Wall clock time and date at job start Tue Mar 31 2020 18:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 H 1.08998 * 109.47647 * 305.00236 * 3 2 1 5 5 C 1.53001 * 109.46725 * 184.99837 * 3 2 1 6 6 O 1.42899 * 109.46985 * 65.00287 * 3 2 1 7 7 C 1.35686 * 116.99966 * 209.99741 * 6 3 2 8 8 C 1.38890 * 119.62448 * 180.25897 * 7 6 3 9 9 C 1.39579 * 118.94708 * 180.29336 * 8 7 6 10 10 C 1.48158 * 120.89246 * 179.72844 * 9 8 7 11 11 O 1.21516 * 120.00362 * 19.22620 * 10 9 8 12 12 N 1.34779 * 120.00250 * 199.22116 * 10 9 8 13 13 C 1.46502 * 119.99558 * 7.14541 * 12 10 9 14 14 C 1.46496 * 120.00325 * 187.13658 * 12 10 9 15 15 C 1.53000 * 109.47732 * 270.00605 * 14 12 10 16 16 C 1.52997 * 109.47375 * 179.97438 * 15 14 12 17 17 N 1.46496 * 109.47056 * 179.97438 * 16 15 14 18 18 C 1.36942 * 120.00132 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99655 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00201 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99905 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47106 * 90.00092 * 22 20 18 24 24 H 1.48497 * 109.46917 * 209.99659 * 22 20 18 25 25 H 1.48500 * 109.47294 * 329.99530 * 22 20 18 26 26 C 1.39958 * 118.21442 * 359.45787 * 9 8 7 27 27 C 1.37978 * 119.13604 * 0.27093 * 26 9 8 28 28 N 1.31904 * 120.97648 * 0.02562 * 27 26 9 29 29 H 1.09003 * 109.46947 * 59.99810 * 1 2 3 30 30 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47308 * 300.00360 * 1 2 3 32 32 H 1.08999 * 109.46649 * 240.00303 * 2 1 3 33 33 H 1.08995 * 109.46991 * 120.00505 * 2 1 3 34 34 H 1.08992 * 109.47470 * 300.00113 * 5 3 2 35 35 H 1.08997 * 109.47155 * 60.00585 * 5 3 2 36 36 H 1.09006 * 109.46859 * 180.02562 * 5 3 2 37 37 H 1.07998 * 120.53072 * 0.04710 * 8 7 6 38 38 H 1.08999 * 109.46957 * 264.82394 * 13 12 10 39 39 H 1.09000 * 109.46960 * 24.83026 * 13 12 10 40 40 H 1.09003 * 109.46901 * 144.82447 * 13 12 10 41 41 H 1.09002 * 109.46804 * 150.00638 * 14 12 10 42 42 H 1.09003 * 109.47102 * 30.00836 * 14 12 10 43 43 H 1.09003 * 109.47016 * 300.00284 * 15 14 12 44 44 H 1.09001 * 109.46887 * 59.99574 * 15 14 12 45 45 H 1.08996 * 109.47167 * 300.00343 * 16 15 14 46 46 H 1.09002 * 109.46793 * 60.00258 * 16 15 14 47 47 H 0.97005 * 120.00288 * 0.02562 * 17 16 15 48 48 H 0.96998 * 119.99871 * 180.02562 * 21 20 18 49 49 H 1.08006 * 120.43662 * 180.25373 * 26 9 8 50 50 H 1.08007 * 119.51192 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0813 1.2211 7 6 1.4505 3.4209 1.1757 8 6 1.0862 4.0980 2.3324 9 6 0.8662 5.4748 2.2683 10 6 0.4703 6.2388 3.4744 11 8 0.6653 5.7733 4.5797 12 7 -0.1062 7.4503 3.3456 13 6 -0.4841 7.9443 2.0191 14 6 -0.3550 8.2730 4.5319 15 6 -1.7434 7.9555 5.0909 16 6 -2.0029 8.8143 6.3302 17 7 -3.3325 8.5106 6.8651 18 6 -3.7870 9.1620 7.9806 19 1 -3.1653 9.9000 8.4658 20 6 -5.0466 8.8740 8.4877 21 7 -5.8044 7.9750 7.8960 22 14 -5.6667 9.7631 10.0089 23 1 -6.3855 10.9974 9.6023 24 1 -6.5920 8.8756 10.7582 25 1 -4.5159 10.1231 10.8756 26 6 1.0354 6.1152 1.0354 27 6 1.4048 5.3685 -0.0644 28 7 1.5983 4.0673 0.0324 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9994 0.9053 0.7160 35 1 3.8532 0.9571 -1.0571 36 1 3.9282 2.4720 -0.1252 37 1 0.9710 3.5670 3.2657 38 1 0.3138 8.5734 1.6248 39 1 -0.6456 7.0996 1.3493 40 1 -1.4019 8.5272 2.0965 41 1 -0.3053 9.3273 4.2597 42 1 0.3994 8.0571 5.2885 43 1 -2.4978 8.1713 4.3343 44 1 -1.7930 6.9011 5.3630 45 1 -1.2484 8.5980 7.0866 46 1 -1.9531 9.8687 6.0584 47 1 -3.8910 7.8481 6.4290 48 1 -6.6847 7.7740 8.2502 49 1 0.8786 7.1801 0.9459 50 1 1.5374 5.8565 -1.0188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322778992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:39 Heat of formation + Delta-G solvation = -36.083097 kcal Electronic energy + Delta-G solvation = -28227.617569 eV Core-core repulsion = 24255.432249 eV Total energy + Delta-G solvation = -3972.185320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.12646 -40.90927 -39.19788 -37.63256 -36.60094 -35.24368 -34.45604 -33.50652 -31.91221 -31.16134 -30.73272 -28.19810 -27.47605 -25.72494 -25.03208 -24.26309 -24.04470 -22.64776 -22.05968 -20.89299 -19.44849 -19.17316 -18.37996 -17.52514 -17.19565 -16.97343 -16.81231 -16.50772 -16.34854 -15.90366 -15.65950 -15.32327 -15.23969 -15.01774 -14.93914 -14.76514 -14.52156 -14.16335 -14.12519 -13.72011 -13.58479 -13.43530 -13.30178 -12.93544 -12.79084 -12.74783 -12.70241 -12.44677 -12.29589 -12.08529 -12.05873 -11.86067 -11.81655 -11.77056 -11.60154 -11.36014 -11.04225 -10.95975 -10.55437 -9.80238 -9.52869 -9.04407 -7.97860 -5.28067 -0.40889 0.08047 1.45473 1.48547 1.56869 1.58740 1.75719 2.10014 2.54583 2.71522 3.17422 3.32166 3.35597 3.74599 3.83418 3.85182 3.92162 3.95381 3.97580 4.06414 4.17562 4.22413 4.32378 4.41066 4.48141 4.54687 4.57850 4.61086 4.65848 4.66023 4.67442 4.73705 4.78853 4.86128 4.92051 4.97156 4.99167 5.02829 5.10507 5.19470 5.26285 5.28384 5.34299 5.37091 5.46499 5.47395 6.20071 6.24165 6.24523 6.73067 6.92808 7.29463 8.04987 8.28013 9.26083 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.001889 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.596791 B =14821.531442 C =15767.105966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.080 3.920 4 H 0.089 0.911 5 C -0.164 4.164 6 O -0.315 6.315 7 C 0.314 3.686 8 C -0.163 4.163 9 C -0.059 4.059 10 C 0.547 3.453 11 O -0.574 6.574 12 N -0.599 5.599 13 C 0.047 3.953 14 C 0.128 3.872 15 C -0.124 4.124 16 C 0.154 3.846 17 N -0.750 5.750 18 C -0.249 4.249 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.980 3.020 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.269 1.269 26 C -0.187 4.187 27 C 0.143 3.857 28 N -0.531 5.531 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.014 0.986 46 H 0.038 0.962 47 H 0.371 0.629 48 H 0.252 0.748 49 H 0.199 0.801 50 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.979 -7.630 -27.417 34.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C 0.024 3.976 4 H 0.107 0.893 5 C -0.221 4.221 6 O -0.222 6.222 7 C 0.136 3.864 8 C -0.185 4.185 9 C -0.070 4.070 10 C 0.335 3.665 11 O -0.454 6.454 12 N -0.330 5.330 13 C -0.093 4.093 14 C 0.005 3.995 15 C -0.163 4.163 16 C 0.028 3.972 17 N -0.393 5.393 18 C -0.380 4.380 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.808 3.192 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.194 1.194 26 C -0.206 4.206 27 C -0.012 4.012 28 N -0.256 5.256 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.145 0.855 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.032 0.968 46 H 0.056 0.944 47 H 0.203 0.797 48 H 0.061 0.939 49 H 0.216 0.784 50 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 20.336 -8.402 -27.211 34.994 hybrid contribution -1.130 0.187 1.880 2.201 sum 19.206 -8.215 -25.331 32.833 Atomic orbital electron populations 1.21757 0.95675 1.02355 1.01358 1.21733 0.96357 0.93383 1.04149 1.22672 0.96023 0.93687 0.85204 0.89313 1.22189 0.94055 1.02342 1.03553 1.86306 1.82386 1.15903 1.37651 1.19574 0.92307 0.85129 0.89362 1.21059 1.04889 0.94019 0.98552 1.20006 0.99494 0.92942 0.94575 1.18664 0.77873 0.81588 0.88337 1.90800 1.56751 1.69084 1.28744 1.47809 1.58745 1.16500 1.09936 1.22913 1.02803 1.01709 0.81917 1.21429 0.95262 0.95897 0.86902 1.21878 0.98146 0.98913 0.97368 1.20715 0.86136 0.97111 0.93277 1.42622 1.15808 1.48465 1.32364 1.19702 0.98832 1.16064 1.03448 0.90311 1.25687 0.97599 1.00867 1.03107 1.69840 1.11050 1.37645 1.43776 0.85046 0.77896 0.77398 0.78850 1.20851 1.22224 1.19381 1.23439 1.01318 1.05061 0.90817 1.23240 0.90755 0.86904 1.00349 1.67234 1.19590 1.13136 1.25618 0.92449 0.91259 0.94393 0.87504 0.91278 0.92286 0.88796 0.93156 0.85502 0.87759 0.88403 0.89697 0.86263 0.91274 0.91209 0.94772 0.96838 0.94374 0.79736 0.93947 0.78435 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.81 71.98 0.71 -1.50 16 2 C -0.12 -1.50 5.64 30.59 0.17 -1.32 16 3 C 0.08 1.27 2.49 30.59 0.08 1.35 16 4 H 0.09 1.42 6.98 -2.39 -0.02 1.41 16 5 C -0.16 -2.17 9.53 71.98 0.69 -1.48 16 6 O -0.31 -7.14 9.30 -90.05 -0.84 -7.98 16 7 C 0.31 7.19 7.45 84.80 0.63 7.82 16 8 C -0.16 -4.23 9.61 22.75 0.22 -4.01 16 9 C -0.06 -1.34 5.60 -19.90 -0.11 -1.45 16 10 C 0.55 15.50 7.55 86.88 0.66 16.16 16 11 O -0.57 -22.18 16.26 -3.77 -0.06 -22.24 16 12 N -0.60 -13.22 2.87 -849.83 -2.44 -15.66 16 13 C 0.05 0.51 8.67 127.77 1.11 1.62 16 14 C 0.13 3.24 5.38 86.38 0.46 3.71 16 15 C -0.12 -4.24 5.65 30.59 0.17 -4.06 16 16 C 0.15 6.41 6.26 86.38 0.54 6.95 16 17 N -0.75 -40.49 5.60 -343.46 -1.92 -42.41 16 18 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 20 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 21 N -0.97 -61.77 13.06 21.65 0.28 -61.49 16 22 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C -0.19 -2.37 7.71 22.62 0.17 -2.19 16 27 C 0.14 1.63 11.17 84.62 0.94 2.58 16 28 N -0.53 -9.54 8.61 -309.14 -2.66 -12.20 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 0.71 7.82 -2.39 -0.02 0.69 16 32 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.13 3.78 7.85 -2.91 -0.02 3.76 16 38 H 0.10 0.40 7.14 -2.39 -0.02 0.38 16 39 H 0.10 0.91 5.09 -2.39 -0.01 0.90 16 40 H 0.08 0.89 8.11 -2.39 -0.02 0.87 16 41 H 0.12 2.16 8.07 -2.39 -0.02 2.14 16 42 H 0.07 2.01 7.53 -2.39 -0.02 2.00 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.37 21.44 7.67 -92.70 -0.71 20.73 16 48 H 0.25 15.41 8.31 -92.71 -0.77 14.63 16 49 H 0.20 1.04 4.15 -2.91 -0.01 1.03 16 50 H 0.21 0.44 8.06 -2.91 -0.02 0.42 16 Total: -1.00 -82.02 408.77 2.35 -79.67 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.22 Total: 26.77 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 7.75 Total: 6.17 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -6.75 Total: -131.77 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.90 Total: -30.21 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -82.02 2.35 -79.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322778992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.586 kcal (2) G-P(sol) polarization free energy of solvation -82.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds