Wall clock time and date at job start Tue Mar 31 2020 18:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47083 * 65.56809 * 3 2 1 5 5 C 1.46851 * 111.00015 * 169.99352 * 4 3 2 6 6 C 1.53033 * 109.52488 * 185.83851 * 5 4 3 7 7 C 1.53117 * 109.28166 * 300.82779 * 6 5 4 8 8 C 1.50704 * 109.52436 * 177.55943 * 7 6 5 9 9 O 1.21279 * 119.99866 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00093 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99941 * 174.77243 * 10 8 7 12 12 C 1.52999 * 112.94403 * 295.26296 * 11 10 8 13 13 C 1.53001 * 109.47548 * 304.05168 * 12 11 10 14 14 O 1.42897 * 109.47148 * 178.30695 * 13 12 11 15 15 C 1.53941 * 113.73872 * 163.67579 * 11 10 8 16 16 N 1.47814 * 86.03635 * 222.08309 * 15 11 10 17 17 C 1.36933 * 134.45995 * 204.64476 * 16 15 11 18 18 H 1.08004 * 120.00278 * 179.86807 * 17 16 15 19 19 C 1.38815 * 119.99793 * 359.86681 * 17 16 15 20 20 N 1.31615 * 120.00047 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99769 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47303 * 89.99801 * 21 19 17 23 23 H 1.48499 * 109.47143 * 209.99899 * 21 19 17 24 24 H 1.48504 * 109.47509 * 330.00137 * 21 19 17 25 25 C 1.47579 * 91.04861 * 24.54855 * 16 15 11 26 26 C 1.53120 * 109.16285 * 57.65066 * 7 6 5 27 27 C 1.46846 * 111.00546 * 294.20880 * 4 3 2 28 28 H 4.40881 * 5.52086 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47285 * 305.57210 * 3 2 1 30 30 H 1.09003 * 109.46979 * 185.56654 * 3 2 1 31 31 H 1.09005 * 109.45706 * 65.82861 * 5 4 3 32 32 H 1.08996 * 109.46587 * 305.86444 * 5 4 3 33 33 H 1.09004 * 109.50343 * 60.76835 * 6 5 4 34 34 H 1.09005 * 109.50248 * 180.88369 * 6 5 4 35 35 H 1.09005 * 109.52041 * 297.74835 * 7 6 5 36 36 H 0.97003 * 119.99457 * 354.77747 * 10 8 7 37 37 H 1.09004 * 109.46994 * 64.05519 * 12 11 10 38 38 H 1.09003 * 109.47188 * 184.05241 * 12 11 10 39 39 H 1.08993 * 109.46945 * 298.30918 * 13 12 11 40 40 H 1.09008 * 109.46924 * 58.30515 * 13 12 11 41 41 H 0.96702 * 114.00011 * 180.02562 * 14 13 12 42 42 H 1.08998 * 113.77449 * 336.34590 * 15 11 10 43 43 H 1.09005 * 113.77199 * 107.74908 * 15 11 10 44 44 H 0.97002 * 119.99578 * 180.02562 * 20 19 17 45 45 H 1.09004 * 113.77247 * 221.15519 * 25 16 15 46 46 H 1.09004 * 113.87286 * 89.77099 * 25 16 15 47 47 H 1.08998 * 109.49796 * 62.28855 * 26 7 6 48 48 H 1.08995 * 109.50365 * 182.40714 * 26 7 6 49 49 H 1.09000 * 109.45705 * 54.14136 * 27 4 3 50 50 H 1.08998 * 109.45119 * 294.17632 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1359 -0.5720 -1.2610 5 6 4.5842 -0.3735 -1.4015 6 6 5.0339 -0.8499 -2.7845 7 6 4.6847 -2.3319 -2.9471 8 6 5.0709 -2.7917 -4.3293 9 8 5.5754 -2.0116 -5.1089 10 7 4.8556 -4.0697 -4.6991 11 6 5.1241 -4.4887 -6.0769 12 6 4.2111 -3.8052 -7.0968 13 6 2.7492 -4.0605 -6.7247 14 8 1.8967 -3.3894 -7.6546 15 6 5.2171 -6.0151 -6.2535 16 7 6.3724 -5.7399 -7.1335 17 6 6.9740 -6.4108 -8.1645 18 1 7.8309 -5.9807 -8.6617 19 6 6.4825 -7.6439 -8.5707 20 7 5.4386 -8.1683 -7.9645 21 14 7.3028 -8.5588 -9.9776 22 1 8.3701 -9.4401 -9.4395 23 1 6.2922 -9.3827 -10.6883 24 1 7.8984 -7.5812 -10.9235 25 6 6.6154 -4.4511 -6.4568 26 6 3.1779 -2.5179 -2.7482 27 6 2.7820 -1.9933 -1.3663 28 1 -1.0498 0.0001 -0.0002 29 1 3.0097 -0.5970 0.8359 30 1 3.0089 1.0237 0.0997 31 1 5.1052 -0.9451 -0.6334 32 1 4.8185 0.6849 -1.2880 33 1 4.5235 -0.2694 -3.5531 34 1 6.1113 -0.7170 -2.8827 35 1 5.2253 -2.9172 -2.2032 36 1 4.5228 -4.7120 -4.0528 37 1 4.4043 -2.7324 -7.0958 38 1 4.4091 -4.2090 -8.0898 39 1 2.5483 -5.1313 -6.7550 40 1 2.5590 -3.6835 -5.7197 41 1 0.9531 -3.5074 -7.4791 42 1 5.4784 -6.5481 -5.3393 43 1 4.3625 -6.4504 -6.7717 44 1 5.0954 -9.0301 -8.2482 45 1 6.8752 -3.6398 -7.1368 46 1 7.2884 -4.5216 -5.6022 47 1 2.6384 -1.9637 -3.5162 48 1 2.9293 -3.5767 -2.8204 49 1 1.7074 -2.1111 -1.2271 50 1 3.3116 -2.5570 -0.5983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329717145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:39 Heat of formation + Delta-G solvation = 25.851285 kcal Electronic energy + Delta-G solvation = -29923.093579 eV Core-core repulsion = 25953.593935 eV Total energy + Delta-G solvation = -3969.499644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.39141 -39.13788 -37.67313 -36.35412 -34.71762 -33.65609 -32.49930 -31.73281 -31.00328 -30.26836 -27.73453 -26.94706 -25.04229 -24.26844 -23.43710 -23.08687 -21.67051 -20.64230 -19.60095 -18.60017 -18.44361 -17.27352 -16.89211 -16.77338 -16.16583 -15.56287 -15.46705 -15.13305 -14.93397 -14.71572 -14.45464 -14.04745 -13.98310 -13.79978 -13.61301 -13.32038 -13.10081 -12.96637 -12.48447 -12.31820 -11.91301 -11.69753 -11.61391 -11.51763 -11.36601 -11.05320 -10.96208 -10.92573 -10.77912 -10.74109 -10.67893 -10.61311 -10.41920 -10.14786 -9.87996 -9.65994 -9.53317 -9.11968 -8.88627 -8.70002 -8.54958 -6.92410 -5.80455 -3.11994 2.39166 2.55545 2.93919 3.38254 3.43100 3.45903 3.49458 3.70453 4.07852 4.44011 4.49740 4.50909 4.57811 4.72733 4.91521 4.97994 5.03113 5.10287 5.17614 5.22374 5.26028 5.30481 5.34919 5.48466 5.50140 5.55087 5.57501 5.63887 5.72100 5.75461 5.81835 5.89746 5.96509 6.02007 6.24016 6.36245 6.50235 6.53051 6.65703 6.67168 6.73290 6.77758 6.86230 7.12018 7.32976 7.33159 7.48475 7.87516 7.91711 7.95055 8.59522 9.01729 9.67776 10.54422 11.37252 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.002549 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.433767 B =10983.934003 C =11499.567649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.162 3.838 4 N -0.536 5.536 5 C 0.057 3.943 6 C -0.095 4.095 7 C -0.110 4.110 8 C 0.517 3.483 9 O -0.533 6.533 10 N -0.716 5.716 11 C 0.124 3.876 12 C -0.094 4.094 13 C 0.083 3.917 14 O -0.575 6.575 15 C 0.167 3.833 16 N -0.606 5.606 17 C -0.218 4.218 18 H 0.082 0.918 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.129 3.871 26 C -0.106 4.106 27 C 0.058 3.942 28 H 0.217 0.783 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.395 0.605 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.371 0.629 42 H 0.030 0.970 43 H 0.081 0.919 44 H 0.254 0.746 45 H 0.051 0.949 46 H 0.035 0.965 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 13.145 18.238 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.181 4.181 3 C 0.036 3.964 4 N -0.261 5.261 5 C -0.070 4.070 6 C -0.133 4.133 7 C -0.132 4.132 8 C 0.302 3.698 9 O -0.409 6.409 10 N -0.368 5.368 11 C 0.038 3.962 12 C -0.133 4.133 13 C 0.005 3.995 14 O -0.379 6.379 15 C 0.040 3.960 16 N -0.332 5.332 17 C -0.346 4.346 18 H 0.100 0.900 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.002 3.998 26 C -0.144 4.144 27 C -0.070 4.070 28 H 0.234 0.766 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.229 0.771 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.217 0.783 42 H 0.047 0.953 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.251 13.861 16.760 23.262 hybrid contribution -0.016 -1.666 0.707 1.810 sum -8.267 12.195 17.467 22.851 Atomic orbital electron populations 1.24909 0.95918 1.00842 0.99940 1.22828 0.94189 1.00451 1.00595 1.18985 0.85229 1.01066 0.91161 1.61889 1.14531 1.16407 1.33310 1.22154 0.86112 1.01391 0.97372 1.21385 1.01789 0.93734 0.96394 1.21417 0.97632 0.98604 0.95508 1.20453 0.78183 0.82245 0.88916 1.90688 1.42601 1.53719 1.53912 1.46221 1.67491 1.10336 1.12703 1.22898 0.96064 0.97730 0.79499 1.21311 0.90994 1.01338 0.99614 1.22127 0.91000 0.95569 0.90779 1.86501 1.19805 1.76000 1.55594 1.22571 0.92764 0.87725 0.92897 1.45733 1.33601 1.18992 1.34889 1.19007 1.09919 0.99685 1.05948 0.90023 1.24769 0.98432 0.97362 0.99843 1.69784 1.25345 1.18763 1.43147 0.86095 0.78280 0.79655 0.81609 1.21655 1.21608 1.20536 1.22779 0.92391 0.89652 0.94948 1.21569 0.94010 1.01339 0.97484 1.22108 1.01100 0.87063 0.96708 0.76649 0.92482 0.88421 0.94527 0.90143 0.90035 0.90486 0.89124 0.77108 0.90926 0.89260 0.93370 0.94549 0.78293 0.95276 0.90084 0.93627 0.93082 0.94777 0.90368 0.90770 0.90349 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 19.25 29.55 0.57 -0.99 16 2 C -0.18 -1.59 12.34 -37.12 -0.46 -2.05 16 3 C 0.16 1.20 5.46 -6.61 -0.04 1.17 16 4 N -0.54 -4.70 4.63 -238.18 -1.10 -5.80 16 5 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 6 C -0.09 -0.99 4.68 -26.65 -0.12 -1.11 16 7 C -0.11 -1.15 2.59 -91.65 -0.24 -1.39 16 8 C 0.52 7.54 6.81 -10.98 -0.07 7.46 16 9 O -0.53 -9.87 14.37 5.56 0.08 -9.79 16 10 N -0.72 -10.46 4.41 -49.08 -0.22 -10.68 16 11 C 0.12 2.34 0.67 -134.04 -0.09 2.25 16 12 C -0.09 -1.82 4.81 -26.73 -0.13 -1.95 16 13 C 0.08 1.34 6.83 37.16 0.25 1.60 16 14 O -0.57 -9.23 13.66 -35.23 -0.48 -9.71 16 15 C 0.17 3.72 6.69 -2.84 -0.02 3.70 16 16 N -0.61 -15.48 3.55 -177.51 -0.63 -16.11 16 17 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 18 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -26.72 11.39 55.49 0.63 -26.09 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.13 2.83 7.55 -2.97 -0.02 2.81 16 26 C -0.11 -0.98 5.27 -26.65 -0.14 -1.12 16 27 C 0.06 0.49 5.30 -3.84 -0.02 0.47 16 28 H 0.22 1.01 7.80 -54.10 -0.42 0.59 16 29 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.10 0.60 7.99 -51.93 -0.41 0.19 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.56 8.01 -51.93 -0.42 0.15 16 33 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.40 4.71 8.36 -40.82 -0.34 4.37 16 37 H 0.07 1.48 7.09 -51.93 -0.37 1.12 16 38 H 0.09 2.01 8.02 -51.93 -0.42 1.59 16 39 H 0.05 0.79 7.53 -51.93 -0.39 0.40 16 40 H 0.04 0.52 7.63 -51.92 -0.40 0.12 16 41 H 0.37 3.96 9.12 45.56 0.42 4.38 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.98 6.55 -51.93 -0.34 1.64 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 49 H 0.08 0.68 7.11 -51.93 -0.37 0.31 16 50 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -34.25 403.21 -9.10 -43.35 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.63 Total: 6.92 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -0.81 Total: 4.69 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -1.32 Total: -58.69 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.40 Total: -19.50 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.25 -9.10 -43.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329717145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.201 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds