Wall clock time and date at job start Tue Mar 31 2020 19:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47096 * 2 1 4 4 N 1.46496 * 109.46584 * 120.00143 * 2 1 3 5 5 C 1.46497 * 120.00441 * 304.18433 * 4 2 1 6 6 C 1.52998 * 109.47146 * 263.39584 * 5 4 2 7 7 N 1.46506 * 109.47120 * 179.97438 * 6 5 4 8 8 C 1.46493 * 120.00160 * 89.99729 * 7 6 5 9 9 C 1.36934 * 119.99799 * 269.99694 * 7 6 5 10 10 H 1.08001 * 119.99802 * 31.94232 * 9 7 6 11 11 C 1.38811 * 120.00368 * 211.94256 * 9 7 6 12 12 N 1.31627 * 119.99557 * 6.23753 * 11 9 7 13 13 Si 1.86793 * 120.00432 * 186.24336 * 11 9 7 14 14 H 1.48496 * 109.47684 * 89.99908 * 13 11 9 15 15 H 1.48503 * 109.47460 * 209.99921 * 13 11 9 16 16 H 1.48499 * 109.47151 * 329.99702 * 13 11 9 17 17 C 1.34788 * 119.99940 * 124.19111 * 4 2 1 18 18 O 1.21614 * 119.99601 * 5.62697 * 17 4 2 19 19 C 1.47412 * 119.99969 * 185.63581 * 17 4 2 20 20 C 1.36091 * 126.44837 * 173.93901 * 19 17 4 21 21 O 1.34260 * 106.94903 * 180.29180 * 20 19 17 22 22 C 1.34051 * 108.22900 * 359.57878 * 21 20 19 23 23 C 1.50696 * 125.38213 * 180.16590 * 22 21 20 24 24 C 1.53783 * 113.61155 * 37.80486 * 23 22 21 25 25 C 1.53786 * 87.08208 * 220.01636 * 24 23 22 26 26 C 1.53777 * 113.61518 * 300.31108 * 23 22 21 27 27 N 1.29939 * 109.23820 * 0.43019 * 22 21 20 28 28 H 1.09005 * 109.46937 * 300.00178 * 1 2 3 29 29 H 1.09007 * 109.46962 * 59.99790 * 1 2 3 30 30 H 1.09000 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46853 * 239.99865 * 2 1 3 32 32 H 1.09010 * 109.46958 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47743 * 299.99647 * 3 2 1 34 34 H 1.08995 * 109.47380 * 60.00187 * 3 2 1 35 35 H 1.09004 * 109.46917 * 23.38764 * 5 4 2 36 36 H 1.08999 * 109.47423 * 143.39287 * 5 4 2 37 37 H 1.09003 * 109.47250 * 299.99182 * 6 5 4 38 38 H 1.09004 * 109.47659 * 59.99437 * 6 5 4 39 39 H 1.09004 * 109.47127 * 94.76942 * 8 7 6 40 40 H 1.08999 * 109.47450 * 214.77205 * 8 7 6 41 41 H 1.09000 * 109.47399 * 334.76873 * 8 7 6 42 42 H 0.96999 * 120.00085 * 179.97438 * 12 11 9 43 43 H 1.07998 * 126.52943 * 0.03303 * 20 19 17 44 44 H 1.08996 * 112.85194 * 169.10666 * 23 22 21 45 45 H 1.08993 * 113.62015 * 334.56583 * 24 23 22 46 46 H 1.08998 * 113.61453 * 105.47385 * 24 23 22 47 47 H 1.08999 * 113.61994 * 270.88728 * 25 24 23 48 48 H 1.09002 * 113.68843 * 139.98710 * 25 24 23 49 49 H 1.09009 * 113.61194 * 254.52929 * 26 23 22 50 50 H 1.09001 * 113.61760 * 25.42354 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.5903 -0.2459 2.5248 6 6 2.6508 0.6842 3.1173 7 7 2.2225 1.1294 4.4458 8 6 2.5918 0.3540 5.6325 9 6 1.4771 2.2705 4.5781 10 1 0.7866 2.5578 3.7989 11 6 1.6088 3.0578 5.7137 12 7 2.5353 2.7769 6.6054 13 14 0.4712 4.5159 5.9765 14 1 -0.7337 4.0753 6.7243 15 1 1.1806 5.5636 6.7539 16 1 0.0622 5.0682 4.6601 17 6 2.8613 -1.7352 1.0743 18 8 3.2973 -2.0403 -0.0192 19 6 3.2546 -2.5079 2.2665 20 6 3.9989 -3.6471 2.2823 21 8 4.1147 -4.0212 3.5666 22 6 3.4643 -3.1268 4.3241 23 6 3.3519 -3.1730 5.8262 24 6 4.6324 -3.6596 6.5250 25 6 3.7184 -4.4426 7.4824 26 6 2.6733 -4.4480 6.3542 27 7 2.9413 -2.2167 3.5582 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8899 35 1 0.6439 0.2885 2.4417 36 1 1.4628 -1.1120 3.1743 37 1 3.5972 0.1499 3.2005 38 1 2.7784 1.5503 2.4679 39 1 3.5008 0.7681 6.0688 40 1 1.7842 0.4009 6.3630 41 1 2.7651 -0.6841 5.3489 42 1 2.6277 3.3273 7.3988 43 1 4.4135 -4.1561 1.4248 44 1 2.9444 -2.2545 6.2486 45 1 5.2566 -4.2966 5.8986 46 1 5.1939 -2.8623 7.0120 47 1 3.4120 -3.8713 8.3586 48 1 4.0945 -5.4343 7.7338 49 1 1.6532 -4.2872 6.7032 50 1 2.7619 -5.3006 5.6809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278926765.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:28 Heat of formation + Delta-G solvation = 25.754852 kcal Electronic energy + Delta-G solvation = -31066.336706 eV Core-core repulsion = 27096.832881 eV Total energy + Delta-G solvation = -3969.503825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.47858 -41.04947 -39.50611 -38.12341 -36.90704 -35.98000 -33.76578 -32.83208 -31.53957 -29.66310 -28.17420 -27.80623 -27.08860 -26.56054 -25.65130 -25.12444 -22.93045 -22.40425 -22.11425 -20.67100 -19.75700 -18.71390 -18.63956 -18.01574 -17.79359 -17.18452 -16.83248 -16.60386 -16.19441 -16.03478 -15.49440 -15.24878 -15.16193 -14.70867 -14.61462 -14.32519 -14.07385 -13.98982 -13.69698 -13.49660 -13.30851 -13.23978 -13.22650 -12.94185 -12.76795 -12.70726 -12.49428 -12.28769 -12.20621 -12.11460 -11.94990 -11.89634 -11.69383 -11.59720 -11.40696 -11.38796 -11.27432 -10.83445 -10.62860 -10.05758 -9.71017 -8.54730 -7.75813 -5.35463 0.08583 0.96525 1.47871 1.48107 1.56650 1.57262 1.90949 2.19702 2.53040 2.83172 3.35603 3.43566 3.58044 3.69095 3.86906 3.91108 3.94133 3.97104 4.05444 4.13033 4.21016 4.31987 4.52862 4.60865 4.65600 4.66677 4.70075 4.73640 4.76365 4.80056 4.84122 4.89852 4.94297 4.98169 5.07488 5.08330 5.12403 5.16115 5.16500 5.25573 5.32098 5.38755 5.54003 5.57630 5.64519 5.70798 5.77662 6.28466 6.42805 6.57126 7.02740 7.23243 7.92354 8.42803 9.24279 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007846 B = 0.005478 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3567.754963 B = 5109.998542 C = 8148.343347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.128 3.872 3 C -0.156 4.156 4 N -0.584 5.584 5 C 0.098 3.902 6 C 0.164 3.836 7 N -0.606 5.606 8 C 0.176 3.824 9 C -0.262 4.262 10 H 0.064 0.936 11 C -0.045 4.045 12 N -0.935 5.935 13 Si 0.965 3.035 14 H -0.284 1.284 15 H -0.296 1.296 16 H -0.269 1.269 17 C 0.597 3.403 18 O -0.572 6.572 19 C -0.101 4.101 20 C 0.027 3.973 21 O -0.189 6.189 22 C 0.209 3.791 23 C -0.039 4.039 24 C -0.129 4.129 25 C -0.127 4.127 26 C -0.122 4.122 27 N -0.465 5.465 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.022 0.978 38 H 0.031 0.969 39 H -0.007 1.007 40 H 0.006 0.994 41 H 0.052 0.948 42 H 0.247 0.753 43 H 0.260 0.740 44 H 0.121 0.879 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 -16.274 -5.339 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 C -0.214 4.214 4 N -0.314 5.314 5 C -0.027 4.027 6 C 0.036 3.964 7 N -0.329 5.329 8 C 0.032 3.968 9 C -0.393 4.393 10 H 0.082 0.918 11 C -0.241 4.241 12 N -0.580 5.580 13 Si 0.793 3.207 14 H -0.211 1.211 15 H -0.222 1.222 16 H -0.193 1.193 17 C 0.385 3.615 18 O -0.454 6.454 19 C -0.220 4.220 20 C -0.048 4.048 21 O -0.075 6.075 22 C 0.000 4.000 23 C -0.058 4.058 24 C -0.167 4.167 25 C -0.164 4.164 26 C -0.160 4.160 27 N -0.194 5.194 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.012 0.988 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.275 0.725 44 H 0.139 0.861 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.365 -15.810 -5.542 16.757 hybrid contribution -0.005 0.857 0.096 0.862 sum 0.360 -14.953 -5.446 15.918 Atomic orbital electron populations 1.22092 0.93164 1.02407 1.03384 1.21257 0.95406 0.93256 0.87533 1.22156 1.00711 0.95454 1.03049 1.48029 1.45011 1.29875 1.08518 1.22556 0.98197 1.00488 0.81446 1.20944 0.94340 0.94790 0.86298 1.43833 1.61892 1.25824 1.01375 1.20658 0.96452 0.92103 0.87615 1.19405 1.15382 0.99807 1.04678 0.91836 1.25971 0.99060 1.00261 0.98779 1.70200 1.35028 1.40932 1.11875 0.85312 0.78171 0.79340 0.77880 1.21089 1.22242 1.19339 1.17055 0.78405 0.79867 0.86146 1.90728 1.56737 1.70655 1.27239 1.21810 1.07827 1.00096 0.92298 1.25733 0.98065 0.95736 0.85236 1.84348 1.59150 1.46979 1.16973 1.26693 0.92058 0.84413 0.96827 1.21676 1.02077 1.02364 0.79707 1.23025 0.95028 1.00493 0.98189 1.22778 0.95343 1.01730 0.96526 1.23009 0.99889 0.94886 0.98224 1.71107 1.22377 1.25303 1.00657 0.92713 0.88959 0.92496 0.88639 0.93795 0.89073 0.93095 0.91515 0.87915 0.95957 0.95085 0.98823 0.97564 0.92994 0.94348 0.72456 0.86100 0.88818 0.90581 0.89057 0.88882 0.89993 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.11 71.98 0.66 -3.01 16 2 C 0.13 3.65 3.23 44.99 0.15 3.80 16 3 C -0.16 -4.39 8.49 71.98 0.61 -3.78 16 4 N -0.58 -19.65 2.39 -801.70 -1.91 -21.56 16 5 C 0.10 3.67 4.63 86.38 0.40 4.08 16 6 C 0.16 7.23 5.32 86.38 0.46 7.69 16 7 N -0.61 -31.06 2.90 -726.93 -2.10 -33.17 16 8 C 0.18 8.78 9.00 127.77 1.15 9.92 16 9 C -0.26 -14.47 9.58 84.03 0.80 -13.66 16 10 H 0.06 3.41 7.84 -2.91 -0.02 3.38 16 11 C -0.05 -2.53 5.24 84.86 0.44 -2.09 16 12 N -0.93 -55.61 10.93 21.65 0.24 -55.37 16 13 Si 0.96 45.03 29.56 68.60 2.03 47.05 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 15 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 C 0.60 20.63 7.61 86.66 0.66 21.29 16 18 O -0.57 -20.92 16.25 -4.07 -0.07 -20.99 16 19 C -0.10 -3.22 6.52 40.40 0.26 -2.96 16 20 C 0.03 0.64 11.95 67.32 0.80 1.45 16 21 O -0.19 -4.56 10.40 0.35 0.00 -4.56 16 22 C 0.21 5.80 7.20 88.39 0.64 6.43 16 23 C -0.04 -0.92 4.07 -11.02 -0.04 -0.96 16 24 C -0.13 -2.39 7.62 31.12 0.24 -2.15 16 25 C -0.13 -1.84 8.08 31.12 0.25 -1.58 16 26 C -0.12 -2.10 7.63 31.12 0.24 -1.86 16 27 N -0.47 -15.46 5.28 -293.04 -1.55 -17.00 16 28 H 0.05 1.45 6.51 -2.38 -0.02 1.43 16 29 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 2.75 6.94 -2.39 -0.02 2.74 16 32 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.64 6.55 -2.39 -0.02 1.63 16 35 H 0.07 2.55 6.22 -2.38 -0.01 2.53 16 36 H 0.10 4.02 5.20 -2.39 -0.01 4.01 16 37 H 0.02 1.02 7.15 -2.39 -0.02 1.00 16 38 H 0.03 1.42 6.02 -2.39 -0.01 1.41 16 39 H -0.01 -0.36 7.21 -2.38 -0.02 -0.38 16 40 H 0.01 0.30 7.73 -2.39 -0.02 0.28 16 41 H 0.05 2.20 3.98 -2.39 -0.01 2.19 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.26 4.25 8.06 -2.91 -0.02 4.23 16 44 H 0.12 3.35 6.15 -2.39 -0.01 3.33 16 45 H 0.09 1.60 7.82 -2.39 -0.02 1.58 16 46 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 Total: -1.00 -69.29 389.22 5.30 -64.00 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.94 Total: 19.00 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 7.72 Total: 22.60 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -5.33 Total: -127.10 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.55 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -69.29 5.30 -64.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278926765.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.752 kcal (2) G-P(sol) polarization free energy of solvation -69.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds