Wall clock time and date at job start Tue Mar 31 2020 18:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47400 * 2 1 4 4 H 1.08998 * 109.46607 * 305.62461 * 3 2 1 5 5 C 1.50700 * 109.47034 * 185.62499 * 3 2 1 6 6 O 1.21277 * 120.00068 * 239.99445 * 5 3 2 7 7 N 1.34784 * 119.99759 * 60.00212 * 5 3 2 8 8 C 1.46497 * 119.99719 * 179.97438 * 7 5 3 9 9 H 1.09004 * 112.85236 * 334.66148 * 8 7 5 10 10 C 1.53781 * 113.61709 * 105.86449 * 8 7 5 11 11 C 1.54049 * 86.98762 * 89.15995 * 10 8 7 12 12 H 1.09007 * 113.68494 * 270.87427 * 11 10 8 13 13 C 1.52999 * 113.61784 * 139.98245 * 11 10 8 14 14 N 1.46497 * 109.47203 * 87.50300 * 13 11 10 15 15 C 1.36943 * 120.00027 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99800 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00068 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99512 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47382 * 60.00408 * 19 17 15 21 21 H 1.48501 * 109.47110 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47502 * 300.00170 * 19 17 15 23 23 C 1.53784 * 87.07782 * 25.43248 * 11 10 8 24 24 C 1.50702 * 109.47024 * 65.62781 * 3 2 1 25 25 C 1.41373 * 128.00756 * 63.54559 * 24 3 2 26 26 C 1.50697 * 126.80518 * 359.97438 * 25 24 3 27 27 N 1.30180 * 106.39470 * 179.97438 * 25 24 3 28 28 O 1.20919 * 111.60478 * 359.97438 * 27 25 24 29 29 C 1.34049 * 111.56810 * 359.76374 * 28 27 25 30 30 C 1.50695 * 126.77813 * 180.29003 * 29 28 27 31 31 H 1.08999 * 109.47395 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47008 * 59.99989 * 1 2 3 33 33 H 1.09000 * 109.47265 * 300.00970 * 1 2 3 34 34 H 1.09002 * 109.47008 * 120.00011 * 2 1 3 35 35 H 1.08997 * 109.47518 * 239.99481 * 2 1 3 36 36 H 0.96999 * 120.00040 * 359.97438 * 7 5 3 37 37 H 1.09000 * 113.61358 * 203.66881 * 10 8 7 38 38 H 1.09002 * 113.61410 * 334.55902 * 10 8 7 39 39 H 1.09004 * 109.46752 * 207.50276 * 13 11 10 40 40 H 1.08997 * 109.47402 * 327.50216 * 13 11 10 41 41 H 0.97000 * 120.00410 * 359.97438 * 14 13 11 42 42 H 0.97000 * 119.99389 * 179.97438 * 18 17 15 43 43 H 1.08995 * 113.61235 * 220.02301 * 23 11 10 44 44 H 1.08997 * 113.69072 * 89.12990 * 23 11 10 45 45 H 1.08994 * 109.47619 * 95.39065 * 26 25 24 46 46 H 1.08999 * 109.47250 * 215.39160 * 26 25 24 47 47 H 1.08998 * 109.47216 * 335.38471 * 26 25 24 48 48 H 1.09004 * 109.46919 * 264.96770 * 30 29 28 49 49 H 1.08999 * 109.47336 * 24.96901 * 30 29 28 50 50 H 1.09003 * 109.46841 * 144.97017 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 -0.8353 5 6 3.5406 1.4447 -0.1393 6 8 4.2293 1.9408 0.7270 7 7 4.1172 0.8954 -1.2267 8 6 5.5759 0.8980 -1.3623 9 1 6.0513 1.7060 -0.8061 10 6 6.2195 -0.4777 -1.1213 11 6 6.0267 -0.7411 -2.6268 12 1 5.0650 -1.1914 -2.8729 13 6 7.2062 -1.4658 -3.2783 14 7 7.0237 -2.9133 -3.1454 15 6 7.9601 -3.7714 -3.6574 16 1 8.8333 -3.3809 -4.1588 17 6 7.7873 -5.1429 -3.5310 18 7 6.7234 -5.6186 -2.9196 19 14 9.0651 -6.3133 -4.2289 20 1 10.3772 -6.0560 -3.5830 21 1 8.6494 -7.7143 -3.9652 22 1 9.1841 -6.1001 -5.6936 23 6 6.0594 0.7845 -2.8178 24 6 1.6547 2.1115 1.2942 25 6 2.0682 1.7768 2.6040 26 6 2.9993 0.6597 2.9990 27 7 1.4854 2.6249 3.4014 28 8 0.7956 3.4082 2.7908 29 6 0.8371 3.1769 1.4711 30 6 0.1147 3.9481 0.3968 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5140 0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 3.5664 0.4984 -1.9194 37 1 7.2650 -0.4234 -0.8179 38 1 5.6259 -1.1316 -0.4825 39 1 7.2565 -1.2014 -4.3346 40 1 8.1320 -1.1696 -2.7851 41 1 6.2395 -3.2640 -2.6948 42 1 6.6026 -6.5770 -2.8316 43 1 5.3366 1.1487 -3.5477 44 1 7.0607 1.1844 -2.9777 45 1 4.0127 1.0487 3.0969 46 1 2.6781 0.2388 3.9518 47 1 2.9803 -0.1167 2.2342 48 1 -0.8249 3.4486 0.1605 49 1 -0.0900 4.9587 0.7501 50 1 0.7363 3.9947 -0.4974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283077796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:38 Heat of formation + Delta-G solvation = 39.822944 kcal Electronic energy + Delta-G solvation = -29426.014143 eV Core-core repulsion = 25457.120356 eV Total energy + Delta-G solvation = -3968.893787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.06094 -40.45201 -38.65399 -36.27512 -34.61555 -34.11648 -33.42400 -32.70320 -30.85538 -29.13054 -28.69025 -27.53038 -26.59444 -25.53382 -23.56452 -23.05122 -22.22501 -21.41588 -20.47090 -20.22647 -19.11530 -17.90929 -17.36348 -17.08344 -16.82279 -16.04836 -15.54055 -15.09917 -14.80673 -14.63708 -14.33849 -14.06344 -13.92064 -13.67817 -13.64250 -13.40327 -13.27993 -13.17061 -12.92648 -12.82240 -12.57571 -12.49603 -12.38830 -12.23428 -12.13337 -11.71547 -11.52928 -11.31249 -11.04606 -10.86408 -10.82337 -10.50532 -10.38079 -10.12451 -10.00974 -9.86422 -9.80904 -9.62259 -9.29303 -9.03434 -8.84792 -6.91209 -5.76818 -3.04915 1.28185 2.07932 2.46952 2.90263 3.07122 3.43564 3.47925 3.48911 4.01541 4.23325 4.29592 4.47152 4.57118 4.59879 4.64973 4.76521 4.80372 4.84472 5.00399 5.02855 5.07464 5.09331 5.11423 5.15569 5.33193 5.42053 5.47721 5.51123 5.57398 5.61343 5.66950 5.71960 5.73619 5.81695 5.85667 5.88441 5.91156 5.99121 6.08839 6.14072 6.21395 6.29217 6.40384 6.61168 6.76874 6.91999 7.38988 7.69142 8.10611 8.18654 8.42620 9.53527 10.12532 10.46924 11.46121 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.002235 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.120144 B =12523.084173 C =12847.790719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.028 4.028 4 H 0.107 0.893 5 C 0.519 3.481 6 O -0.528 6.528 7 N -0.707 5.707 8 C 0.117 3.883 9 H 0.097 0.903 10 C -0.138 4.138 11 C -0.113 4.113 12 H 0.087 0.913 13 C 0.162 3.838 14 N -0.732 5.732 15 C -0.239 4.239 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.138 4.138 24 C -0.175 4.175 25 C 0.056 3.944 26 C -0.074 4.074 27 N -0.373 5.373 28 O 0.094 5.906 29 C -0.032 4.032 30 C -0.074 4.074 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.401 0.599 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.002 19.226 5.081 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.050 4.050 4 H 0.125 0.875 5 C 0.304 3.696 6 O -0.403 6.403 7 N -0.358 5.358 8 C 0.011 3.989 9 H 0.115 0.885 10 C -0.176 4.176 11 C -0.131 4.131 12 H 0.106 0.894 13 C 0.034 3.966 14 N -0.376 5.376 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.176 4.176 24 C -0.179 4.179 25 C -0.103 4.103 26 C -0.132 4.132 27 N -0.081 5.081 28 O 0.031 5.969 29 C -0.095 4.095 30 C -0.131 4.131 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.236 0.764 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.350 19.715 6.962 25.938 hybrid contribution 0.393 -1.354 -1.358 1.957 sum -14.957 18.361 5.604 24.336 Atomic orbital electron populations 1.21749 0.94607 1.02318 1.01945 1.21629 0.97116 0.93114 1.03742 1.19643 0.92809 0.98022 0.94493 0.87468 1.20370 0.89760 0.77740 0.81732 1.90713 1.64643 1.44850 1.40119 1.45674 1.07329 1.60096 1.22748 1.21935 0.79775 0.99287 0.97859 0.88452 1.23447 1.01402 0.95668 0.97130 1.22802 1.00494 0.94137 0.95693 0.89435 1.20636 0.93940 0.85464 0.96512 1.42335 1.26678 0.99249 1.69294 1.19199 1.00939 0.87612 1.29302 0.91313 1.24733 0.98049 0.96822 1.01461 1.69646 1.28306 1.12357 1.48017 0.86270 0.80922 0.80314 0.78702 1.21286 1.21694 1.21298 1.23304 1.02047 0.97207 0.95089 1.20182 1.03023 0.99426 0.95270 1.23264 0.99148 0.98494 0.89431 1.20235 0.97571 0.93575 1.01793 1.73818 1.09281 1.04169 1.20799 1.84795 1.51503 1.44296 1.16343 1.24128 1.01260 0.97880 0.86278 1.20333 0.99792 0.99662 0.93330 0.91980 0.92371 0.92713 0.90657 0.90362 0.76430 0.89201 0.91325 0.96444 0.96251 0.78350 0.93509 0.91293 0.88753 0.89409 0.91072 0.90434 0.89347 0.89776 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.73 37.16 0.36 -0.61 16 2 C -0.12 -0.91 5.30 -26.73 -0.14 -1.05 16 3 C -0.03 -0.24 2.46 -92.92 -0.23 -0.46 16 4 H 0.11 0.64 7.24 -51.93 -0.38 0.26 16 5 C 0.52 5.81 6.88 -10.98 -0.08 5.73 16 6 O -0.53 -7.89 13.66 5.56 0.08 -7.81 16 7 N -0.71 -7.09 5.12 -53.01 -0.27 -7.37 16 8 C 0.12 1.37 4.29 -67.12 -0.29 1.08 16 9 H 0.10 1.25 7.50 -51.93 -0.39 0.86 16 10 C -0.14 -1.95 7.45 -25.78 -0.19 -2.14 16 11 C -0.11 -1.65 3.65 -89.67 -0.33 -1.97 16 12 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 13 C 0.16 3.14 6.10 -4.04 -0.02 3.11 16 14 N -0.73 -18.28 5.60 -59.91 -0.34 -18.61 16 15 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 19 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C -0.14 -1.55 7.38 -25.91 -0.19 -1.74 16 24 C -0.17 -1.83 3.54 -104.42 -0.37 -2.20 16 25 C 0.06 0.70 6.66 -82.10 -0.55 0.16 16 26 C -0.07 -0.87 9.03 36.00 0.33 -0.54 16 27 N -0.37 -5.09 12.07 33.42 0.40 -4.69 16 28 O 0.09 1.11 11.20 17.15 0.19 1.30 16 29 C -0.03 -0.30 7.49 -35.30 -0.26 -0.56 16 30 C -0.07 -0.35 10.11 36.00 0.36 0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.41 7.40 -51.93 -0.38 0.02 16 34 H 0.07 0.67 5.72 -51.93 -0.30 0.38 16 35 H 0.08 0.54 7.41 -51.93 -0.38 0.15 16 36 H 0.40 3.17 8.06 -40.82 -0.33 2.84 16 37 H 0.09 1.32 7.90 -51.93 -0.41 0.91 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 41 H 0.38 10.03 7.67 -40.82 -0.31 9.72 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 45 H 0.09 1.13 7.74 -51.93 -0.40 0.73 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.84 5.73 -51.93 -0.30 0.54 16 48 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.09 0.34 7.56 -51.93 -0.39 -0.06 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -34.37 402.45 -8.17 -42.54 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.16 Total: 7.17 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.84 Total: -8.55 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.52 Total: -58.06 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: 0.27 Total: -6.51 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.37 -8.17 -42.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283077796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.361 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds