Wall clock time and date at job start Tue Mar 31 2020 18:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47582 * 2 1 4 4 H 1.09004 * 109.46660 * 54.99891 * 3 2 1 5 5 C 1.53002 * 109.47553 * 174.99874 * 3 2 1 6 6 O 1.42900 * 109.47254 * 295.00364 * 3 2 1 7 7 C 1.35680 * 117.00111 * 149.99693 * 6 3 2 8 8 C 1.38894 * 119.62346 * 180.27585 * 7 6 3 9 9 C 1.39580 * 118.94833 * 180.22814 * 8 7 6 10 10 C 1.48158 * 120.89412 * 179.77955 * 9 8 7 11 11 O 1.21520 * 119.99773 * 19.22462 * 10 9 8 12 12 N 1.34769 * 120.00059 * 199.23053 * 10 9 8 13 13 C 1.46497 * 120.00377 * 7.12964 * 12 10 9 14 14 C 1.46509 * 120.00066 * 187.13864 * 12 10 9 15 15 C 1.53002 * 109.46788 * 269.99575 * 14 12 10 16 16 C 1.53000 * 109.46970 * 179.97438 * 15 14 12 17 17 N 1.46500 * 109.46930 * 179.97438 * 16 15 14 18 18 C 1.36937 * 119.99859 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99969 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00149 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99865 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47085 * 90.00018 * 22 20 18 24 24 H 1.48496 * 109.46996 * 209.99846 * 22 20 18 25 25 H 1.48494 * 109.46961 * 329.99895 * 22 20 18 26 26 C 1.39969 * 118.20971 * 359.50249 * 9 8 7 27 27 C 1.37966 * 119.13877 * 0.25377 * 26 9 8 28 28 N 1.31909 * 120.97778 * 359.97438 * 27 26 9 29 29 H 1.09001 * 109.46840 * 59.99205 * 1 2 3 30 30 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47113 * 299.99971 * 1 2 3 32 32 H 1.09004 * 109.47113 * 240.00029 * 2 1 3 33 33 H 1.09002 * 109.47461 * 120.00090 * 2 1 3 34 34 H 1.08998 * 109.46843 * 59.99987 * 5 3 2 35 35 H 1.08995 * 109.47108 * 180.02562 * 5 3 2 36 36 H 1.08993 * 109.46962 * 300.00352 * 5 3 2 37 37 H 1.07997 * 120.52669 * 0.02562 * 8 7 6 38 38 H 1.09001 * 109.47669 * 264.84225 * 13 12 10 39 39 H 1.09007 * 109.46788 * 24.83868 * 13 12 10 40 40 H 1.08997 * 109.47052 * 144.83299 * 13 12 10 41 41 H 1.09001 * 109.47165 * 149.99751 * 14 12 10 42 42 H 1.09003 * 109.47132 * 29.99317 * 14 12 10 43 43 H 1.09000 * 109.47236 * 300.00284 * 15 14 12 44 44 H 1.09001 * 109.47123 * 60.00151 * 15 14 12 45 45 H 1.09003 * 109.47216 * 299.99905 * 16 15 14 46 46 H 1.09001 * 109.46900 * 60.00228 * 16 15 14 47 47 H 0.96989 * 120.00093 * 0.02562 * 17 16 15 48 48 H 0.97000 * 119.99806 * 179.97438 * 21 20 18 49 49 H 1.08001 * 120.42255 * 180.22937 * 26 9 8 50 50 H 1.08007 * 119.51165 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.4507 3.4209 -1.1755 8 6 1.0755 4.0963 -2.3297 9 6 0.8665 5.4750 -2.2680 10 6 0.4701 6.2390 -3.4739 11 8 -0.0120 5.6612 -4.4280 12 7 0.6442 7.5749 -3.5127 13 6 1.3657 8.2512 -2.4319 14 6 0.1119 8.3507 -4.6356 15 6 1.1667 8.4385 -5.7404 16 6 0.6106 9.2482 -6.9134 17 7 1.6209 9.3327 -7.9710 18 6 1.3465 10.0132 -9.1271 19 1 0.3854 10.4880 -9.2592 20 6 2.3035 10.0929 -10.1295 21 7 3.4749 9.5147 -9.9683 22 14 1.9294 11.0219 -11.7063 23 1 2.3325 12.4427 -11.5513 24 1 2.6847 10.4129 -12.8306 25 1 0.4738 10.9485 -11.9906 26 6 1.0356 6.1153 -1.0349 27 6 1.4049 5.3684 0.0648 28 7 1.5984 4.0672 -0.0321 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9995 0.9052 -0.7160 35 1 3.9282 2.4719 0.1262 36 1 3.8532 0.9569 1.0571 37 1 0.9507 3.5637 -3.2609 38 1 0.6523 8.6296 -1.6998 39 1 2.0419 7.5455 -1.9491 40 1 1.9400 9.0817 -2.8425 41 1 -0.1424 9.3546 -4.2955 42 1 -0.7814 7.8615 -5.0242 43 1 2.0600 8.9276 -5.3518 44 1 1.4210 7.4346 -6.0805 45 1 -0.2825 8.7586 -7.3019 46 1 0.3560 10.2521 -6.5736 47 1 2.4838 8.9060 -7.8525 48 1 4.1435 9.5701 -10.6689 49 1 0.8795 7.1802 -0.9457 50 1 1.5368 5.8563 1.0193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322778972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:36 Heat of formation + Delta-G solvation = -36.059852 kcal Electronic energy + Delta-G solvation = -28211.401020 eV Core-core repulsion = 24239.216708 eV Total energy + Delta-G solvation = -3972.184312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.12642 -40.90940 -39.19794 -37.63199 -36.60095 -35.24346 -34.45566 -33.50589 -31.91237 -31.16135 -30.73292 -28.19857 -27.47585 -25.72456 -25.03264 -24.26307 -24.04428 -22.64781 -22.05916 -20.89260 -19.45280 -19.17275 -18.37338 -17.52773 -17.20486 -17.01262 -16.73419 -16.48033 -16.40903 -15.90285 -15.65884 -15.29915 -15.27900 -15.01024 -14.95336 -14.71609 -14.53725 -14.18784 -14.10292 -13.71357 -13.60561 -13.43725 -13.30550 -12.90793 -12.79044 -12.74549 -12.71475 -12.44842 -12.30666 -12.08484 -12.05224 -11.86287 -11.81474 -11.75310 -11.60218 -11.37561 -11.02399 -10.95918 -10.57192 -9.80161 -9.52592 -9.04383 -7.97840 -5.28036 -0.40908 0.08048 1.45511 1.48576 1.56882 1.58578 1.75940 2.09933 2.54626 2.71519 3.17437 3.32119 3.35640 3.74618 3.83443 3.85161 3.92160 3.95376 3.97580 4.06417 4.17583 4.22361 4.32339 4.41084 4.48145 4.54702 4.57808 4.61079 4.65998 4.66071 4.67424 4.73714 4.78662 4.86118 4.92014 4.97177 4.99244 5.02960 5.10614 5.19593 5.26282 5.28386 5.34335 5.37108 5.46511 5.47354 6.20087 6.24154 6.24508 6.73057 6.92813 7.29497 8.05025 8.28087 9.26091 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.001843 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.207787 B =15191.380369 C =15821.534523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.080 3.920 4 H 0.089 0.911 5 C -0.165 4.165 6 O -0.315 6.315 7 C 0.314 3.686 8 C -0.163 4.163 9 C -0.059 4.059 10 C 0.547 3.453 11 O -0.574 6.574 12 N -0.599 5.599 13 C 0.047 3.953 14 C 0.128 3.872 15 C -0.124 4.124 16 C 0.154 3.846 17 N -0.750 5.750 18 C -0.249 4.249 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.980 3.020 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.269 1.269 26 C -0.187 4.187 27 C 0.143 3.857 28 N -0.531 5.531 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.014 0.986 46 H 0.038 0.962 47 H 0.371 0.629 48 H 0.252 0.748 49 H 0.199 0.801 50 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -11.640 32.809 35.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.025 3.975 4 H 0.107 0.893 5 C -0.222 4.222 6 O -0.222 6.222 7 C 0.136 3.864 8 C -0.185 4.185 9 C -0.070 4.070 10 C 0.335 3.665 11 O -0.454 6.454 12 N -0.330 5.330 13 C -0.093 4.093 14 C 0.005 3.995 15 C -0.163 4.163 16 C 0.028 3.972 17 N -0.392 5.392 18 C -0.381 4.381 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.808 3.192 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.194 1.194 26 C -0.206 4.206 27 C -0.012 4.012 28 N -0.256 5.256 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.032 0.968 46 H 0.056 0.944 47 H 0.203 0.797 48 H 0.060 0.940 49 H 0.216 0.784 50 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.359 -12.497 32.717 35.293 hybrid contribution 0.216 0.408 -2.178 2.226 sum -4.142 -12.089 30.539 33.105 Atomic orbital electron populations 1.21750 0.95537 1.02383 1.01376 1.21736 0.96491 0.93321 1.04125 1.22670 0.95939 0.93732 0.85204 0.89272 1.22195 0.94171 1.02350 1.03524 1.86304 1.82381 1.15902 1.37656 1.19573 0.92288 0.85127 0.89381 1.21061 1.04765 0.93915 0.98772 1.20010 0.99382 0.92867 0.94759 1.18660 0.78576 0.82677 0.86547 1.90802 1.46583 1.69860 1.38137 1.47808 1.55270 1.05708 1.24200 1.22912 0.97591 0.99068 0.89771 1.21433 0.95489 0.97202 0.85365 1.21879 0.99684 0.99119 0.95626 1.20719 0.91361 0.97284 0.87880 1.42617 1.15571 1.64475 1.16586 1.19703 0.99182 1.25000 0.94187 0.90309 1.25685 0.96248 1.02879 1.02419 1.69841 1.06632 1.50623 1.35212 0.85046 0.77611 0.77907 0.78628 1.20851 1.22225 1.19383 1.23438 1.01454 1.04857 0.90889 1.23236 0.91077 0.86809 1.00126 1.67235 1.19731 1.13096 1.25523 0.94335 0.91191 0.92429 0.91334 0.87533 0.92372 0.93161 0.88799 0.85500 0.87756 0.88408 0.89700 0.86260 0.91269 0.91211 0.94771 0.96836 0.94371 0.79740 0.93951 0.78436 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.81 71.98 0.71 -1.36 16 2 C -0.12 -1.48 5.64 30.59 0.17 -1.30 16 3 C 0.08 1.28 2.49 30.59 0.08 1.36 16 4 H 0.09 1.42 6.98 -2.38 -0.02 1.40 16 5 C -0.17 -2.26 9.53 71.98 0.69 -1.58 16 6 O -0.31 -7.14 9.30 -89.98 -0.84 -7.98 16 7 C 0.31 7.19 7.45 84.80 0.63 7.82 16 8 C -0.16 -4.23 9.61 22.75 0.22 -4.01 16 9 C -0.06 -1.34 5.60 -19.90 -0.11 -1.45 16 10 C 0.55 15.50 7.55 86.88 0.66 16.16 16 11 O -0.57 -22.17 16.26 -3.78 -0.06 -22.23 16 12 N -0.60 -13.22 2.87 -849.81 -2.44 -15.66 16 13 C 0.05 0.51 8.67 127.77 1.11 1.62 16 14 C 0.13 3.24 5.38 86.38 0.46 3.71 16 15 C -0.12 -4.24 5.65 30.60 0.17 -4.07 16 16 C 0.15 6.41 6.26 86.38 0.54 6.95 16 17 N -0.75 -40.49 5.60 -343.44 -1.92 -42.41 16 18 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 20 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 21 N -0.97 -61.77 13.06 21.65 0.28 -61.49 16 22 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C -0.19 -2.37 7.71 22.62 0.17 -2.19 16 27 C 0.14 1.63 11.17 84.62 0.94 2.58 16 28 N -0.53 -9.55 8.61 -309.15 -2.66 -12.21 16 29 H 0.04 0.68 7.82 -2.39 -0.02 0.67 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.13 3.78 7.85 -2.91 -0.02 3.76 16 38 H 0.10 0.40 7.14 -2.39 -0.02 0.38 16 39 H 0.10 0.91 5.09 -2.38 -0.01 0.90 16 40 H 0.08 0.89 8.11 -2.39 -0.02 0.87 16 41 H 0.12 2.16 8.07 -2.39 -0.02 2.14 16 42 H 0.07 2.01 7.53 -2.39 -0.02 2.00 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.37 21.44 7.67 -92.72 -0.71 20.73 16 48 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.20 1.04 4.15 -2.91 -0.01 1.03 16 50 H 0.21 0.44 8.06 -2.91 -0.02 0.42 16 Total: -1.00 -82.01 408.77 2.35 -79.65 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.22 Total: 26.71 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 7.75 Total: 6.24 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -6.75 Total: -131.77 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.90 Total: -30.21 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -82.01 2.35 -79.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322778972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.591 kcal (2) G-P(sol) polarization free energy of solvation -82.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds