Wall clock time and date at job start Tue Mar 31 2020 18:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47083 * 65.56809 * 3 2 1 5 5 C 1.46851 * 111.00015 * 169.99352 * 4 3 2 6 6 C 1.53033 * 109.52488 * 185.83851 * 5 4 3 7 7 C 1.53117 * 109.28166 * 300.82779 * 6 5 4 8 8 C 1.50704 * 109.52436 * 177.55943 * 7 6 5 9 9 O 1.21279 * 119.99866 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00093 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99941 * 174.77243 * 10 8 7 12 12 C 1.52999 * 112.94403 * 295.26296 * 11 10 8 13 13 C 1.53001 * 109.47548 * 304.05168 * 12 11 10 14 14 O 1.42897 * 109.47148 * 178.30695 * 13 12 11 15 15 C 1.53941 * 113.73872 * 163.67579 * 11 10 8 16 16 N 1.47814 * 86.03635 * 222.08309 * 15 11 10 17 17 C 1.36933 * 134.45995 * 204.64476 * 16 15 11 18 18 H 1.08004 * 120.00278 * 179.86807 * 17 16 15 19 19 C 1.38815 * 119.99793 * 359.86681 * 17 16 15 20 20 N 1.31615 * 120.00047 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99769 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47303 * 89.99801 * 21 19 17 23 23 H 1.48499 * 109.47143 * 209.99899 * 21 19 17 24 24 H 1.48504 * 109.47509 * 330.00137 * 21 19 17 25 25 C 1.47579 * 91.04861 * 24.54855 * 16 15 11 26 26 C 1.53120 * 109.16285 * 57.65066 * 7 6 5 27 27 C 1.46846 * 111.00546 * 294.20880 * 4 3 2 28 28 H 4.40881 * 5.52086 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47285 * 305.57210 * 3 2 1 30 30 H 1.09003 * 109.46979 * 185.56654 * 3 2 1 31 31 H 1.09005 * 109.45706 * 65.82861 * 5 4 3 32 32 H 1.08996 * 109.46587 * 305.86444 * 5 4 3 33 33 H 1.09004 * 109.50343 * 60.76835 * 6 5 4 34 34 H 1.09005 * 109.50248 * 180.88369 * 6 5 4 35 35 H 1.09005 * 109.52041 * 297.74835 * 7 6 5 36 36 H 0.97003 * 119.99457 * 354.77747 * 10 8 7 37 37 H 1.09004 * 109.46994 * 64.05519 * 12 11 10 38 38 H 1.09003 * 109.47188 * 184.05241 * 12 11 10 39 39 H 1.08993 * 109.46945 * 298.30918 * 13 12 11 40 40 H 1.09008 * 109.46924 * 58.30515 * 13 12 11 41 41 H 0.96702 * 114.00011 * 180.02562 * 14 13 12 42 42 H 1.08998 * 113.77449 * 336.34590 * 15 11 10 43 43 H 1.09005 * 113.77199 * 107.74908 * 15 11 10 44 44 H 0.97002 * 119.99578 * 180.02562 * 20 19 17 45 45 H 1.09004 * 113.77247 * 221.15519 * 25 16 15 46 46 H 1.09004 * 113.87286 * 89.77099 * 25 16 15 47 47 H 1.08998 * 109.49796 * 62.28855 * 26 7 6 48 48 H 1.08995 * 109.50365 * 182.40714 * 26 7 6 49 49 H 1.09000 * 109.45705 * 54.14136 * 27 4 3 50 50 H 1.08998 * 109.45119 * 294.17632 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1359 -0.5720 -1.2610 5 6 4.5842 -0.3735 -1.4015 6 6 5.0339 -0.8499 -2.7845 7 6 4.6847 -2.3319 -2.9471 8 6 5.0709 -2.7917 -4.3293 9 8 5.5754 -2.0116 -5.1089 10 7 4.8556 -4.0697 -4.6991 11 6 5.1241 -4.4887 -6.0769 12 6 4.2111 -3.8052 -7.0968 13 6 2.7492 -4.0605 -6.7247 14 8 1.8967 -3.3894 -7.6546 15 6 5.2171 -6.0151 -6.2535 16 7 6.3724 -5.7399 -7.1335 17 6 6.9740 -6.4108 -8.1645 18 1 7.8309 -5.9807 -8.6617 19 6 6.4825 -7.6439 -8.5707 20 7 5.4386 -8.1683 -7.9645 21 14 7.3028 -8.5588 -9.9776 22 1 8.3701 -9.4401 -9.4395 23 1 6.2922 -9.3827 -10.6883 24 1 7.8984 -7.5812 -10.9235 25 6 6.6154 -4.4511 -6.4568 26 6 3.1779 -2.5179 -2.7482 27 6 2.7820 -1.9933 -1.3663 28 1 -1.0498 0.0001 -0.0002 29 1 3.0097 -0.5970 0.8359 30 1 3.0089 1.0237 0.0997 31 1 5.1052 -0.9451 -0.6334 32 1 4.8185 0.6849 -1.2880 33 1 4.5235 -0.2694 -3.5531 34 1 6.1113 -0.7170 -2.8827 35 1 5.2253 -2.9172 -2.2032 36 1 4.5228 -4.7120 -4.0528 37 1 4.4043 -2.7324 -7.0958 38 1 4.4091 -4.2090 -8.0898 39 1 2.5483 -5.1313 -6.7550 40 1 2.5590 -3.6835 -5.7197 41 1 0.9531 -3.5074 -7.4791 42 1 5.4784 -6.5481 -5.3393 43 1 4.3625 -6.4504 -6.7717 44 1 5.0954 -9.0301 -8.2482 45 1 6.8752 -3.6398 -7.1368 46 1 7.2884 -4.5216 -5.6022 47 1 2.6384 -1.9637 -3.5162 48 1 2.9293 -3.5767 -2.8204 49 1 1.7074 -2.1111 -1.2271 50 1 3.3116 -2.5570 -0.5983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329717145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:38 Heat of formation + Delta-G solvation = -0.364157 kcal Electronic energy + Delta-G solvation = -29924.230365 eV Core-core repulsion = 25953.593935 eV Total energy + Delta-G solvation = -3970.636431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65902 -40.23593 -38.93138 -37.70644 -35.48154 -35.25617 -33.82598 -32.96972 -31.84523 -31.66985 -29.09636 -28.20891 -26.85251 -25.45155 -24.48866 -24.06181 -23.27185 -21.80848 -20.54124 -20.11947 -18.98304 -18.78248 -18.49676 -18.08751 -17.12905 -16.93817 -16.62502 -16.34405 -16.06299 -15.86933 -15.65232 -15.50146 -15.21322 -15.04636 -14.66924 -14.40604 -14.20596 -13.87191 -13.76110 -13.60588 -13.33569 -13.20405 -12.98561 -12.83710 -12.78371 -12.58015 -12.42763 -12.25255 -12.12114 -12.05445 -11.75903 -11.70236 -11.46605 -11.37251 -11.25467 -11.00682 -10.96896 -10.86755 -10.48450 -10.00435 -9.27662 -8.96851 -7.94018 -5.26856 1.45266 1.46797 1.55467 1.74726 1.80586 1.97856 2.17442 2.49572 3.11985 3.14938 3.25752 3.37868 3.56718 3.61720 3.66710 3.83465 3.91207 4.13132 4.22852 4.25651 4.31767 4.34860 4.41512 4.46752 4.48883 4.56978 4.62261 4.70989 4.71789 4.72283 4.80677 4.85229 4.93834 4.97888 5.03104 5.11701 5.12722 5.16986 5.19556 5.22663 5.24259 5.42088 5.46888 5.74412 5.89043 6.07607 6.13552 6.69661 6.76733 6.89799 6.90935 7.40011 7.55831 8.49364 9.22845 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.002549 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.433767 B =10983.934003 C =11499.567649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.210 4.210 3 C 0.162 3.838 4 N -0.554 5.554 5 C 0.064 3.936 6 C -0.093 4.093 7 C -0.098 4.098 8 C 0.516 3.484 9 O -0.574 6.574 10 N -0.705 5.705 11 C 0.157 3.843 12 C -0.088 4.088 13 C 0.093 3.907 14 O -0.593 6.593 15 C 0.173 3.827 16 N -0.633 5.633 17 C -0.237 4.237 18 H 0.078 0.922 19 C -0.059 4.059 20 N -0.946 5.946 21 Si 0.978 3.022 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.274 1.274 25 C 0.126 3.874 26 C -0.101 4.101 27 C 0.062 3.938 28 H 0.239 0.761 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.413 0.587 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.396 0.604 42 H 0.035 0.965 43 H 0.058 0.942 44 H 0.251 0.749 45 H 0.036 0.964 46 H 0.041 0.959 47 H 0.057 0.943 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.847 13.259 20.424 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.210 4.210 3 C 0.036 3.964 4 N -0.279 5.279 5 C -0.063 4.063 6 C -0.131 4.131 7 C -0.120 4.120 8 C 0.304 3.696 9 O -0.452 6.452 10 N -0.358 5.358 11 C 0.069 3.931 12 C -0.127 4.127 13 C 0.016 3.984 14 O -0.401 6.401 15 C 0.048 3.952 16 N -0.360 5.360 17 C -0.365 4.365 18 H 0.096 0.904 19 C -0.252 4.252 20 N -0.595 5.595 21 Si 0.806 3.194 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.199 1.199 25 C 0.000 4.000 26 C -0.139 4.139 27 C -0.066 4.066 28 H 0.256 0.744 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.135 0.865 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.246 0.754 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.110 0.890 49 H 0.094 0.906 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.079 13.987 18.997 25.278 hybrid contribution 0.208 -1.611 0.023 1.625 sum -8.871 12.376 19.020 24.364 Atomic orbital electron populations 1.25647 0.96870 1.00162 0.99162 1.23358 0.95121 1.01184 1.01365 1.19065 0.84645 1.01817 0.90898 1.61838 1.14847 1.16733 1.34490 1.22082 0.86010 1.02248 0.95954 1.21337 1.01142 0.93348 0.97304 1.21414 0.98903 0.98837 0.92804 1.21222 0.76860 0.81315 0.90204 1.90685 1.44337 1.54701 1.55520 1.45982 1.67551 1.11170 1.11118 1.22127 0.93916 0.95274 0.81763 1.21166 0.93701 0.99987 0.97830 1.21949 0.88961 0.95630 0.91881 1.86439 1.21863 1.75956 1.55883 1.22453 0.90924 0.89752 0.92120 1.46023 1.34603 1.20131 1.35247 1.19297 1.10033 1.00203 1.06983 0.90448 1.25545 0.99218 0.98134 1.02319 1.69932 1.26350 1.18826 1.44356 0.85100 0.77267 0.78280 0.78793 1.21115 1.21645 1.19873 1.22856 0.94784 0.87838 0.94515 1.21549 0.92446 1.02223 0.97681 1.22059 1.01151 0.87156 0.96193 0.74417 0.91086 0.87461 0.92785 0.89178 0.92709 0.91122 0.86476 0.74948 0.92207 0.93182 0.93485 0.91905 0.75396 0.94710 0.92363 0.93957 0.94568 0.94105 0.92391 0.89036 0.90593 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.78 19.25 74.32 1.43 -1.35 16 2 C -0.21 -3.31 12.34 31.12 0.38 -2.92 16 3 C 0.16 2.02 5.46 84.50 0.46 2.48 16 4 N -0.55 -8.39 4.63 -907.48 -4.21 -12.60 16 5 C 0.06 0.87 5.46 86.32 0.47 1.34 16 6 C -0.09 -1.81 4.68 30.64 0.14 -1.67 16 7 C -0.10 -1.84 2.59 -11.46 -0.03 -1.87 16 8 C 0.52 14.47 6.81 87.66 0.60 15.06 16 9 O -0.57 -21.33 14.37 -3.02 -0.04 -21.38 16 10 N -0.71 -19.65 4.41 -427.59 -1.89 -21.53 16 11 C 0.16 5.94 0.67 5.36 0.00 5.95 16 12 C -0.09 -3.48 4.81 30.59 0.15 -3.34 16 13 C 0.09 2.96 6.83 71.98 0.49 3.45 16 14 O -0.59 -18.51 13.66 -148.98 -2.03 -20.55 16 15 C 0.17 7.82 6.69 86.44 0.58 8.40 16 16 N -0.63 -33.18 3.55 -715.53 -2.54 -35.72 16 17 C -0.24 -13.60 10.70 84.03 0.90 -12.71 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 19 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 20 N -0.95 -55.54 11.39 21.65 0.25 -55.29 16 21 Si 0.98 46.04 29.55 68.60 2.03 48.06 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 25 C 0.13 5.66 7.55 86.48 0.65 6.32 16 26 C -0.10 -1.61 5.27 30.64 0.16 -1.45 16 27 C 0.06 0.86 5.30 86.32 0.46 1.32 16 28 H 0.24 1.70 7.80 -4.43 -0.03 1.67 16 29 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 30 H 0.11 1.08 7.99 -2.39 -0.02 1.06 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.09 1.06 8.01 -2.39 -0.02 1.04 16 33 H 0.05 1.36 8.04 -2.38 -0.02 1.34 16 34 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.41 8.77 8.36 -92.71 -0.78 8.00 16 37 H 0.06 2.51 7.09 -2.38 -0.02 2.50 16 38 H 0.05 2.36 8.02 -2.39 -0.02 2.34 16 39 H 0.05 1.51 7.53 -2.39 -0.02 1.50 16 40 H 0.06 1.67 7.63 -2.38 -0.02 1.65 16 41 H 0.40 7.74 9.12 -74.06 -0.68 7.07 16 42 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 2.91 6.55 -2.38 -0.02 2.90 16 44 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 45 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 46 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.09 1.14 7.80 -2.39 -0.02 1.13 16 49 H 0.08 1.12 7.11 -2.39 -0.02 1.11 16 50 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -76.11 403.21 -1.63 -77.74 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.51 Total: 25.11 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 7.32 Total: 16.16 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -8.38 Total: -125.14 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -2.08 Total: -41.93 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -76.11 -1.63 -77.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329717145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.373 kcal (2) G-P(sol) polarization free energy of solvation -76.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds