Wall clock time and date at job start Tue Mar 31 2020 19:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46726 * 2 1 4 4 N 1.46493 * 109.47480 * 120.00450 * 2 1 3 5 5 C 1.46506 * 119.99865 * 305.63130 * 4 2 1 6 6 C 1.52995 * 109.47408 * 89.99680 * 5 4 2 7 7 N 1.46496 * 109.47518 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00013 * 89.99968 * 7 6 5 9 9 C 1.36940 * 120.00198 * 270.00627 * 7 6 5 10 10 H 1.08000 * 119.99991 * 144.68644 * 9 7 6 11 11 C 1.38809 * 119.99780 * 324.68815 * 9 7 6 12 12 N 1.31616 * 120.00062 * 161.11050 * 11 9 7 13 13 Si 1.86802 * 120.00002 * 341.10604 * 11 9 7 14 14 H 1.48499 * 109.47080 * 91.45140 * 13 11 9 15 15 H 1.48499 * 109.46944 * 211.45366 * 13 11 9 16 16 H 1.48498 * 109.47248 * 331.44995 * 13 11 9 17 17 C 1.34772 * 120.00332 * 125.90251 * 4 2 1 18 18 O 1.21618 * 119.99953 * 187.59581 * 17 4 2 19 19 C 1.47420 * 119.99853 * 7.60333 * 17 4 2 20 20 C 1.36093 * 126.44515 * 188.92088 * 19 17 4 21 21 O 1.34263 * 106.94846 * 179.97438 * 20 19 17 22 22 C 1.34058 * 108.22304 * 359.97438 * 21 20 19 23 23 C 1.50697 * 125.37390 * 179.97438 * 22 21 20 24 24 C 1.53003 * 109.47017 * 270.02341 * 23 22 21 25 25 C 1.52998 * 117.49778 * 243.74842 * 24 23 22 26 26 C 1.53004 * 117.49707 * 175.09079 * 24 23 22 27 27 N 1.29930 * 109.24369 * 359.74125 * 22 21 20 28 28 H 1.09004 * 109.47009 * 299.99223 * 1 2 3 29 29 H 1.08995 * 109.47660 * 59.99874 * 1 2 3 30 30 H 1.09008 * 109.46689 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46688 * 240.00341 * 2 1 3 32 32 H 1.09005 * 109.46810 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47262 * 299.99829 * 3 2 1 34 34 H 1.08993 * 109.47215 * 60.00550 * 3 2 1 35 35 H 1.08993 * 109.47097 * 210.00115 * 5 4 2 36 36 H 1.09000 * 109.46687 * 329.99889 * 5 4 2 37 37 H 1.08998 * 109.47230 * 300.00762 * 6 5 4 38 38 H 1.09005 * 109.46912 * 59.99932 * 6 5 4 39 39 H 1.09003 * 109.47213 * 85.07898 * 8 7 6 40 40 H 1.08997 * 109.47274 * 205.08058 * 8 7 6 41 41 H 1.08999 * 109.47060 * 325.07650 * 8 7 6 42 42 H 0.96997 * 120.00167 * 179.97438 * 12 11 9 43 43 H 1.07995 * 126.53062 * 0.02562 * 20 19 17 44 44 H 1.08998 * 109.47511 * 30.02114 * 23 22 21 45 45 H 1.09005 * 109.47077 * 150.02330 * 23 22 21 46 46 H 1.09002 * 115.55174 * 29.41867 * 24 23 22 47 47 H 1.09004 * 117.50268 * 0.02562 * 25 24 23 48 48 H 1.09006 * 117.50164 * 145.01857 * 25 24 23 49 49 H 1.09006 * 117.49417 * 214.97911 * 26 24 23 50 50 H 1.08999 * 117.50092 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.5658 -0.2662 2.5232 6 6 0.3028 -1.0415 2.9035 7 7 -0.1502 -0.6166 4.2302 8 6 -1.0913 0.4985 4.3606 9 6 0.3062 -1.2617 5.3487 10 1 0.4810 -0.7068 6.2586 11 6 0.5441 -2.6288 5.3128 12 7 1.3131 -3.1870 6.2235 13 14 -0.2272 -3.6762 3.9722 14 1 0.7028 -3.7666 2.8180 15 1 -0.4945 -5.0381 4.5004 16 1 -1.5031 -3.0567 3.5324 17 6 2.8884 -1.7130 1.0759 18 8 3.1874 -2.3748 2.0514 19 6 3.4776 -2.0288 -0.2380 20 6 4.2285 -3.1214 -0.5457 21 8 4.5589 -3.0165 -1.8428 22 6 4.0225 -1.8852 -2.3219 23 6 4.1541 -1.3890 -3.7388 24 6 5.3946 -0.5010 -3.8550 25 6 5.1786 0.9710 -4.2120 26 6 5.7691 0.0107 -5.2475 27 7 3.3673 -1.2865 -1.3729 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.3486 -0.4654 3.2549 36 1 1.3459 0.8013 2.5078 37 1 -0.4800 -0.8423 2.1716 38 1 0.5227 -2.1090 2.9188 39 1 -2.1105 0.1289 4.2473 40 1 -0.9781 0.9565 5.3432 41 1 -0.8856 1.2397 3.5884 42 1 1.4791 -4.1424 6.1987 43 1 4.5053 -3.9209 0.1254 44 1 4.2514 -2.2392 -4.4139 45 1 3.2683 -0.8126 -4.0056 46 1 6.2088 -0.7386 -3.1703 47 1 4.1528 1.3069 -4.3637 48 1 5.8509 1.7019 -3.7625 49 1 6.8297 0.1100 -5.4787 50 1 5.1321 -0.2857 -6.0808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332734856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:31 Heat of formation + Delta-G solvation = 32.949401 kcal Electronic energy + Delta-G solvation = -30437.524104 eV Core-core repulsion = 26468.332257 eV Total energy + Delta-G solvation = -3969.191846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.58324 -41.08980 -38.47872 -38.31013 -37.33501 -35.94838 -33.83431 -32.89017 -32.80851 -30.54993 -28.92155 -28.15248 -27.99378 -26.10283 -24.32988 -23.21680 -23.05030 -22.71327 -22.65275 -21.62620 -20.28157 -18.86293 -18.76312 -17.92111 -17.87442 -17.56544 -16.95000 -16.65879 -16.24350 -15.74297 -15.64849 -15.16027 -15.13079 -14.98414 -14.82414 -14.60773 -14.50384 -14.45336 -14.04324 -13.75310 -13.52540 -13.42916 -13.12844 -12.92926 -12.83058 -12.80660 -12.61712 -12.56644 -12.29411 -12.28914 -12.23939 -12.12516 -11.80981 -11.47933 -11.29491 -11.26144 -10.88974 -10.71680 -10.67335 -10.19391 -9.81288 -8.82554 -8.23780 -5.61533 -0.01338 0.86232 1.25757 1.28121 1.39061 1.46514 1.85186 2.11214 2.37314 2.68098 2.94770 3.04741 3.40298 3.48587 3.71617 3.81592 3.93705 4.04548 4.07173 4.11678 4.18621 4.25278 4.39660 4.41941 4.43860 4.45114 4.57246 4.66111 4.70530 4.72343 4.75371 4.79394 4.83434 4.89501 4.89811 4.96922 4.99882 5.07406 5.11099 5.11800 5.24629 5.29789 5.34090 5.35048 5.41022 5.70786 5.88852 6.10332 6.25011 6.48298 6.91872 7.03215 7.58764 7.97764 8.95727 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.003406 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.091856 B = 8219.137866 C = 9173.443909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.093 3.907 3 C -0.142 4.142 4 N -0.586 5.586 5 C 0.116 3.884 6 C 0.118 3.882 7 N -0.625 5.625 8 C 0.124 3.876 9 C -0.258 4.258 10 H 0.050 0.950 11 C -0.019 4.019 12 N -0.948 5.948 13 Si 0.949 3.051 14 H -0.288 1.288 15 H -0.309 1.309 16 H -0.259 1.259 17 C 0.577 3.423 18 O -0.575 6.575 19 C -0.090 4.090 20 C 0.021 3.979 21 O -0.190 6.190 22 C 0.210 3.790 23 C 0.011 3.989 24 C -0.167 4.167 25 C -0.179 4.179 26 C -0.158 4.158 27 N -0.459 5.459 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.147 0.853 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.027 0.973 39 H 0.018 0.982 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.260 0.740 43 H 0.243 0.757 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 8.578 -30.680 32.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.008 4.008 3 C -0.200 4.200 4 N -0.317 5.317 5 C -0.009 4.009 6 C -0.008 4.008 7 N -0.351 5.351 8 C -0.020 4.020 9 C -0.388 4.388 10 H 0.068 0.932 11 C -0.215 4.215 12 N -0.592 5.592 13 Si 0.781 3.219 14 H -0.216 1.216 15 H -0.238 1.238 16 H -0.184 1.184 17 C 0.365 3.635 18 O -0.455 6.455 19 C -0.208 4.208 20 C -0.053 4.053 21 O -0.076 6.076 22 C 0.002 3.998 23 C -0.026 4.026 24 C -0.187 4.187 25 C -0.216 4.216 26 C -0.195 4.195 27 N -0.189 5.189 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.164 0.836 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.259 0.741 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.109 0.891 47 H 0.126 0.874 48 H 0.107 0.893 49 H 0.118 0.882 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.047 8.725 -30.170 31.809 hybrid contribution 0.406 -1.608 0.886 1.880 sum 5.452 7.117 -29.285 30.626 Atomic orbital electron populations 1.22281 0.94499 1.01556 1.03574 1.22374 0.94762 0.95193 0.88495 1.21949 1.00603 0.94603 1.02801 1.48081 1.42885 1.32291 1.08471 1.21865 0.97174 0.99621 0.82194 1.21770 0.95164 0.97052 0.86831 1.44186 1.50747 1.38677 1.01450 1.21231 0.91210 0.88967 1.00617 1.18744 1.38205 0.89978 0.91846 0.93201 1.25957 0.98455 0.98149 0.98939 1.69933 1.38603 1.11594 1.39114 0.85809 0.79492 0.77328 0.79318 1.21622 1.23799 1.18365 1.17489 0.79269 0.80564 0.86198 1.90907 1.63568 1.51105 1.39952 1.21537 1.07574 0.97434 0.94248 1.25545 0.96701 1.00408 0.82635 1.84429 1.59883 1.40224 1.23028 1.27197 0.91708 0.81831 0.99114 1.20007 0.99840 1.00613 0.82139 1.22069 0.98686 0.96765 1.01139 1.23169 1.03211 0.91868 1.03339 1.23114 1.02532 1.02131 0.91720 1.70504 1.21164 1.29134 0.98108 0.92451 0.88340 0.94187 0.83642 0.93775 0.88891 0.93248 0.94129 0.88579 0.90791 0.95528 0.96347 0.93625 0.91852 0.93102 0.74090 0.85833 0.85521 0.89085 0.87377 0.89296 0.88227 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 7.92 71.98 0.57 -3.26 16 2 C 0.09 2.49 2.89 44.99 0.13 2.62 16 3 C -0.14 -3.12 9.26 71.98 0.67 -2.45 16 4 N -0.59 -21.58 2.40 -801.70 -1.92 -23.50 16 5 C 0.12 4.88 4.95 86.38 0.43 5.31 16 6 C 0.12 5.44 4.52 86.38 0.39 5.83 16 7 N -0.63 -31.29 2.54 -726.96 -1.85 -33.14 16 8 C 0.12 4.82 10.70 127.77 1.37 6.18 16 9 C -0.26 -15.69 9.95 84.03 0.84 -14.85 16 10 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 11 C -0.02 -1.19 5.37 84.86 0.46 -0.73 16 12 N -0.95 -64.46 13.97 21.65 0.30 -64.16 16 13 Si 0.95 52.66 24.86 68.60 1.71 54.36 16 14 H -0.29 -16.37 6.56 99.48 0.65 -15.72 16 15 H -0.31 -17.02 7.11 99.48 0.71 -16.31 16 16 H -0.26 -13.42 7.11 99.48 0.71 -12.71 16 17 C 0.58 23.59 7.64 86.66 0.66 24.26 16 18 O -0.58 -29.54 16.57 -4.09 -0.07 -29.60 16 19 C -0.09 -2.81 6.63 40.41 0.27 -2.54 16 20 C 0.02 0.55 11.96 67.32 0.80 1.36 16 21 O -0.19 -3.99 10.73 0.26 0.00 -3.99 16 22 C 0.21 3.96 7.51 88.39 0.66 4.63 16 23 C 0.01 0.11 6.12 29.85 0.18 0.29 16 24 C -0.17 -1.70 5.72 -10.79 -0.06 -1.77 16 25 C -0.18 -1.62 10.18 30.62 0.31 -1.31 16 26 C -0.16 -1.02 10.25 30.62 0.31 -0.71 16 27 N -0.46 -11.30 7.84 -293.04 -2.30 -13.59 16 28 H 0.06 1.43 6.38 -2.39 -0.02 1.42 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.07 7.93 -2.38 -0.02 1.05 16 31 H 0.15 3.76 4.05 -23.24 -0.09 3.66 16 32 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.05 1.12 6.90 -2.39 -0.02 1.11 16 35 H 0.04 2.08 7.53 -2.39 -0.02 2.07 16 36 H 0.10 3.44 6.71 -2.39 -0.02 3.42 16 37 H 0.07 2.96 5.34 -2.39 -0.01 2.94 16 38 H 0.03 1.45 2.57 -2.38 -0.01 1.44 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.04 1.77 8.00 -2.39 -0.02 1.75 16 41 H 0.06 1.99 8.11 -2.39 -0.02 1.97 16 42 H 0.26 16.94 8.31 -92.71 -0.77 16.17 16 43 H 0.24 5.44 8.06 -2.91 -0.02 5.42 16 44 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.13 0.81 7.88 -2.38 -0.02 0.80 16 46 H 0.09 1.24 8.07 -2.39 -0.02 1.22 16 47 H 0.11 0.80 8.03 -2.38 -0.02 0.78 16 48 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 50 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -84.52 398.30 4.66 -79.86 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.80 Total: 10.93 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.99 Total: 22.84 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -5.77 Total: -134.40 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.07 Total: -33.59 kcal Atomic # 14 Polarization: 52.66 SS G_CDS: 1.71 Total: 54.36 kcal Total: -84.52 4.66 -79.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332734856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.808 kcal (2) G-P(sol) polarization free energy of solvation -84.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds