1.11537 0.86335 0.80139 0.82731 0.77787 1.21542 1.21764 1.20492 1.16840 0.78816 0.79880 0.85822 1.90751 1.56171 1.70148 1.26586 1.21805 1.05318 0.98419 0.92722 1.25120 1.00604 0.97255 0.84640 1.84314 1.59603 1.47498 1.17035 1.26318 0.92809 0.84871 0.96179 1.21519 0.99954 1.01943 0.80941 1.23001 0.95680 1.00384 0.97995 1.22810 0.96668 1.00945 0.97166 1.23009 0.99566 0.96312 0.97962 1.71236 1.20858 1.23829 1.00002 0.91537 0.91583 0.92641 0.88748 0.92377 0.91956 0.91033 0.91208 0.87566 0.94951 0.94036 0.95694 0.95363 0.96306 0.93889 0.75797 0.83949 0.89551 0.90030 0.89302 0.90909 0.90210 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.11 37.16 0.34 -1.71 16 2 C 0.13 1.96 3.23 -67.93 -0.22 1.74 16 3 C -0.16 -2.35 8.49 37.15 0.32 -2.03 16 4 N -0.58 -9.83 2.39 -167.37 -0.40 -10.23 16 5 C 0.07 1.36 4.63 -4.04 -0.02 1.34 16 6 C 0.15 3.30 5.32 -4.04 -0.02 3.28 16 7 N -0.59 -14.78 2.90 -181.12 -0.52 -15.30 16 8 C 0.16 3.76 9.00 59.84 0.54 4.30 16 9 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 10 H 0.06 1.62 7.84 -52.49 -0.41 1.20 16 11 C 0.01 0.23 5.24 -17.43 -0.09 0.14 16 12 N -0.90 -26.23 10.93 55.49 0.61 -25.62 16 13 Si 0.90 21.73 29.56 -169.99 -5.02 16.70 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.60 10.48 7.61 -12.52 -0.10 10.38 16 18 O -0.56 -10.41 16.25 5.27 0.09 -10.32 16 19 C -0.06 -1.01 6.52 -83.02 -0.54 -1.56 16 20 C 0.00 -0.03 11.95 29.96 0.36 0.33 16 21 O -0.20 -2.58 10.40 6.50 0.07 -2.51 16 22 C 0.21 2.94 7.20 -13.08 -0.09 2.84 16 23 C -0.02 -0.29 4.07 -90.96 -0.37 -0.66 16 24 C -0.13 -1.30 7.62 -25.91 -0.20 -1.50 16 25 C -0.14 -1.14 8.08 -25.91 -0.21 -1.35 16 26 C -0.13 -1.23 7.63 -25.92 -0.20 -1.42 16 27 N -0.43 -7.16 5.28 -7.66 -0.04 -7.20 16 28 H 0.07 0.91 6.51 -51.93 -0.34 0.58 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.42 6.94 -51.93 -0.36 1.06 16 32 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.16 6.55 -51.93 -0.34 0.82 16 35 H 0.07 1.32 6.22 -51.93 -0.32 1.00 16 36 H 0.11 2.06 5.20 -51.93 -0.27 1.79 16 37 H 0.03 0.72 7.15 -51.93 -0.37 0.35 16 38 H 0.04 0.93 6.02 -51.93 -0.31 0.61 16 39 H 0.02 0.66 7.21 -51.93 -0.37 0.29 16 40 H 0.03 0.71 7.73 -51.93 -0.40 0.31 16 41 H 0.02 0.38 3.98 -51.93 -0.21 0.18 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.23 2.19 8.06 -52.49 -0.42 1.77 16 44 H 0.14 1.92 6.15 -51.93 -0.32 1.60 16 45 H 0.09 0.82 7.82 -51.93 -0.41 0.41 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 50 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -31.77 389.22 -7.81 -39.58 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.80 Total: 1.99 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -0.65 Total: 7.04 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.36 Total: -58.35 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.15 Total: -12.83 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.77 -7.81 -39.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278926765.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.204 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds