Wall clock time and date at job start Tue Mar 31 2020 19:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47339 * 2 1 4 4 N 1.46493 * 109.47141 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99878 * 90.00163 * 4 3 2 6 6 O 1.21287 * 119.99777 * 179.97438 * 5 4 3 7 7 C 1.50697 * 120.00151 * 359.97438 * 5 4 3 8 8 C 1.50699 * 109.47421 * 180.02562 * 7 5 4 9 9 C 1.34326 * 126.44443 * 90.01987 * 8 7 5 10 10 N 1.34476 * 107.67261 * 180.02562 * 9 8 7 11 11 C 1.30258 * 108.69627 * 0.02562 * 10 9 8 12 12 C 1.50702 * 125.61747 * 180.02562 * 11 10 9 13 13 O 1.33968 * 108.76583 * 0.02562 * 11 10 9 14 14 C 1.46496 * 120.00339 * 269.99803 * 4 3 2 15 15 C 1.53039 * 109.46435 * 240.03256 * 14 4 3 16 16 C 1.53189 * 109.31671 * 178.59766 * 15 14 4 17 17 N 1.46939 * 108.76237 * 54.65344 * 16 15 14 18 18 C 1.36935 * 120.62930 * 126.36406 * 17 16 15 19 19 H 1.08006 * 120.00012 * 331.86377 * 18 17 16 20 20 C 1.38809 * 119.99884 * 151.85818 * 18 17 16 21 21 N 1.31617 * 120.00441 * 343.07116 * 20 18 17 22 22 Si 1.86800 * 119.99590 * 163.06572 * 20 18 17 23 23 H 1.48502 * 109.46983 * 90.00425 * 22 20 18 24 24 H 1.48507 * 109.47043 * 209.99880 * 22 20 18 25 25 H 1.48499 * 109.47465 * 330.00137 * 22 20 18 26 26 C 1.46919 * 118.73694 * 306.38432 * 17 16 15 27 27 C 1.53037 * 109.46164 * 119.97304 * 14 4 3 28 28 H 1.09001 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47188 * 299.99924 * 1 2 3 30 30 H 1.09000 * 109.47551 * 59.99908 * 1 2 3 31 31 H 1.09008 * 109.47182 * 240.00107 * 2 1 3 32 32 H 1.09000 * 109.47551 * 120.00092 * 2 1 3 33 33 H 1.08998 * 109.46919 * 59.99911 * 3 2 1 34 34 H 1.09003 * 109.46639 * 300.00056 * 3 2 1 35 35 H 1.09001 * 109.47162 * 60.00060 * 7 5 4 36 36 H 1.08994 * 109.47117 * 300.00130 * 7 5 4 37 37 H 1.08000 * 126.16764 * 359.96016 * 9 8 7 38 38 H 1.09003 * 109.47120 * 269.97982 * 12 11 10 39 39 H 1.09001 * 109.47033 * 29.97631 * 12 11 10 40 40 H 1.09006 * 109.47092 * 149.97896 * 12 11 10 41 41 H 1.09003 * 109.45814 * 0.02562 * 14 4 3 42 42 H 1.09001 * 109.49344 * 298.56081 * 15 14 4 43 43 H 1.08999 * 109.50004 * 58.65701 * 15 14 4 44 44 H 1.08998 * 109.59723 * 294.86934 * 16 15 14 45 45 H 1.08999 * 109.70311 * 174.49902 * 16 15 14 46 46 H 0.96994 * 120.00675 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.58877 * 293.81959 * 26 17 16 48 48 H 1.08998 * 109.70299 * 173.46346 * 26 17 16 49 49 H 1.09002 * 109.50131 * 301.34246 * 27 14 4 50 50 H 1.09001 * 109.49647 * 61.43736 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1783 1.4427 -1.1682 6 8 5.3912 1.4431 -1.1686 7 6 3.4243 1.4423 -2.4729 8 6 4.4031 1.4420 -3.6188 9 6 4.9210 0.3612 -4.2255 10 7 5.7485 0.7937 -5.1933 11 6 5.7484 2.0963 -5.1915 12 6 6.5439 2.9752 -6.1220 13 8 4.9248 2.5259 -4.2262 14 6 4.2380 1.4423 1.2677 15 6 5.1173 2.6923 1.3487 16 6 5.8555 2.7065 2.6909 17 7 6.5892 1.4421 2.8402 18 6 7.9310 1.4422 3.1133 19 1 8.5481 2.2671 2.7888 20 6 8.4981 0.3822 3.8073 21 7 7.7320 -0.4446 4.4867 22 14 10.3486 0.1293 3.7767 23 1 10.9686 0.8737 4.9022 24 1 10.6527 -1.3179 3.9133 25 1 10.8957 0.6308 2.4905 26 6 5.8558 0.1779 2.6904 27 6 5.1173 0.1923 1.3483 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 2.7973 2.3321 -2.5304 36 1 2.7980 0.5522 -2.5303 37 1 4.7115 -0.6693 -3.9797 38 1 7.5171 3.1866 -5.6789 39 1 6.6818 2.4645 -7.0750 40 1 6.0081 3.9104 -6.2850 41 1 3.5299 1.4418 2.0964 42 1 5.8422 2.6805 0.5347 43 1 4.4930 3.5821 1.2677 44 1 5.1357 2.8093 3.5030 45 1 6.5565 3.5408 2.7160 46 1 8.1282 -1.1856 4.9714 47 1 5.1360 0.0746 3.5025 48 1 6.5553 -0.6577 2.7136 49 1 4.4930 -0.6975 1.2670 50 1 5.8421 0.2043 0.5343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317007217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:25 Heat of formation + Delta-G solvation = 5.445967 kcal Electronic energy + Delta-G solvation = -30326.567606 eV Core-core repulsion = 26356.183121 eV Total energy + Delta-G solvation = -3970.384485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.36004 -40.20044 -37.10749 -36.07347 -34.77123 -33.64443 -33.05045 -32.02234 -30.76702 -29.94471 -29.32344 -26.43445 -26.17548 -24.67868 -22.74543 -22.22999 -22.12999 -21.72151 -21.10208 -19.58729 -18.78578 -17.26748 -17.07241 -16.70638 -16.20597 -15.99195 -15.43175 -14.81663 -14.75405 -14.37598 -14.18930 -13.87372 -13.70712 -13.58701 -13.41329 -13.21404 -13.02859 -13.00756 -12.77974 -12.64662 -12.52751 -12.35095 -12.20128 -11.87864 -11.54661 -11.37998 -11.27689 -11.08489 -10.99889 -10.86544 -10.63681 -10.57626 -10.29665 -10.10270 -10.02442 -9.66838 -9.53715 -9.29116 -8.68626 -8.48925 -8.27557 -6.59797 -5.72357 -3.13384 1.36178 2.49183 2.65119 2.73900 3.15409 3.43131 3.49737 3.54596 3.97259 4.41151 4.53115 4.56941 4.67542 4.73065 4.84399 4.91230 5.06614 5.09131 5.17438 5.20385 5.30497 5.37399 5.38221 5.41981 5.48997 5.50811 5.62394 5.68942 5.76761 5.80189 5.85729 5.87063 5.93102 6.08157 6.17625 6.28932 6.33603 6.38856 6.55834 6.62806 6.77445 6.84996 7.04124 7.12782 7.41123 7.59173 7.68497 7.73850 7.87052 8.34984 8.52560 9.28592 9.92046 10.48371 11.36584 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.003801 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.099000 B = 7364.219801 C = 9467.747902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.105 3.895 4 N -0.609 5.609 5 C 0.510 3.490 6 O -0.508 6.508 7 C -0.056 4.056 8 C -0.025 4.025 9 C -0.024 4.024 10 N -0.484 5.484 11 C 0.188 3.812 12 C -0.056 4.056 13 O -0.197 6.197 14 C 0.162 3.838 15 C -0.147 4.147 16 C 0.151 3.849 17 N -0.590 5.590 18 C -0.247 4.247 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.905 5.905 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.177 3.823 27 C -0.153 4.153 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.181 0.819 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.015 0.985 45 H 0.054 0.946 46 H 0.253 0.747 47 H 0.015 0.985 48 H 0.088 0.912 49 H 0.044 0.956 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 4.623 -16.557 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.018 4.018 4 N -0.342 5.342 5 C 0.296 3.704 6 O -0.383 6.383 7 C -0.097 4.097 8 C -0.079 4.079 9 C -0.163 4.163 10 N -0.214 5.214 11 C -0.019 4.019 12 C -0.113 4.113 13 O -0.084 6.084 14 C 0.060 3.940 15 C -0.187 4.187 16 C 0.024 3.976 17 N -0.312 5.312 18 C -0.377 4.377 19 H 0.081 0.919 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.050 3.950 27 C -0.193 4.193 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.198 0.802 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.106 0.894 49 H 0.062 0.938 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.157 4.187 -16.846 23.045 hybrid contribution 0.307 0.037 0.662 0.730 sum -14.850 4.223 -16.185 22.368 Atomic orbital electron populations 1.21708 0.95160 1.02022 1.01860 1.22015 0.95992 0.97244 1.03192 1.21712 0.80022 0.96936 1.03148 1.48310 1.06085 1.73389 1.06400 1.20179 0.88173 0.77453 0.84613 1.90782 1.13414 1.47367 1.86709 1.20183 0.95339 1.06125 0.88016 1.22484 1.01973 0.84700 0.98719 1.22940 0.97677 1.00180 0.95482 1.70414 1.19950 1.09249 1.21756 1.26221 0.93842 0.90554 0.91258 1.20242 0.98063 0.97147 0.95858 1.84340 1.47890 1.36463 1.39741 1.21131 0.93081 0.97282 0.82494 1.22451 0.99237 0.95032 1.02006 1.20833 0.94154 0.90322 0.92297 1.44014 1.05847 0.99413 1.81939 1.19170 0.83257 1.06551 1.28711 0.91863 1.25000 0.97752 0.99920 0.96955 1.70019 1.33937 1.18237 1.32801 0.86327 0.85713 0.77086 0.77873 1.21435 1.21567 1.20471 1.20714 0.94080 0.90572 0.89604 1.22630 0.99001 0.94364 1.03325 0.92442 0.92466 0.92704 0.91852 0.90951 0.90073 0.90763 0.87310 0.85954 0.80178 0.88832 0.88217 0.89498 0.90500 0.90069 0.93672 0.96710 0.92696 0.93747 0.96681 0.89372 0.93779 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.15 -1.20 6.26 -26.73 -0.17 -1.37 16 3 C 0.11 0.94 5.18 -4.04 -0.02 0.92 16 4 N -0.61 -8.21 2.42 -166.07 -0.40 -8.61 16 5 C 0.51 7.59 7.09 -10.98 -0.08 7.52 16 6 O -0.51 -10.24 12.28 5.55 0.07 -10.17 16 7 C -0.06 -0.60 4.80 -29.04 -0.14 -0.73 16 8 C -0.03 -0.34 5.88 -35.69 -0.21 -0.55 16 9 C -0.02 -0.34 11.80 -17.77 -0.21 -0.55 16 10 N -0.48 -7.23 11.29 -11.10 -0.13 -7.35 16 11 C 0.19 2.47 8.34 -12.94 -0.11 2.36 16 12 C -0.06 -0.44 10.51 36.01 0.38 -0.06 16 13 O -0.20 -2.81 10.78 5.35 0.06 -2.75 16 14 C 0.16 2.76 2.51 -67.89 -0.17 2.59 16 15 C -0.15 -2.80 5.27 -26.61 -0.14 -2.94 16 16 C 0.15 3.32 6.52 -3.70 -0.02 3.29 16 17 N -0.59 -15.46 2.99 -172.31 -0.52 -15.97 16 18 C -0.25 -7.12 9.58 -15.06 -0.14 -7.27 16 19 H 0.06 1.81 7.89 -52.48 -0.41 1.40 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -26.91 11.19 55.49 0.62 -26.29 16 22 Si 0.90 22.63 29.59 -169.99 -5.03 17.60 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.18 4.36 5.30 -3.71 -0.02 4.34 16 27 C -0.15 -3.13 5.27 -26.61 -0.14 -3.27 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.51 7.22 -51.92 -0.37 0.14 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 34 H 0.07 0.49 6.44 -51.93 -0.33 0.15 16 35 H 0.11 0.88 7.40 -51.93 -0.38 0.50 16 36 H 0.12 0.92 7.18 -51.93 -0.37 0.54 16 37 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 1.24 7.79 -51.93 -0.40 0.83 16 42 H 0.08 1.79 6.21 -51.93 -0.32 1.47 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 1.20 7.93 -51.93 -0.41 0.79 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 49 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.08 1.83 6.21 -51.93 -0.32 1.51 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -36.08 395.19 -8.56 -44.64 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.28 Total: -0.72 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.91 Total: 3.67 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.42 Total: -58.23 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.13 Total: -12.92 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.08 -8.56 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317007217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.088 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds