Wall clock time and date at job start Tue Mar 31 2020 18:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 H 1.08998 * 109.47647 * 305.00236 * 3 2 1 5 5 C 1.53001 * 109.46725 * 184.99837 * 3 2 1 6 6 O 1.42899 * 109.46985 * 65.00287 * 3 2 1 7 7 C 1.35686 * 116.99966 * 209.99741 * 6 3 2 8 8 C 1.38890 * 119.62448 * 180.25897 * 7 6 3 9 9 C 1.39579 * 118.94708 * 180.29336 * 8 7 6 10 10 C 1.48158 * 120.89246 * 179.72844 * 9 8 7 11 11 O 1.21516 * 120.00362 * 19.22620 * 10 9 8 12 12 N 1.34779 * 120.00250 * 199.22116 * 10 9 8 13 13 C 1.46502 * 119.99558 * 7.14541 * 12 10 9 14 14 C 1.46496 * 120.00325 * 187.13658 * 12 10 9 15 15 C 1.53000 * 109.47732 * 270.00605 * 14 12 10 16 16 C 1.52997 * 109.47375 * 179.97438 * 15 14 12 17 17 N 1.46496 * 109.47056 * 179.97438 * 16 15 14 18 18 C 1.36942 * 120.00132 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99655 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00201 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99905 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47106 * 90.00092 * 22 20 18 24 24 H 1.48497 * 109.46917 * 209.99659 * 22 20 18 25 25 H 1.48500 * 109.47294 * 329.99530 * 22 20 18 26 26 C 1.39958 * 118.21442 * 359.45787 * 9 8 7 27 27 C 1.37978 * 119.13604 * 0.27093 * 26 9 8 28 28 N 1.31904 * 120.97648 * 0.02562 * 27 26 9 29 29 H 1.09003 * 109.46947 * 59.99810 * 1 2 3 30 30 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47308 * 300.00360 * 1 2 3 32 32 H 1.08999 * 109.46649 * 240.00303 * 2 1 3 33 33 H 1.08995 * 109.46991 * 120.00505 * 2 1 3 34 34 H 1.08992 * 109.47470 * 300.00113 * 5 3 2 35 35 H 1.08997 * 109.47155 * 60.00585 * 5 3 2 36 36 H 1.09006 * 109.46859 * 180.02562 * 5 3 2 37 37 H 1.07998 * 120.53072 * 0.04710 * 8 7 6 38 38 H 1.08999 * 109.46957 * 264.82394 * 13 12 10 39 39 H 1.09000 * 109.46960 * 24.83026 * 13 12 10 40 40 H 1.09003 * 109.46901 * 144.82447 * 13 12 10 41 41 H 1.09002 * 109.46804 * 150.00638 * 14 12 10 42 42 H 1.09003 * 109.47102 * 30.00836 * 14 12 10 43 43 H 1.09003 * 109.47016 * 300.00284 * 15 14 12 44 44 H 1.09001 * 109.46887 * 59.99574 * 15 14 12 45 45 H 1.08996 * 109.47167 * 300.00343 * 16 15 14 46 46 H 1.09002 * 109.46793 * 60.00258 * 16 15 14 47 47 H 0.97005 * 120.00288 * 0.02562 * 17 16 15 48 48 H 0.96998 * 119.99871 * 180.02562 * 21 20 18 49 49 H 1.08006 * 120.43662 * 180.25373 * 26 9 8 50 50 H 1.08007 * 119.51192 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0813 1.2211 7 6 1.4505 3.4209 1.1757 8 6 1.0862 4.0980 2.3324 9 6 0.8662 5.4748 2.2683 10 6 0.4703 6.2388 3.4744 11 8 0.6653 5.7733 4.5797 12 7 -0.1062 7.4503 3.3456 13 6 -0.4841 7.9443 2.0191 14 6 -0.3550 8.2730 4.5319 15 6 -1.7434 7.9555 5.0909 16 6 -2.0029 8.8143 6.3302 17 7 -3.3325 8.5106 6.8651 18 6 -3.7870 9.1620 7.9806 19 1 -3.1653 9.9000 8.4658 20 6 -5.0466 8.8740 8.4877 21 7 -5.8044 7.9750 7.8960 22 14 -5.6667 9.7631 10.0089 23 1 -6.3855 10.9974 9.6023 24 1 -6.5920 8.8756 10.7582 25 1 -4.5159 10.1231 10.8756 26 6 1.0354 6.1152 1.0354 27 6 1.4048 5.3685 -0.0644 28 7 1.5983 4.0673 0.0324 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9994 0.9053 0.7160 35 1 3.8532 0.9571 -1.0571 36 1 3.9282 2.4720 -0.1252 37 1 0.9710 3.5670 3.2657 38 1 0.3138 8.5734 1.6248 39 1 -0.6456 7.0996 1.3493 40 1 -1.4019 8.5272 2.0965 41 1 -0.3053 9.3273 4.2597 42 1 0.3994 8.0571 5.2885 43 1 -2.4978 8.1713 4.3343 44 1 -1.7930 6.9011 5.3630 45 1 -1.2484 8.5980 7.0866 46 1 -1.9531 9.8687 6.0584 47 1 -3.8910 7.8481 6.4290 48 1 -6.6847 7.7740 8.2502 49 1 0.8786 7.1801 0.9459 50 1 1.5374 5.8565 -1.0188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322778992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:40 Heat of formation + Delta-G solvation = -11.478613 kcal Electronic energy + Delta-G solvation = -28226.550638 eV Core-core repulsion = 24255.432249 eV Total energy + Delta-G solvation = -3971.118390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.32227 -39.99379 -38.42854 -36.34233 -35.03414 -34.55814 -33.22439 -32.04598 -30.92380 -30.17392 -29.62817 -27.35770 -26.11088 -24.61671 -24.09098 -23.44408 -22.72300 -21.46238 -20.91293 -20.04486 -18.60729 -17.56164 -17.03859 -16.68251 -16.31333 -16.08861 -15.92251 -15.38651 -14.99374 -14.67933 -14.49724 -14.37232 -14.26290 -14.14169 -13.76804 -13.53847 -13.38696 -13.24349 -13.03688 -12.95464 -12.79172 -12.34764 -12.13611 -12.02026 -11.92705 -11.62696 -11.48812 -11.15240 -10.98685 -10.92503 -10.83821 -10.74814 -10.42148 -10.34240 -10.20797 -10.04516 -9.75131 -9.68431 -8.85537 -8.83714 -8.76133 -6.88412 -5.72728 -3.01506 0.42536 0.79607 2.46868 2.67522 2.90363 3.46145 3.48634 3.50899 3.53215 3.87778 4.09249 4.33051 4.53417 4.54854 4.59585 4.62872 4.68266 4.78395 4.91259 4.98486 5.03524 5.12684 5.17531 5.20225 5.31014 5.34271 5.36873 5.39601 5.46485 5.56007 5.57040 5.59376 5.66055 5.68138 5.71877 5.76068 5.88151 5.92594 6.01852 6.07221 6.30462 6.40160 6.45529 6.87886 6.89580 6.93761 7.16424 7.44760 7.73086 7.94267 8.46191 9.56922 10.15619 10.50095 11.50353 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.001889 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.596791 B =14821.531442 C =15767.105966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.169 4.169 6 O -0.296 6.296 7 C 0.323 3.677 8 C -0.135 4.135 9 C -0.047 4.047 10 C 0.554 3.446 11 O -0.517 6.517 12 N -0.605 5.605 13 C 0.059 3.941 14 C 0.120 3.880 15 C -0.140 4.140 16 C 0.157 3.843 17 N -0.733 5.733 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.206 4.206 27 C 0.134 3.866 28 N -0.529 5.529 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.153 0.847 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.165 0.835 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.923 -9.625 -24.657 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.108 0.892 5 C -0.227 4.227 6 O -0.203 6.203 7 C 0.144 3.856 8 C -0.156 4.156 9 C -0.058 4.058 10 C 0.341 3.659 11 O -0.392 6.392 12 N -0.337 5.337 13 C -0.083 4.083 14 C -0.002 4.002 15 C -0.179 4.179 16 C 0.028 3.972 17 N -0.377 5.377 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.226 4.226 27 C -0.021 4.021 28 N -0.253 5.253 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.170 0.830 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.182 0.818 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 19.244 -10.427 -24.408 32.784 hybrid contribution -0.840 0.782 1.122 1.604 sum 18.405 -9.645 -23.286 31.209 Atomic orbital electron populations 1.21767 0.95078 1.01973 1.02392 1.21697 0.96917 0.94142 1.03180 1.22449 0.95243 0.93201 0.86208 0.89153 1.22219 0.95009 1.02904 1.02539 1.86325 1.82217 1.15727 1.36051 1.19608 0.91820 0.84882 0.89270 1.21153 1.02513 0.93159 0.98818 1.20122 0.98151 0.93415 0.94121 1.18170 0.78327 0.81134 0.88255 1.90836 1.54214 1.67647 1.26498 1.47727 1.59957 1.17405 1.08622 1.22512 1.00966 1.00674 0.84183 1.21571 0.98494 0.93800 0.86313 1.22065 0.95337 1.01838 0.98673 1.20537 0.89019 0.95473 0.92133 1.42352 1.13970 1.48846 1.32575 1.19252 0.98612 1.16250 1.02876 0.91128 1.24764 0.97153 0.99632 0.99662 1.69669 1.10823 1.35809 1.42003 0.86161 0.78449 0.78720 0.82706 1.21745 1.21769 1.20742 1.23079 1.03355 1.03563 0.92603 1.22407 0.93109 0.87787 0.98793 1.67117 1.19686 1.11902 1.26608 0.92786 0.92349 0.92035 0.90004 0.90837 0.91893 0.91063 0.91979 0.82955 0.91746 0.89412 0.90441 0.90061 0.89627 0.91919 0.91356 0.96174 0.96393 0.78311 0.93539 0.81839 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.81 37.16 0.36 -0.74 16 2 C -0.12 -0.80 5.64 -26.73 -0.15 -0.95 16 3 C 0.09 0.69 2.49 -26.73 -0.07 0.63 16 4 H 0.09 0.76 6.98 -51.93 -0.36 0.40 16 5 C -0.17 -1.19 9.53 37.16 0.35 -0.83 16 6 O -0.30 -3.17 9.30 -18.76 -0.17 -3.35 16 7 C 0.32 3.59 7.45 -17.16 -0.13 3.46 16 8 C -0.13 -1.61 9.61 -38.84 -0.37 -1.99 16 9 C -0.05 -0.53 5.60 -104.68 -0.59 -1.12 16 10 C 0.55 7.67 7.55 -12.19 -0.09 7.58 16 11 O -0.52 -9.24 16.26 5.35 0.09 -9.16 16 12 N -0.60 -7.10 2.87 -182.57 -0.52 -7.63 16 13 C 0.06 0.44 8.67 59.85 0.52 0.96 16 14 C 0.12 1.60 5.38 -4.04 -0.02 1.57 16 15 C -0.14 -2.38 5.65 -26.73 -0.15 -2.53 16 16 C 0.16 3.26 6.26 -4.05 -0.03 3.23 16 17 N -0.73 -19.49 5.60 -59.91 -0.34 -19.82 16 18 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 19 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 20 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -29.11 13.06 55.49 0.72 -28.39 16 22 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 C -0.21 -1.62 7.71 -39.03 -0.30 -1.92 16 27 C 0.13 1.00 11.17 -17.62 -0.20 0.80 16 28 N -0.53 -5.15 8.61 -13.38 -0.12 -5.26 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.15 1.93 7.85 -52.49 -0.41 1.52 16 38 H 0.06 0.31 7.14 -51.93 -0.37 -0.06 16 39 H 0.09 0.58 5.09 -51.93 -0.26 0.31 16 40 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 41 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.09 1.24 7.53 -51.93 -0.39 0.85 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 10.73 7.67 -40.82 -0.31 10.41 16 48 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.16 0.86 4.15 -52.48 -0.22 0.64 16 50 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 408.77 15.07 6.16 6.16 Total: -1.00 -35.55 408.77 -8.50 -44.06 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.20 Total: 5.00 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.10 Total: 0.48 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.25 Total: -61.10 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.09 Total: -12.51 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.55 -8.50 -44.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322778992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.577 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds