Wall clock time and date at job start Tue Mar 31 2020 18:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47388 * 2 1 4 4 H 1.08999 * 109.47348 * 55.00275 * 3 2 1 5 5 C 1.53001 * 109.47319 * 175.00334 * 3 2 1 6 6 O 1.42901 * 109.47145 * 294.99757 * 3 2 1 7 7 C 1.35681 * 117.00222 * 149.99702 * 6 3 2 8 8 C 1.38895 * 119.62682 * 180.02562 * 7 6 3 9 9 C 1.39578 * 118.94809 * 179.97438 * 8 7 6 10 10 C 1.48161 * 120.88946 * 179.97438 * 9 8 7 11 11 O 1.21516 * 119.99544 * 140.99545 * 10 9 8 12 12 N 1.34771 * 120.00151 * 320.99939 * 10 9 8 13 13 C 1.46499 * 120.00294 * 5.11878 * 12 10 9 14 14 C 1.46505 * 119.99966 * 185.12543 * 12 10 9 15 15 C 1.52995 * 109.47290 * 89.99553 * 14 12 10 16 16 H 1.09003 * 109.47455 * 295.00040 * 15 14 12 17 17 C 1.53006 * 109.46929 * 175.00064 * 15 14 12 18 18 N 1.46495 * 109.47414 * 55.00221 * 15 14 12 19 19 C 1.36936 * 120.00296 * 204.99922 * 18 15 14 20 20 H 1.07996 * 120.00116 * 359.97438 * 19 18 15 21 21 C 1.38811 * 119.99878 * 179.97438 * 19 18 15 22 22 N 1.31625 * 119.99669 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00434 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47184 * 90.00041 * 23 21 19 25 25 H 1.48505 * 109.47386 * 209.99891 * 23 21 19 26 26 H 1.48504 * 109.46992 * 330.00113 * 23 21 19 27 27 C 1.39959 * 118.21465 * 0.02562 * 9 8 7 28 28 C 1.37977 * 119.13842 * 359.97438 * 27 9 8 29 29 N 1.31913 * 120.97470 * 359.74199 * 28 27 9 30 30 H 1.09000 * 109.47269 * 300.00171 * 1 2 3 31 31 H 1.09000 * 109.47241 * 60.00242 * 1 2 3 32 32 H 1.08996 * 109.47498 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47269 * 239.99829 * 2 1 3 34 34 H 1.09000 * 109.46978 * 120.00241 * 2 1 3 35 35 H 1.09002 * 109.47500 * 59.99184 * 5 3 2 36 36 H 1.09007 * 109.47047 * 299.99640 * 5 3 2 37 37 H 1.08996 * 109.47413 * 179.97438 * 5 3 2 38 38 H 1.07999 * 120.52164 * 0.02562 * 8 7 6 39 39 H 1.08998 * 109.46947 * 84.60359 * 13 12 10 40 40 H 1.09003 * 109.47264 * 204.60518 * 13 12 10 41 41 H 1.09007 * 109.47044 * 324.60423 * 13 12 10 42 42 H 1.09003 * 109.46635 * 209.99846 * 14 12 10 43 43 H 1.09004 * 109.46826 * 329.99581 * 14 12 10 44 44 H 1.08996 * 109.47241 * 299.99889 * 17 15 14 45 45 H 1.09004 * 109.47109 * 59.99908 * 17 15 14 46 46 H 1.08999 * 109.46936 * 180.02562 * 17 15 14 47 47 H 0.97008 * 119.99752 * 24.99623 * 18 15 14 48 48 H 0.97003 * 119.99610 * 180.02562 * 22 21 19 49 49 H 1.08003 * 120.43047 * 179.97438 * 27 9 8 50 50 H 1.08001 * 119.51245 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1256 6 8 1.6620 2.0813 -1.2211 7 6 1.4506 3.4208 -1.1757 8 6 1.0806 4.0970 -2.3311 9 6 0.8662 5.4748 -2.2682 10 6 0.4708 6.2389 -3.4745 11 8 -0.3453 7.1348 -3.3856 12 7 1.0163 5.9403 -4.6701 13 6 1.9140 4.7898 -4.7990 14 6 0.7115 6.7664 -5.8411 15 6 1.7335 7.9002 -5.9454 16 1 1.6275 8.5649 -5.0881 17 6 1.4915 8.6879 -7.2346 18 7 3.0863 7.3382 -5.9632 19 6 4.1478 8.0952 -5.5446 20 1 3.9878 9.1067 -5.2018 21 6 5.4295 7.5625 -5.5610 22 7 6.4499 8.2904 -5.1591 23 14 5.7064 5.8131 -6.1546 24 1 5.9591 5.8212 -7.6180 25 1 6.8792 5.2320 -5.4530 26 1 4.5011 4.9955 -5.8650 27 6 1.0359 6.1153 -1.0354 28 6 1.4052 5.3685 0.0645 29 7 1.5938 4.0664 -0.0313 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.9995 0.9051 -0.7161 36 1 3.8532 0.9569 1.0571 37 1 3.9282 2.4718 0.1252 38 1 0.9598 3.5650 -3.2632 39 1 1.3255 3.8852 -4.9519 40 1 2.5773 4.9401 -5.6508 41 1 2.5071 4.6882 -3.8901 42 1 0.7569 6.1523 -6.7406 43 1 -0.2888 7.1872 -5.7385 44 1 1.5976 8.0232 -8.0919 45 1 0.4850 9.1060 -7.2214 46 1 2.2199 9.4953 -7.3091 47 1 3.2300 6.4297 -6.2714 48 1 7.3456 7.9182 -5.1709 49 1 0.8797 7.1802 -0.9461 50 1 1.5382 5.8566 1.0187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283702180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:52 Heat of formation + Delta-G solvation = -14.689082 kcal Electronic energy + Delta-G solvation = -30032.149792 eV Core-core repulsion = 26060.892186 eV Total energy + Delta-G solvation = -3971.257606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.03418 -39.72463 -38.24242 -36.56410 -34.62741 -34.43995 -32.81353 -31.87273 -30.63071 -29.95329 -29.52136 -27.12830 -26.46403 -24.50177 -23.96840 -23.41559 -23.02506 -21.42757 -20.42457 -19.69518 -18.22763 -17.70744 -17.06836 -16.67143 -16.05443 -15.92517 -15.74449 -15.34466 -14.79872 -14.64653 -14.36718 -14.10046 -14.03727 -13.82797 -13.55862 -13.39889 -13.27211 -12.84389 -12.71879 -12.56100 -12.37730 -12.16441 -12.10256 -12.02008 -11.73886 -11.62716 -11.47777 -11.39486 -10.98865 -10.96324 -10.85855 -10.71812 -10.62880 -10.19372 -10.08107 -9.89839 -9.61743 -9.46780 -8.99259 -8.59686 -8.40705 -7.29157 -5.78925 -3.14220 0.76144 1.09523 2.74182 2.83328 3.17117 3.24642 3.32586 3.40097 3.73771 4.12595 4.41758 4.48339 4.53721 4.69093 4.81313 4.83722 4.93963 5.04564 5.14080 5.16234 5.26102 5.28812 5.33257 5.36951 5.47740 5.50637 5.51417 5.59126 5.62805 5.64417 5.66485 5.76611 5.80488 5.94644 5.95527 6.00089 6.01573 6.06080 6.12844 6.15986 6.26888 6.43179 6.60504 6.75357 7.00533 7.14351 7.45395 7.70480 7.97596 8.21098 8.39346 9.17363 9.89334 10.08952 11.39679 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.003655 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.316437 B = 7658.816019 C = 8778.028194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C 0.086 3.914 4 H 0.090 0.910 5 C -0.171 4.171 6 O -0.299 6.299 7 C 0.320 3.680 8 C -0.170 4.170 9 C -0.039 4.039 10 C 0.563 3.437 11 O -0.532 6.532 12 N -0.587 5.587 13 C 0.070 3.930 14 C 0.106 3.894 15 C 0.160 3.840 16 H 0.060 0.940 17 C -0.162 4.162 18 N -0.745 5.745 19 C -0.237 4.237 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.879 3.121 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.274 1.274 27 C -0.157 4.157 28 C 0.138 3.862 29 N -0.530 5.530 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.152 0.848 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.061 0.939 47 H 0.357 0.643 48 H 0.259 0.741 49 H 0.147 0.853 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 -15.248 8.898 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C 0.030 3.970 4 H 0.108 0.892 5 C -0.228 4.228 6 O -0.206 6.206 7 C 0.141 3.859 8 C -0.191 4.191 9 C -0.049 4.049 10 C 0.350 3.650 11 O -0.409 6.409 12 N -0.317 5.317 13 C -0.073 4.073 14 C -0.017 4.017 15 C 0.050 3.950 16 H 0.078 0.922 17 C -0.223 4.223 18 N -0.389 5.389 19 C -0.367 4.367 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.582 5.582 23 Si 0.710 3.290 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.201 1.201 27 C -0.178 4.178 28 C -0.017 4.017 29 N -0.254 5.254 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.191 0.809 48 H 0.069 0.931 49 H 0.165 0.835 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.592 -15.271 9.523 21.965 hybrid contribution 0.515 -0.745 -1.011 1.357 sum -12.077 -16.016 8.512 21.790 Atomic orbital electron populations 1.21756 0.95262 1.01727 1.02328 1.21689 0.96726 0.94361 1.03116 1.22412 0.95306 0.92967 0.86355 0.89200 1.22228 0.94962 1.03198 1.02421 1.86281 1.82488 1.15885 1.35983 1.19574 0.92210 0.84706 0.89388 1.21512 1.05057 0.93569 0.98929 1.20132 0.97010 0.92954 0.94845 1.18071 0.81252 0.83034 0.82667 1.90764 1.33495 1.31367 1.85318 1.47496 1.46075 1.29557 1.08577 1.22357 0.93460 0.86877 1.04609 1.21998 1.00125 0.93326 0.86256 1.20635 0.84659 0.93103 0.96649 0.92217 1.22337 1.00017 1.01016 0.98915 1.42808 1.02582 1.14123 1.79404 1.19057 0.85023 0.97341 1.35230 0.89318 1.24653 0.95516 0.97481 1.01540 1.69699 0.98751 1.36231 1.53536 0.86708 0.77274 0.86303 0.78700 1.21203 1.21833 1.20089 1.22057 1.01548 1.02376 0.91789 1.22363 0.93045 0.87600 0.98699 1.67101 1.19963 1.11816 1.26549 0.92800 0.92147 0.92517 0.90913 0.90073 0.91918 0.91167 0.91735 0.83090 0.92642 0.89819 0.90557 0.90608 0.89311 0.93518 0.93876 0.91985 0.80881 0.93129 0.83539 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.81 37.15 0.36 -0.84 16 2 C -0.12 -0.96 5.64 -26.74 -0.15 -1.11 16 3 C 0.09 0.87 2.49 -26.73 -0.07 0.80 16 4 H 0.09 0.95 6.97 -51.93 -0.36 0.59 16 5 C -0.17 -1.65 9.53 37.16 0.35 -1.30 16 6 O -0.30 -3.71 9.30 -18.75 -0.17 -3.88 16 7 C 0.32 4.32 7.45 -17.16 -0.13 4.20 16 8 C -0.17 -2.32 7.62 -38.84 -0.30 -2.61 16 9 C -0.04 -0.58 5.26 -104.68 -0.55 -1.14 16 10 C 0.56 9.63 7.40 -12.19 -0.09 9.54 16 11 O -0.53 -10.33 16.50 5.35 0.09 -10.24 16 12 N -0.59 -9.48 2.73 -182.57 -0.50 -9.98 16 13 C 0.07 1.03 8.43 59.85 0.50 1.53 16 14 C 0.11 1.66 5.07 -4.04 -0.02 1.64 16 15 C 0.16 3.04 3.20 -67.93 -0.22 2.82 16 16 H 0.06 1.28 8.08 -51.93 -0.42 0.87 16 17 C -0.16 -2.76 9.49 37.16 0.35 -2.40 16 18 N -0.74 -16.75 4.37 -53.43 -0.23 -16.98 16 19 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 23 Si 0.88 21.22 27.74 -169.99 -4.71 16.50 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.27 -5.84 5.04 56.52 0.29 -5.55 16 27 C -0.16 -2.16 9.75 -39.03 -0.38 -2.54 16 28 C 0.14 1.67 11.17 -17.61 -0.20 1.47 16 29 N -0.53 -6.95 8.61 -13.38 -0.12 -7.07 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.15 1.83 5.38 -52.49 -0.28 1.55 16 39 H 0.06 0.63 6.89 -51.93 -0.36 0.27 16 40 H 0.08 1.34 4.25 -51.93 -0.22 1.12 16 41 H 0.08 1.19 5.87 -51.93 -0.30 0.88 16 42 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 43 H 0.09 1.34 7.36 -51.93 -0.38 0.96 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.36 7.69 3.50 -40.82 -0.14 7.55 16 48 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 49 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 50 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 398.79 15.07 6.01 6.01 Total: -1.00 -33.04 398.79 -7.68 -40.72 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -8.05 Total: 9.78 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.77 Total: 3.41 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.07 Total: -62.30 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.09 Total: -14.12 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.04 -7.68 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283702180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.029 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds