Wall clock time and date at job start Tue Mar 31 2020 19:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46726 * 2 1 4 4 N 1.46493 * 109.47480 * 120.00450 * 2 1 3 5 5 C 1.46506 * 119.99865 * 305.63130 * 4 2 1 6 6 C 1.52995 * 109.47408 * 89.99680 * 5 4 2 7 7 N 1.46496 * 109.47518 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00013 * 89.99968 * 7 6 5 9 9 C 1.36940 * 120.00198 * 270.00627 * 7 6 5 10 10 H 1.08000 * 119.99991 * 144.68644 * 9 7 6 11 11 C 1.38809 * 119.99780 * 324.68815 * 9 7 6 12 12 N 1.31616 * 120.00062 * 161.11050 * 11 9 7 13 13 Si 1.86802 * 120.00002 * 341.10604 * 11 9 7 14 14 H 1.48499 * 109.47080 * 91.45140 * 13 11 9 15 15 H 1.48499 * 109.46944 * 211.45366 * 13 11 9 16 16 H 1.48498 * 109.47248 * 331.44995 * 13 11 9 17 17 C 1.34772 * 120.00332 * 125.90251 * 4 2 1 18 18 O 1.21618 * 119.99953 * 187.59581 * 17 4 2 19 19 C 1.47420 * 119.99853 * 7.60333 * 17 4 2 20 20 C 1.36093 * 126.44515 * 188.92088 * 19 17 4 21 21 O 1.34263 * 106.94846 * 179.97438 * 20 19 17 22 22 C 1.34058 * 108.22304 * 359.97438 * 21 20 19 23 23 C 1.50697 * 125.37390 * 179.97438 * 22 21 20 24 24 C 1.53003 * 109.47017 * 270.02341 * 23 22 21 25 25 C 1.52998 * 117.49778 * 243.74842 * 24 23 22 26 26 C 1.53004 * 117.49707 * 175.09079 * 24 23 22 27 27 N 1.29930 * 109.24369 * 359.74125 * 22 21 20 28 28 H 1.09004 * 109.47009 * 299.99223 * 1 2 3 29 29 H 1.08995 * 109.47660 * 59.99874 * 1 2 3 30 30 H 1.09008 * 109.46689 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46688 * 240.00341 * 2 1 3 32 32 H 1.09005 * 109.46810 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47262 * 299.99829 * 3 2 1 34 34 H 1.08993 * 109.47215 * 60.00550 * 3 2 1 35 35 H 1.08993 * 109.47097 * 210.00115 * 5 4 2 36 36 H 1.09000 * 109.46687 * 329.99889 * 5 4 2 37 37 H 1.08998 * 109.47230 * 300.00762 * 6 5 4 38 38 H 1.09005 * 109.46912 * 59.99932 * 6 5 4 39 39 H 1.09003 * 109.47213 * 85.07898 * 8 7 6 40 40 H 1.08997 * 109.47274 * 205.08058 * 8 7 6 41 41 H 1.08999 * 109.47060 * 325.07650 * 8 7 6 42 42 H 0.96997 * 120.00167 * 179.97438 * 12 11 9 43 43 H 1.07995 * 126.53062 * 0.02562 * 20 19 17 44 44 H 1.08998 * 109.47511 * 30.02114 * 23 22 21 45 45 H 1.09005 * 109.47077 * 150.02330 * 23 22 21 46 46 H 1.09002 * 115.55174 * 29.41867 * 24 23 22 47 47 H 1.09004 * 117.50268 * 0.02562 * 25 24 23 48 48 H 1.09006 * 117.50164 * 145.01857 * 25 24 23 49 49 H 1.09006 * 117.49417 * 214.97911 * 26 24 23 50 50 H 1.08999 * 117.50092 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.5658 -0.2662 2.5232 6 6 0.3028 -1.0415 2.9035 7 7 -0.1502 -0.6166 4.2302 8 6 -1.0913 0.4985 4.3606 9 6 0.3062 -1.2617 5.3487 10 1 0.4810 -0.7068 6.2586 11 6 0.5441 -2.6288 5.3128 12 7 1.3131 -3.1870 6.2235 13 14 -0.2272 -3.6762 3.9722 14 1 0.7028 -3.7666 2.8180 15 1 -0.4945 -5.0381 4.5004 16 1 -1.5031 -3.0567 3.5324 17 6 2.8884 -1.7130 1.0759 18 8 3.1874 -2.3748 2.0514 19 6 3.4776 -2.0288 -0.2380 20 6 4.2285 -3.1214 -0.5457 21 8 4.5589 -3.0165 -1.8428 22 6 4.0225 -1.8852 -2.3219 23 6 4.1541 -1.3890 -3.7388 24 6 5.3946 -0.5010 -3.8550 25 6 5.1786 0.9710 -4.2120 26 6 5.7691 0.0107 -5.2475 27 7 3.3673 -1.2865 -1.3729 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.3486 -0.4654 3.2549 36 1 1.3459 0.8013 2.5078 37 1 -0.4800 -0.8423 2.1716 38 1 0.5227 -2.1090 2.9188 39 1 -2.1105 0.1289 4.2473 40 1 -0.9781 0.9565 5.3432 41 1 -0.8856 1.2397 3.5884 42 1 1.4791 -4.1424 6.1987 43 1 4.5053 -3.9209 0.1254 44 1 4.2514 -2.2392 -4.4139 45 1 3.2683 -0.8126 -4.0056 46 1 6.2088 -0.7386 -3.1703 47 1 4.1528 1.3069 -4.3637 48 1 5.8509 1.7019 -3.7625 49 1 6.8297 0.1100 -5.4787 50 1 5.1321 -0.2857 -6.0808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332734856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:32 Heat of formation + Delta-G solvation = 57.822822 kcal Electronic energy + Delta-G solvation = -30436.445511 eV Core-core repulsion = 26468.332257 eV Total energy + Delta-G solvation = -3968.113254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.59392 -39.60833 -38.01465 -36.67149 -35.64870 -34.84969 -32.07699 -31.68443 -31.29044 -28.97545 -28.04987 -27.01234 -26.10762 -24.52309 -22.91923 -22.79548 -22.10825 -21.47908 -21.02922 -20.66543 -19.14435 -17.51535 -16.96969 -16.82810 -16.61986 -16.12505 -15.67732 -15.21223 -14.79026 -14.63197 -14.45384 -14.05015 -13.83858 -13.70519 -13.56352 -13.19378 -13.03259 -12.88203 -12.75002 -12.46431 -12.20345 -12.00127 -11.93186 -11.87087 -11.79895 -11.53101 -11.38419 -11.30361 -11.06893 -10.89741 -10.82836 -10.46208 -10.42342 -10.39864 -9.94215 -9.67776 -9.48736 -9.27628 -9.11913 -8.45375 -8.25252 -6.74882 -5.85071 -3.27931 1.06847 1.90047 2.38237 3.19686 3.35066 3.47167 3.49465 3.55335 3.60353 3.67733 4.26466 4.43495 4.47926 4.61264 4.66569 4.73821 4.86457 5.08242 5.11001 5.14555 5.21949 5.24252 5.34372 5.41926 5.48415 5.51631 5.54077 5.55944 5.68779 5.70848 5.73791 5.75675 5.83829 5.91616 5.94682 6.14097 6.17580 6.25303 6.31660 6.44848 6.48355 6.62466 6.70183 6.73725 6.92287 7.09550 7.33878 7.81207 8.15681 8.47116 8.50407 9.07985 9.83941 10.20540 11.30610 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.003406 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.091856 B = 8219.137866 C = 9173.443909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 C -0.150 4.150 4 N -0.587 5.587 5 C 0.100 3.900 6 C 0.117 3.883 7 N -0.611 5.611 8 C 0.127 3.873 9 C -0.275 4.275 10 H 0.080 0.920 11 C 0.040 3.960 12 N -0.901 5.901 13 Si 0.884 3.116 14 H -0.276 1.276 15 H -0.306 1.306 16 H -0.276 1.276 17 C 0.585 3.415 18 O -0.515 6.515 19 C -0.060 4.060 20 C 0.008 3.992 21 O -0.196 6.196 22 C 0.193 3.807 23 C 0.009 3.991 24 C -0.155 4.155 25 C -0.171 4.171 26 C -0.174 4.174 27 N -0.448 5.448 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.006 0.994 40 H 0.046 0.954 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.231 0.769 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.392 7.011 -26.154 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 C -0.208 4.208 4 N -0.320 5.320 5 C -0.023 4.023 6 C -0.009 4.009 7 N -0.335 5.335 8 C -0.019 4.019 9 C -0.403 4.403 10 H 0.098 0.902 11 C -0.160 4.160 12 N -0.542 5.542 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.234 1.234 16 H -0.202 1.202 17 C 0.370 3.630 18 O -0.390 6.390 19 C -0.179 4.179 20 C -0.065 4.065 21 O -0.082 6.082 22 C -0.015 4.015 23 C -0.029 4.029 24 C -0.174 4.174 25 C -0.208 4.208 26 C -0.211 4.211 27 N -0.179 5.179 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.024 0.976 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.247 0.753 44 H 0.117 0.883 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.118 0.882 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.267 7.084 -25.585 27.277 hybrid contribution -0.035 -1.267 -0.417 1.334 sum 6.232 5.817 -26.002 27.363 Atomic orbital electron populations 1.22289 0.95646 1.02128 1.02110 1.22013 0.93876 0.94293 0.90130 1.22008 1.01340 0.95973 1.01451 1.47945 1.43362 1.32455 1.08219 1.22307 0.99874 0.98565 0.81589 1.21758 0.93320 0.98767 0.87077 1.44016 1.49498 1.37923 1.02111 1.21061 0.91818 0.89823 0.99155 1.18788 1.40048 0.90130 0.91337 0.90196 1.25340 0.97454 0.96686 0.96549 1.69808 1.36309 1.11541 1.36540 0.86854 0.80177 0.79060 0.82264 1.20415 1.23442 1.20176 1.16924 0.79599 0.81150 0.85281 1.90949 1.61490 1.48966 1.37574 1.22022 1.05509 0.95496 0.94908 1.25323 0.98230 1.01026 0.81946 1.84376 1.60025 1.39814 1.23996 1.26269 0.94008 0.83020 0.98217 1.19687 0.99096 0.99524 0.84614 1.22144 0.99042 0.96301 0.99952 1.23092 1.02711 0.92265 1.02735 1.23029 1.01993 1.03928 0.92191 1.70616 1.19692 1.28967 0.98583 0.91829 0.91946 0.92636 0.84421 0.92634 0.92114 0.92839 0.89385 0.91333 0.93811 0.92167 0.97583 0.93528 0.95667 0.92772 0.75265 0.88317 0.87303 0.87452 0.88202 0.88610 0.88506 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 7.92 37.16 0.29 -1.93 16 2 C 0.10 1.45 2.89 -67.93 -0.20 1.25 16 3 C -0.15 -1.86 9.26 37.16 0.34 -1.52 16 4 N -0.59 -10.85 2.40 -167.37 -0.40 -11.25 16 5 C 0.10 2.10 4.95 -4.04 -0.02 2.08 16 6 C 0.12 2.74 4.52 -4.05 -0.02 2.72 16 7 N -0.61 -15.44 2.54 -181.13 -0.46 -15.90 16 8 C 0.13 2.62 10.70 59.85 0.64 3.26 16 9 C -0.27 -8.14 9.95 -15.06 -0.15 -8.29 16 10 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 11 C 0.04 1.25 5.37 -17.43 -0.09 1.16 16 12 N -0.90 -29.27 13.97 55.49 0.78 -28.50 16 13 Si 0.88 24.52 24.86 -169.99 -4.23 20.29 16 14 H -0.28 -7.72 6.56 56.52 0.37 -7.35 16 15 H -0.31 -8.48 7.11 56.52 0.40 -8.08 16 16 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 17 C 0.59 11.61 7.64 -12.52 -0.10 11.52 16 18 O -0.51 -12.45 16.57 5.26 0.09 -12.36 16 19 C -0.06 -0.94 6.63 -83.02 -0.55 -1.49 16 20 C 0.01 0.11 11.96 29.96 0.36 0.46 16 21 O -0.20 -2.24 10.73 6.48 0.07 -2.17 16 22 C 0.19 2.05 7.51 -13.08 -0.10 1.95 16 23 C 0.01 0.06 6.12 -27.88 -0.17 -0.11 16 24 C -0.16 -1.00 5.72 -90.62 -0.52 -1.52 16 25 C -0.17 -1.00 10.18 -26.69 -0.27 -1.27 16 26 C -0.17 -0.84 10.25 -26.69 -0.27 -1.12 16 27 N -0.45 -5.89 7.84 -7.65 -0.06 -5.95 16 28 H 0.06 0.92 6.38 -51.93 -0.33 0.59 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.82 7.93 -51.92 -0.41 0.41 16 31 H 0.14 1.94 4.05 -62.49 -0.25 1.69 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.69 6.90 -51.93 -0.36 0.33 16 35 H 0.09 2.16 7.53 -51.93 -0.39 1.77 16 36 H 0.07 1.27 6.71 -51.93 -0.35 0.92 16 37 H 0.04 0.92 5.34 -51.93 -0.28 0.65 16 38 H 0.06 1.61 2.57 -51.93 -0.13 1.48 16 39 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.05 0.94 8.00 -51.93 -0.42 0.52 16 41 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 42 H 0.26 8.15 8.31 -40.82 -0.34 7.81 16 43 H 0.23 2.55 8.06 -52.49 -0.42 2.13 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.11 0.59 7.88 -51.93 -0.41 0.18 16 46 H 0.11 0.81 8.07 -51.93 -0.42 0.39 16 47 H 0.10 0.53 8.03 -51.93 -0.42 0.12 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -36.47 398.30 -7.01 -43.48 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.98 Total: -0.79 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -0.82 Total: 7.15 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.15 Total: -61.60 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.16 Total: -14.54 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -4.23 Total: 20.29 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.47 -7.01 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332734856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.307 kcal (2) G-P(sol) polarization free energy of solvation -36.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds