Wall clock time and date at job start Tue Mar 31 2020 18:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47400 * 2 1 4 4 H 1.08998 * 109.46607 * 305.62461 * 3 2 1 5 5 C 1.50700 * 109.47034 * 185.62499 * 3 2 1 6 6 O 1.21277 * 120.00068 * 239.99445 * 5 3 2 7 7 N 1.34784 * 119.99759 * 60.00212 * 5 3 2 8 8 C 1.46497 * 119.99719 * 179.97438 * 7 5 3 9 9 H 1.09004 * 112.85236 * 334.66148 * 8 7 5 10 10 C 1.53781 * 113.61709 * 105.86449 * 8 7 5 11 11 C 1.54049 * 86.98762 * 89.15995 * 10 8 7 12 12 H 1.09007 * 113.68494 * 270.87427 * 11 10 8 13 13 C 1.52999 * 113.61784 * 139.98245 * 11 10 8 14 14 N 1.46497 * 109.47203 * 87.50300 * 13 11 10 15 15 C 1.36943 * 120.00027 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99800 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00068 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99512 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47382 * 60.00408 * 19 17 15 21 21 H 1.48501 * 109.47110 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47502 * 300.00170 * 19 17 15 23 23 C 1.53784 * 87.07782 * 25.43248 * 11 10 8 24 24 C 1.50702 * 109.47024 * 65.62781 * 3 2 1 25 25 C 1.41373 * 128.00756 * 63.54559 * 24 3 2 26 26 C 1.50697 * 126.80518 * 359.97438 * 25 24 3 27 27 N 1.30180 * 106.39470 * 179.97438 * 25 24 3 28 28 O 1.20919 * 111.60478 * 359.97438 * 27 25 24 29 29 C 1.34049 * 111.56810 * 359.76374 * 28 27 25 30 30 C 1.50695 * 126.77813 * 180.29003 * 29 28 27 31 31 H 1.08999 * 109.47395 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47008 * 59.99989 * 1 2 3 33 33 H 1.09000 * 109.47265 * 300.00970 * 1 2 3 34 34 H 1.09002 * 109.47008 * 120.00011 * 2 1 3 35 35 H 1.08997 * 109.47518 * 239.99481 * 2 1 3 36 36 H 0.96999 * 120.00040 * 359.97438 * 7 5 3 37 37 H 1.09000 * 113.61358 * 203.66881 * 10 8 7 38 38 H 1.09002 * 113.61410 * 334.55902 * 10 8 7 39 39 H 1.09004 * 109.46752 * 207.50276 * 13 11 10 40 40 H 1.08997 * 109.47402 * 327.50216 * 13 11 10 41 41 H 0.97000 * 120.00410 * 359.97438 * 14 13 11 42 42 H 0.97000 * 119.99389 * 179.97438 * 18 17 15 43 43 H 1.08995 * 113.61235 * 220.02301 * 23 11 10 44 44 H 1.08997 * 113.69072 * 89.12990 * 23 11 10 45 45 H 1.08994 * 109.47619 * 95.39065 * 26 25 24 46 46 H 1.08999 * 109.47250 * 215.39160 * 26 25 24 47 47 H 1.08998 * 109.47216 * 335.38471 * 26 25 24 48 48 H 1.09004 * 109.46919 * 264.96770 * 30 29 28 49 49 H 1.08999 * 109.47336 * 24.96901 * 30 29 28 50 50 H 1.09003 * 109.46841 * 144.97017 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 -0.8353 5 6 3.5406 1.4447 -0.1393 6 8 4.2293 1.9408 0.7270 7 7 4.1172 0.8954 -1.2267 8 6 5.5759 0.8980 -1.3623 9 1 6.0513 1.7060 -0.8061 10 6 6.2195 -0.4777 -1.1213 11 6 6.0267 -0.7411 -2.6268 12 1 5.0650 -1.1914 -2.8729 13 6 7.2062 -1.4658 -3.2783 14 7 7.0237 -2.9133 -3.1454 15 6 7.9601 -3.7714 -3.6574 16 1 8.8333 -3.3809 -4.1588 17 6 7.7873 -5.1429 -3.5310 18 7 6.7234 -5.6186 -2.9196 19 14 9.0651 -6.3133 -4.2289 20 1 10.3772 -6.0560 -3.5830 21 1 8.6494 -7.7143 -3.9652 22 1 9.1841 -6.1001 -5.6936 23 6 6.0594 0.7845 -2.8178 24 6 1.6547 2.1115 1.2942 25 6 2.0682 1.7768 2.6040 26 6 2.9993 0.6597 2.9990 27 7 1.4854 2.6249 3.4014 28 8 0.7956 3.4082 2.7908 29 6 0.8371 3.1769 1.4711 30 6 0.1147 3.9481 0.3968 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5140 0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 3.5664 0.4984 -1.9194 37 1 7.2650 -0.4234 -0.8179 38 1 5.6259 -1.1316 -0.4825 39 1 7.2565 -1.2014 -4.3346 40 1 8.1320 -1.1696 -2.7851 41 1 6.2395 -3.2640 -2.6948 42 1 6.6026 -6.5770 -2.8316 43 1 5.3366 1.1487 -3.5477 44 1 7.0607 1.1844 -2.9777 45 1 4.0127 1.0487 3.0969 46 1 2.6781 0.2388 3.9518 47 1 2.9803 -0.1167 2.2342 48 1 -0.8249 3.4486 0.1605 49 1 -0.0900 4.9587 0.7501 50 1 0.7363 3.9947 -0.4974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283077796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:37 Heat of formation + Delta-G solvation = 17.640306 kcal Electronic energy + Delta-G solvation = -29426.976055 eV Core-core repulsion = 25457.120356 eV Total energy + Delta-G solvation = -3969.855698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.92271 -41.39523 -39.69857 -37.09400 -36.31071 -35.04354 -34.37559 -33.58386 -32.67569 -29.90242 -29.50754 -28.56185 -27.78836 -26.60065 -25.24994 -23.87517 -23.23296 -22.69157 -21.29553 -21.00339 -20.27369 -19.04636 -18.77668 -18.22146 -17.67903 -16.97204 -16.70448 -16.28807 -15.96912 -15.82293 -15.45437 -15.14155 -15.12677 -14.86817 -14.51039 -14.28173 -14.20846 -14.10748 -13.79697 -13.74566 -13.63054 -13.37081 -13.25559 -13.09570 -13.04711 -12.94311 -12.83692 -12.64981 -12.22605 -12.20822 -11.95350 -11.90988 -11.70975 -11.57427 -11.32335 -11.12031 -10.90127 -10.83525 -10.71624 -10.04379 -9.97899 -8.96326 -7.94192 -5.21984 0.53175 1.20306 1.47377 1.50133 1.56215 1.60614 2.17045 2.29870 2.56844 3.20914 3.38721 3.52932 3.55656 3.62507 3.64951 3.78874 3.95541 3.97189 3.99097 4.10283 4.24000 4.35816 4.40267 4.46011 4.55153 4.58875 4.63396 4.72953 4.74398 4.78699 4.80681 4.84571 4.87663 4.94336 4.94831 4.95893 5.01676 5.06488 5.17510 5.18448 5.25959 5.28846 5.30852 5.40068 5.42687 5.50450 5.72142 6.28865 6.58382 7.27589 7.34965 7.36305 8.13408 8.35670 9.29127 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.002235 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.120144 B =12523.084173 C =12847.790719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.017 4.017 4 H 0.144 0.856 5 C 0.517 3.483 6 O -0.569 6.569 7 N -0.697 5.697 8 C 0.129 3.871 9 H 0.090 0.910 10 C -0.144 4.144 11 C -0.109 4.109 12 H 0.090 0.910 13 C 0.159 3.841 14 N -0.744 5.744 15 C -0.246 4.246 16 H 0.073 0.927 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.972 3.028 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.276 1.276 23 C -0.116 4.116 24 C -0.189 4.189 25 C 0.035 3.965 26 C -0.070 4.070 27 N -0.407 5.407 28 O 0.083 5.917 29 C -0.021 4.021 30 C -0.075 4.075 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.415 0.585 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.022 0.978 40 H 0.016 0.984 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.112 0.888 49 H 0.095 0.905 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.075 20.633 2.780 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.039 4.039 4 H 0.161 0.839 5 C 0.304 3.696 6 O -0.447 6.447 7 N -0.349 5.349 8 C 0.024 3.976 9 H 0.108 0.892 10 C -0.182 4.182 11 C -0.128 4.128 12 H 0.108 0.892 13 C 0.033 3.967 14 N -0.387 5.387 15 C -0.378 4.378 16 H 0.091 0.909 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.801 3.199 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.202 1.202 23 C -0.154 4.154 24 C -0.193 4.193 25 C -0.123 4.123 26 C -0.127 4.127 27 N -0.116 5.116 28 O 0.022 5.978 29 C -0.084 4.084 30 C -0.132 4.132 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.252 0.748 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.131 0.869 49 H 0.114 0.886 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.426 21.156 4.624 27.180 hybrid contribution 0.740 -1.731 -0.631 1.985 sum -15.686 19.425 3.993 25.285 Atomic orbital electron populations 1.21715 0.93424 1.02484 1.02512 1.21638 0.98087 0.92461 1.03337 1.19688 0.90689 0.98769 0.94739 0.83873 1.20883 0.90869 0.76772 0.81065 1.90709 1.65804 1.46721 1.41516 1.45579 1.06695 1.59669 1.22932 1.21694 0.80674 0.97164 0.98109 0.89222 1.23451 1.00932 0.97250 0.96611 1.22731 0.98543 0.96108 0.95434 0.89225 1.20833 0.95908 0.82932 0.97062 1.42565 1.25806 1.01382 1.68935 1.19614 1.01353 0.88403 1.28440 0.90860 1.25547 1.00184 0.98533 1.02590 1.69800 1.30187 1.12211 1.49766 0.85238 0.78588 0.77752 0.78362 1.20627 1.22145 1.20248 1.23208 1.03301 0.93825 0.95108 1.20406 1.03628 1.00207 0.95099 1.23542 0.99370 0.98588 0.90821 1.20165 0.96568 0.93693 1.02290 1.73796 1.10592 1.05192 1.22039 1.84741 1.51309 1.44043 1.17742 1.24969 1.00261 0.97277 0.85930 1.20637 1.00574 0.99851 0.92133 0.92099 0.90035 0.93810 0.92655 0.89221 0.74804 0.90256 0.92945 0.96045 0.96562 0.79470 0.94041 0.88633 0.87977 0.91211 0.90576 0.89996 0.86936 0.88641 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.73 71.98 0.70 -0.84 16 2 C -0.12 -1.60 5.30 30.59 0.16 -1.43 16 3 C -0.02 -0.26 2.46 -12.28 -0.03 -0.29 16 4 H 0.14 1.07 7.24 -2.39 -0.02 1.06 16 5 C 0.52 10.88 6.88 87.66 0.60 11.49 16 6 O -0.57 -17.01 13.66 -3.02 -0.04 -17.05 16 7 N -0.70 -12.53 5.12 -440.02 -2.25 -14.79 16 8 C 0.13 2.84 4.29 45.52 0.20 3.04 16 9 H 0.09 2.20 7.50 -2.38 -0.02 2.18 16 10 C -0.14 -4.04 7.45 31.21 0.23 -3.80 16 11 C -0.11 -3.06 3.65 -10.18 -0.04 -3.09 16 12 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 13 C 0.16 6.03 6.10 86.38 0.53 6.56 16 14 N -0.74 -37.29 5.60 -343.45 -1.92 -39.21 16 15 C -0.25 -13.73 9.99 84.03 0.84 -12.89 16 16 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 17 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 18 N -0.97 -59.00 13.06 21.65 0.28 -58.71 16 19 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C -0.12 -2.29 7.38 31.12 0.23 -2.06 16 24 C -0.19 -3.75 3.54 -19.74 -0.07 -3.82 16 25 C 0.04 0.91 6.66 43.57 0.29 1.20 16 26 C -0.07 -1.74 9.03 71.23 0.64 -1.09 16 27 N -0.41 -11.44 12.07 -49.56 -0.60 -12.04 16 28 O 0.08 1.96 11.20 71.55 0.80 2.76 16 29 C -0.02 -0.35 7.49 25.04 0.19 -0.16 16 30 C -0.08 -0.45 10.11 71.23 0.72 0.27 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.04 0.57 7.40 -2.39 -0.02 0.56 16 34 H 0.05 0.98 5.72 -2.39 -0.01 0.96 16 35 H 0.09 1.01 7.41 -2.39 -0.02 0.99 16 36 H 0.41 5.25 8.06 -92.71 -0.75 4.51 16 37 H 0.08 2.38 7.90 -2.39 -0.02 2.36 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.02 0.64 7.85 -2.39 -0.02 0.62 16 41 H 0.37 19.83 7.67 -92.71 -0.71 19.12 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 1.92 8.10 -2.39 -0.02 1.90 16 45 H 0.07 1.95 7.74 -2.39 -0.02 1.94 16 46 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.08 1.89 5.73 -2.39 -0.01 1.88 16 48 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.11 0.32 7.56 -2.39 -0.02 0.30 16 Total: -1.00 -76.57 402.45 3.46 -73.12 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.50 Total: 28.76 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 5.66 Total: -10.85 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -4.49 Total: -124.75 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.76 Total: -14.29 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.57 3.46 -73.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283077796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.757 kcal (2) G-P(sol) polarization free energy of solvation -76.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds