Wall clock time and date at job start Tue Mar 31 2020 19:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47339 * 2 1 4 4 N 1.46493 * 109.47141 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99878 * 90.00163 * 4 3 2 6 6 O 1.21287 * 119.99777 * 179.97438 * 5 4 3 7 7 C 1.50697 * 120.00151 * 359.97438 * 5 4 3 8 8 C 1.50699 * 109.47421 * 180.02562 * 7 5 4 9 9 C 1.34326 * 126.44443 * 90.01987 * 8 7 5 10 10 N 1.34476 * 107.67261 * 180.02562 * 9 8 7 11 11 C 1.30258 * 108.69627 * 0.02562 * 10 9 8 12 12 C 1.50702 * 125.61747 * 180.02562 * 11 10 9 13 13 O 1.33968 * 108.76583 * 0.02562 * 11 10 9 14 14 C 1.46496 * 120.00339 * 269.99803 * 4 3 2 15 15 C 1.53039 * 109.46435 * 240.03256 * 14 4 3 16 16 C 1.53189 * 109.31671 * 178.59766 * 15 14 4 17 17 N 1.46939 * 108.76237 * 54.65344 * 16 15 14 18 18 C 1.36935 * 120.62930 * 126.36406 * 17 16 15 19 19 H 1.08006 * 120.00012 * 331.86377 * 18 17 16 20 20 C 1.38809 * 119.99884 * 151.85818 * 18 17 16 21 21 N 1.31617 * 120.00441 * 343.07116 * 20 18 17 22 22 Si 1.86800 * 119.99590 * 163.06572 * 20 18 17 23 23 H 1.48502 * 109.46983 * 90.00425 * 22 20 18 24 24 H 1.48507 * 109.47043 * 209.99880 * 22 20 18 25 25 H 1.48499 * 109.47465 * 330.00137 * 22 20 18 26 26 C 1.46919 * 118.73694 * 306.38432 * 17 16 15 27 27 C 1.53037 * 109.46164 * 119.97304 * 14 4 3 28 28 H 1.09001 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47188 * 299.99924 * 1 2 3 30 30 H 1.09000 * 109.47551 * 59.99908 * 1 2 3 31 31 H 1.09008 * 109.47182 * 240.00107 * 2 1 3 32 32 H 1.09000 * 109.47551 * 120.00092 * 2 1 3 33 33 H 1.08998 * 109.46919 * 59.99911 * 3 2 1 34 34 H 1.09003 * 109.46639 * 300.00056 * 3 2 1 35 35 H 1.09001 * 109.47162 * 60.00060 * 7 5 4 36 36 H 1.08994 * 109.47117 * 300.00130 * 7 5 4 37 37 H 1.08000 * 126.16764 * 359.96016 * 9 8 7 38 38 H 1.09003 * 109.47120 * 269.97982 * 12 11 10 39 39 H 1.09001 * 109.47033 * 29.97631 * 12 11 10 40 40 H 1.09006 * 109.47092 * 149.97896 * 12 11 10 41 41 H 1.09003 * 109.45814 * 0.02562 * 14 4 3 42 42 H 1.09001 * 109.49344 * 298.56081 * 15 14 4 43 43 H 1.08999 * 109.50004 * 58.65701 * 15 14 4 44 44 H 1.08998 * 109.59723 * 294.86934 * 16 15 14 45 45 H 1.08999 * 109.70311 * 174.49902 * 16 15 14 46 46 H 0.96994 * 120.00675 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.58877 * 293.81959 * 26 17 16 48 48 H 1.08998 * 109.70299 * 173.46346 * 26 17 16 49 49 H 1.09002 * 109.50131 * 301.34246 * 27 14 4 50 50 H 1.09001 * 109.49647 * 61.43736 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1783 1.4427 -1.1682 6 8 5.3912 1.4431 -1.1686 7 6 3.4243 1.4423 -2.4729 8 6 4.4031 1.4420 -3.6188 9 6 4.9210 0.3612 -4.2255 10 7 5.7485 0.7937 -5.1933 11 6 5.7484 2.0963 -5.1915 12 6 6.5439 2.9752 -6.1220 13 8 4.9248 2.5259 -4.2262 14 6 4.2380 1.4423 1.2677 15 6 5.1173 2.6923 1.3487 16 6 5.8555 2.7065 2.6909 17 7 6.5892 1.4421 2.8402 18 6 7.9310 1.4422 3.1133 19 1 8.5481 2.2671 2.7888 20 6 8.4981 0.3822 3.8073 21 7 7.7320 -0.4446 4.4867 22 14 10.3486 0.1293 3.7767 23 1 10.9686 0.8737 4.9022 24 1 10.6527 -1.3179 3.9133 25 1 10.8957 0.6308 2.4905 26 6 5.8558 0.1779 2.6904 27 6 5.1173 0.1923 1.3483 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 2.7973 2.3321 -2.5304 36 1 2.7980 0.5522 -2.5303 37 1 4.7115 -0.6693 -3.9797 38 1 7.5171 3.1866 -5.6789 39 1 6.6818 2.4645 -7.0750 40 1 6.0081 3.9104 -6.2850 41 1 3.5299 1.4418 2.0964 42 1 5.8422 2.6805 0.5347 43 1 4.4930 3.5821 1.2677 44 1 5.1357 2.8093 3.5030 45 1 6.5565 3.5408 2.7160 46 1 8.1282 -1.1856 4.9714 47 1 5.1360 0.0746 3.5025 48 1 6.5553 -0.6577 2.7136 49 1 4.4930 -0.6975 1.2670 50 1 5.8421 0.2043 0.5343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317007217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:24 Heat of formation + Delta-G solvation = -19.219310 kcal Electronic energy + Delta-G solvation = -30327.637173 eV Core-core repulsion = 26356.183121 eV Total energy + Delta-G solvation = -3971.454051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.34046 -41.40827 -38.75967 -37.18373 -35.78708 -35.10394 -34.01668 -33.42405 -32.03661 -31.54152 -30.80256 -27.53264 -27.21004 -26.20017 -24.14559 -23.90352 -23.30328 -22.59149 -22.12004 -21.16528 -20.01570 -18.91037 -18.06595 -18.01251 -17.27078 -17.25374 -16.82732 -16.38138 -15.74992 -15.50820 -15.36177 -15.26183 -15.07886 -14.91824 -14.73940 -14.54427 -14.15910 -14.08267 -13.88990 -13.80212 -13.35635 -13.27587 -13.19168 -13.08191 -12.95583 -12.73000 -12.63084 -12.59906 -12.30956 -12.20562 -12.18758 -12.01301 -11.81565 -11.64362 -11.54214 -11.39622 -11.23562 -10.70104 -10.52405 -9.66644 -9.56956 -8.70552 -7.91604 -5.35505 0.38161 1.40244 1.42797 1.52825 1.55803 1.62777 1.70215 2.10427 2.47389 3.14700 3.23453 3.46795 3.66010 3.66474 3.97562 4.01789 4.03424 4.06072 4.08654 4.24998 4.32359 4.35599 4.45894 4.51112 4.60370 4.63334 4.64411 4.66315 4.66646 4.75977 4.81547 4.88017 4.93774 4.99468 5.00466 5.02876 5.08245 5.15073 5.29188 5.34172 5.37068 5.41709 5.48387 5.53533 5.60329 5.66082 5.78229 6.36047 6.49887 6.69860 7.11836 7.24278 7.83244 8.33800 9.14871 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.003801 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.099000 B = 7364.219801 C = 9467.747902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.099 3.901 4 N -0.602 5.602 5 C 0.504 3.496 6 O -0.570 6.570 7 C -0.044 4.044 8 C -0.036 4.036 9 C -0.045 4.045 10 N -0.519 5.519 11 C 0.182 3.818 12 C -0.056 4.056 13 O -0.211 6.211 14 C 0.171 3.829 15 C -0.133 4.133 16 C 0.147 3.853 17 N -0.610 5.610 18 C -0.266 4.266 19 H 0.057 0.943 20 C -0.046 4.046 21 N -0.931 5.931 22 Si 0.962 3.038 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.280 1.280 26 C 0.185 3.815 27 C -0.136 4.136 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.194 0.806 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.027 0.973 45 H 0.048 0.952 46 H 0.251 0.749 47 H 0.007 0.993 48 H 0.048 0.952 49 H 0.060 0.940 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.753 5.793 -17.892 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C -0.022 4.022 4 N -0.333 5.333 5 C 0.293 3.707 6 O -0.449 6.449 7 C -0.084 4.084 8 C -0.089 4.089 9 C -0.183 4.183 10 N -0.249 5.249 11 C -0.024 4.024 12 C -0.113 4.113 13 O -0.098 6.098 14 C 0.068 3.932 15 C -0.173 4.173 16 C 0.021 3.979 17 N -0.334 5.334 18 C -0.396 4.396 19 H 0.074 0.926 20 C -0.242 4.242 21 N -0.577 5.577 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.205 1.205 26 C 0.058 3.942 27 C -0.176 4.176 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.211 0.789 38 H 0.117 0.883 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.734 5.370 -18.191 25.966 hybrid contribution 1.074 -0.309 1.061 1.541 sum -16.660 5.061 -17.130 24.426 Atomic orbital electron populations 1.21672 0.93379 1.02322 1.02901 1.21975 0.97424 0.96524 1.02294 1.22094 0.76634 0.97916 1.05553 1.48236 1.07955 1.72521 1.04608 1.20948 0.87692 0.75948 0.86133 1.90777 1.16321 1.50116 1.87646 1.20310 0.94518 1.09449 0.84077 1.22976 1.02353 0.84323 0.99226 1.23310 0.97932 1.01257 0.95800 1.70407 1.21127 1.10443 1.22925 1.27243 0.93266 0.90798 0.91103 1.20524 0.97784 0.97593 0.95389 1.84346 1.48294 1.37017 1.40186 1.20783 0.92977 0.94297 0.85147 1.22227 0.98949 0.97466 0.98614 1.20983 0.94202 0.88288 0.94405 1.44261 1.05605 1.01190 1.82319 1.19427 0.84903 1.06673 1.28581 0.92566 1.25711 1.01802 0.99773 0.96914 1.70149 1.35451 1.18563 1.33489 0.85360 0.80886 0.76877 0.77861 1.20392 1.21421 1.20511 1.20487 0.93085 0.88956 0.91624 1.22325 0.98731 0.97284 0.99241 0.92599 0.92281 0.90810 0.91512 0.93270 0.88925 0.87168 0.83876 0.82372 0.78915 0.88337 0.86702 0.87053 0.88610 0.93302 0.90432 0.95488 0.93369 0.93995 0.97532 0.93403 0.92092 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.14 -1.88 6.26 30.59 0.19 -1.69 16 3 C 0.10 1.34 5.18 86.38 0.45 1.79 16 4 N -0.60 -14.67 2.42 -797.70 -1.93 -16.61 16 5 C 0.50 14.15 7.09 87.66 0.62 14.77 16 6 O -0.57 -23.26 12.28 -3.05 -0.04 -23.29 16 7 C -0.04 -0.79 4.80 29.10 0.14 -0.65 16 8 C -0.04 -0.91 5.88 24.79 0.15 -0.77 16 9 C -0.05 -1.24 11.80 83.39 0.98 -0.26 16 10 N -0.52 -15.49 11.29 -303.83 -3.43 -18.92 16 11 C 0.18 4.68 8.34 88.34 0.74 5.42 16 12 C -0.06 -0.81 10.51 71.24 0.75 -0.06 16 13 O -0.21 -5.79 10.78 -3.76 -0.04 -5.83 16 14 C 0.17 5.62 2.51 45.02 0.11 5.73 16 15 C -0.13 -4.94 5.27 30.67 0.16 -4.78 16 16 C 0.15 6.49 6.52 86.36 0.56 7.05 16 17 N -0.61 -32.97 2.99 -699.08 -2.09 -35.06 16 18 C -0.27 -15.82 9.58 84.03 0.81 -15.01 16 19 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 20 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 21 N -0.93 -57.03 11.19 21.65 0.24 -56.79 16 22 Si 0.96 47.75 29.59 68.60 2.03 49.77 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 25 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 26 C 0.18 9.45 5.30 86.36 0.46 9.91 16 27 C -0.14 -5.64 5.27 30.67 0.16 -5.48 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.83 7.22 -2.38 -0.02 0.82 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.12 7.92 -2.39 -0.02 1.10 16 34 H 0.11 0.78 6.44 -2.39 -0.02 0.76 16 35 H 0.14 1.59 7.40 -2.39 -0.02 1.58 16 36 H 0.16 1.66 7.18 -2.39 -0.02 1.65 16 37 H 0.19 4.42 8.06 -2.91 -0.02 4.39 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.10 2.84 7.79 -2.39 -0.02 2.82 16 42 H 0.05 2.18 6.21 -2.39 -0.01 2.16 16 43 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 46 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 47 H 0.01 0.34 8.14 -2.38 -0.02 0.33 16 48 H 0.05 2.81 6.06 -2.39 -0.01 2.79 16 49 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.04 2.21 6.21 -2.39 -0.01 2.20 16 Total: -1.00 -84.08 395.19 3.07 -81.01 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.92 Total: 12.64 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 7.41 Total: 13.08 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -7.21 Total: -127.38 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.08 Total: -29.13 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -84.08 3.07 -81.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317007217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.789 kcal (2) G-P(sol) polarization free energy of solvation -84.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds