Wall clock time and date at job start Tue Mar 31 2020 18:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47582 * 2 1 4 4 H 1.09004 * 109.46660 * 54.99891 * 3 2 1 5 5 C 1.53002 * 109.47553 * 174.99874 * 3 2 1 6 6 O 1.42900 * 109.47254 * 295.00364 * 3 2 1 7 7 C 1.35680 * 117.00111 * 149.99693 * 6 3 2 8 8 C 1.38894 * 119.62346 * 180.27585 * 7 6 3 9 9 C 1.39580 * 118.94833 * 180.22814 * 8 7 6 10 10 C 1.48158 * 120.89412 * 179.77955 * 9 8 7 11 11 O 1.21520 * 119.99773 * 19.22462 * 10 9 8 12 12 N 1.34769 * 120.00059 * 199.23053 * 10 9 8 13 13 C 1.46497 * 120.00377 * 7.12964 * 12 10 9 14 14 C 1.46509 * 120.00066 * 187.13864 * 12 10 9 15 15 C 1.53002 * 109.46788 * 269.99575 * 14 12 10 16 16 C 1.53000 * 109.46970 * 179.97438 * 15 14 12 17 17 N 1.46500 * 109.46930 * 179.97438 * 16 15 14 18 18 C 1.36937 * 119.99859 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99969 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00149 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99865 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47085 * 90.00018 * 22 20 18 24 24 H 1.48496 * 109.46996 * 209.99846 * 22 20 18 25 25 H 1.48494 * 109.46961 * 329.99895 * 22 20 18 26 26 C 1.39969 * 118.20971 * 359.50249 * 9 8 7 27 27 C 1.37966 * 119.13877 * 0.25377 * 26 9 8 28 28 N 1.31909 * 120.97778 * 359.97438 * 27 26 9 29 29 H 1.09001 * 109.46840 * 59.99205 * 1 2 3 30 30 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47113 * 299.99971 * 1 2 3 32 32 H 1.09004 * 109.47113 * 240.00029 * 2 1 3 33 33 H 1.09002 * 109.47461 * 120.00090 * 2 1 3 34 34 H 1.08998 * 109.46843 * 59.99987 * 5 3 2 35 35 H 1.08995 * 109.47108 * 180.02562 * 5 3 2 36 36 H 1.08993 * 109.46962 * 300.00352 * 5 3 2 37 37 H 1.07997 * 120.52669 * 0.02562 * 8 7 6 38 38 H 1.09001 * 109.47669 * 264.84225 * 13 12 10 39 39 H 1.09007 * 109.46788 * 24.83868 * 13 12 10 40 40 H 1.08997 * 109.47052 * 144.83299 * 13 12 10 41 41 H 1.09001 * 109.47165 * 149.99751 * 14 12 10 42 42 H 1.09003 * 109.47132 * 29.99317 * 14 12 10 43 43 H 1.09000 * 109.47236 * 300.00284 * 15 14 12 44 44 H 1.09001 * 109.47123 * 60.00151 * 15 14 12 45 45 H 1.09003 * 109.47216 * 299.99905 * 16 15 14 46 46 H 1.09001 * 109.46900 * 60.00228 * 16 15 14 47 47 H 0.96989 * 120.00093 * 0.02562 * 17 16 15 48 48 H 0.97000 * 119.99806 * 179.97438 * 21 20 18 49 49 H 1.08001 * 120.42255 * 180.22937 * 26 9 8 50 50 H 1.08007 * 119.51165 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.4507 3.4209 -1.1755 8 6 1.0755 4.0963 -2.3297 9 6 0.8665 5.4750 -2.2680 10 6 0.4701 6.2390 -3.4739 11 8 -0.0120 5.6612 -4.4280 12 7 0.6442 7.5749 -3.5127 13 6 1.3657 8.2512 -2.4319 14 6 0.1119 8.3507 -4.6356 15 6 1.1667 8.4385 -5.7404 16 6 0.6106 9.2482 -6.9134 17 7 1.6209 9.3327 -7.9710 18 6 1.3465 10.0132 -9.1271 19 1 0.3854 10.4880 -9.2592 20 6 2.3035 10.0929 -10.1295 21 7 3.4749 9.5147 -9.9683 22 14 1.9294 11.0219 -11.7063 23 1 2.3325 12.4427 -11.5513 24 1 2.6847 10.4129 -12.8306 25 1 0.4738 10.9485 -11.9906 26 6 1.0356 6.1153 -1.0349 27 6 1.4049 5.3684 0.0648 28 7 1.5984 4.0672 -0.0321 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9995 0.9052 -0.7160 35 1 3.9282 2.4719 0.1262 36 1 3.8532 0.9569 1.0571 37 1 0.9507 3.5637 -3.2609 38 1 0.6523 8.6296 -1.6998 39 1 2.0419 7.5455 -1.9491 40 1 1.9400 9.0817 -2.8425 41 1 -0.1424 9.3546 -4.2955 42 1 -0.7814 7.8615 -5.0242 43 1 2.0600 8.9276 -5.3518 44 1 1.4210 7.4346 -6.0805 45 1 -0.2825 8.7586 -7.3019 46 1 0.3560 10.2521 -6.5736 47 1 2.4838 8.9060 -7.8525 48 1 4.1435 9.5701 -10.6689 49 1 0.8795 7.1802 -0.9457 50 1 1.5368 5.8563 1.0193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322778972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:37 Heat of formation + Delta-G solvation = -11.456817 kcal Electronic energy + Delta-G solvation = -28210.334152 eV Core-core repulsion = 24239.216708 eV Total energy + Delta-G solvation = -3971.117444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32206 -39.99382 -38.42868 -36.34172 -35.03490 -34.56387 -33.22365 -32.04586 -30.92763 -30.17316 -29.62819 -27.35815 -26.11010 -24.61817 -24.09442 -23.44643 -22.72435 -21.46547 -20.91235 -20.04477 -18.61115 -17.55543 -17.03797 -16.68610 -16.31908 -16.14399 -15.80468 -15.46059 -14.97454 -14.69652 -14.49835 -14.38777 -14.26662 -14.10613 -13.78863 -13.54648 -13.36298 -13.24432 -13.05011 -12.94282 -12.81638 -12.31795 -12.15770 -12.02016 -11.92791 -11.64163 -11.49578 -11.11807 -11.01520 -10.92531 -10.83778 -10.74856 -10.42148 -10.35092 -10.19397 -10.04481 -9.76080 -9.68623 -8.85122 -8.83665 -8.76191 -6.88383 -5.72692 -3.01461 0.42533 0.79634 2.46711 2.67734 2.90286 3.46176 3.48672 3.50931 3.53257 3.87795 4.09228 4.32594 4.53239 4.54744 4.59533 4.62902 4.67900 4.77952 4.91169 4.98418 5.03502 5.12549 5.16954 5.19844 5.31245 5.34346 5.37018 5.39698 5.46495 5.54113 5.56417 5.59400 5.65632 5.67564 5.71940 5.77420 5.88104 5.90118 6.01857 6.07233 6.30481 6.40179 6.45506 6.87875 6.89603 6.93778 7.16450 7.44781 7.73106 7.94268 8.46212 9.56968 10.15665 10.50185 11.50381 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.001843 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.207787 B =15191.380369 C =15821.534523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.170 4.170 6 O -0.296 6.296 7 C 0.323 3.677 8 C -0.135 4.135 9 C -0.047 4.047 10 C 0.554 3.446 11 O -0.517 6.517 12 N -0.604 5.604 13 C 0.059 3.941 14 C 0.120 3.880 15 C -0.140 4.140 16 C 0.157 3.843 17 N -0.733 5.733 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.206 4.206 27 C 0.134 3.866 28 N -0.529 5.529 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.153 0.847 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.165 0.835 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 -13.402 29.738 32.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.029 3.971 4 H 0.108 0.892 5 C -0.227 4.227 6 O -0.203 6.203 7 C 0.144 3.856 8 C -0.156 4.156 9 C -0.058 4.058 10 C 0.341 3.659 11 O -0.392 6.392 12 N -0.337 5.337 13 C -0.083 4.083 14 C -0.002 4.002 15 C -0.179 4.179 16 C 0.028 3.972 17 N -0.377 5.377 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.226 4.226 27 C -0.021 4.021 28 N -0.253 5.253 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.170 0.830 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.182 0.818 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.968 -14.279 29.591 33.095 hybrid contribution 0.112 0.937 -1.334 1.634 sum -3.857 -13.341 28.257 31.485 Atomic orbital electron populations 1.21764 0.95155 1.01911 1.02333 1.21699 0.96850 0.94192 1.03218 1.22448 0.95304 0.93154 0.86178 0.89190 1.22220 0.94947 1.02980 1.02569 1.86323 1.82220 1.15726 1.36056 1.19607 0.91808 0.84879 0.89281 1.21155 1.02393 0.93076 0.99019 1.20126 0.98030 0.93340 0.94315 1.18168 0.79348 0.81981 0.86388 1.90837 1.43824 1.68588 1.35952 1.47726 1.55810 1.06331 1.23838 1.22512 0.96629 0.98919 0.90276 1.21575 0.97592 0.95283 0.85728 1.22066 0.98309 1.01872 0.95669 1.20540 0.92791 0.95827 0.88008 1.42348 1.14955 1.64784 1.15649 1.19253 0.98981 1.25471 0.93299 0.91127 1.24764 0.96274 1.01363 0.98799 1.69671 1.05600 1.48807 1.34223 0.86161 0.77349 0.79283 0.83245 1.21743 1.21769 1.20744 1.23077 1.03497 1.03359 0.92671 1.22404 0.93419 0.87690 0.98581 1.67118 1.19840 1.11855 1.26506 0.92068 0.92380 0.92827 0.90807 0.89993 0.91842 0.91920 0.91067 0.82956 0.91744 0.89414 0.90441 0.90059 0.89624 0.91918 0.91356 0.96174 0.96389 0.78314 0.93541 0.81840 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.16 0.36 -0.69 16 2 C -0.12 -0.79 5.64 -26.73 -0.15 -0.94 16 3 C 0.09 0.69 2.49 -26.73 -0.07 0.63 16 4 H 0.09 0.76 6.98 -51.93 -0.36 0.39 16 5 C -0.17 -1.22 9.53 37.16 0.35 -0.87 16 6 O -0.30 -3.18 9.30 -18.74 -0.17 -3.35 16 7 C 0.32 3.59 7.45 -17.16 -0.13 3.46 16 8 C -0.13 -1.61 9.61 -38.84 -0.37 -1.99 16 9 C -0.05 -0.53 5.60 -104.67 -0.59 -1.12 16 10 C 0.55 7.67 7.55 -12.19 -0.09 7.58 16 11 O -0.52 -9.24 16.26 5.35 0.09 -9.16 16 12 N -0.60 -7.10 2.87 -182.57 -0.52 -7.63 16 13 C 0.06 0.44 8.67 59.85 0.52 0.96 16 14 C 0.12 1.60 5.38 -4.04 -0.02 1.57 16 15 C -0.14 -2.38 5.65 -26.73 -0.15 -2.54 16 16 C 0.16 3.26 6.26 -4.04 -0.03 3.23 16 17 N -0.73 -19.49 5.60 -59.91 -0.34 -19.82 16 18 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 19 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 22 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 C -0.21 -1.62 7.71 -39.03 -0.30 -1.92 16 27 C 0.13 1.00 11.17 -17.62 -0.20 0.80 16 28 N -0.53 -5.15 8.61 -13.38 -0.12 -5.27 16 29 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.15 1.93 7.85 -52.49 -0.41 1.52 16 38 H 0.06 0.31 7.14 -51.93 -0.37 -0.06 16 39 H 0.09 0.58 5.09 -51.93 -0.26 0.31 16 40 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 41 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.09 1.24 7.53 -51.93 -0.39 0.85 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 10.73 7.67 -40.82 -0.31 10.42 16 48 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.16 0.86 4.15 -52.49 -0.22 0.64 16 50 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 408.77 15.07 6.16 6.16 Total: -1.00 -35.56 408.77 -8.50 -44.06 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.20 Total: 4.97 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.10 Total: 0.51 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.25 Total: -61.11 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.09 Total: -12.50 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.56 -8.50 -44.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322778972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.603 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds