Wall clock time and date at job start Tue Mar 31 2020 19:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47532 * 2 1 4 4 N 1.46503 * 109.47402 * 180.02562 * 3 2 1 5 5 C 1.34779 * 119.99651 * 275.42891 * 4 3 2 6 6 O 1.21683 * 119.99902 * 185.59638 * 5 4 3 7 7 C 1.46724 * 120.00152 * 5.60243 * 5 4 3 8 8 O 1.35343 * 126.64332 * 354.71292 * 7 5 4 9 9 C 1.33666 * 107.68455 * 179.87887 * 8 7 5 10 10 C 1.50698 * 125.41986 * 180.15214 * 9 8 7 11 11 N 1.30614 * 109.15066 * 0.39498 * 9 8 7 12 12 C 1.33691 * 109.00070 * 359.75704 * 11 9 8 13 13 C 1.50694 * 126.27883 * 179.97438 * 12 11 9 14 14 C 1.46498 * 120.00052 * 95.42994 * 4 3 2 15 15 C 1.53078 * 109.45162 * 119.78941 * 14 4 3 16 16 C 1.53193 * 109.29332 * 181.24165 * 15 14 4 17 17 N 1.46921 * 108.89291 * 305.57889 * 16 15 14 18 18 C 1.36940 * 120.63134 * 233.51863 * 17 16 15 19 19 H 1.08000 * 120.00613 * 144.69868 * 18 17 16 20 20 C 1.38819 * 119.99614 * 324.69441 * 18 17 16 21 21 N 1.31615 * 120.00043 * 4.39701 * 20 18 17 22 22 Si 1.86801 * 119.99650 * 184.39113 * 20 18 17 23 23 H 1.48501 * 109.47314 * 60.00606 * 22 20 18 24 24 H 1.48510 * 109.46806 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47255 * 299.99876 * 22 20 18 26 26 C 1.46930 * 118.74148 * 53.53767 * 17 16 15 27 27 C 1.53037 * 109.45939 * 239.99788 * 14 4 3 28 28 H 1.09001 * 109.46994 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46965 * 300.00115 * 1 2 3 30 30 H 1.08997 * 109.46630 * 60.00005 * 1 2 3 31 31 H 1.09007 * 109.47187 * 239.99758 * 2 1 3 32 32 H 1.09008 * 109.46993 * 120.00323 * 2 1 3 33 33 H 1.08998 * 109.47089 * 59.99961 * 3 2 1 34 34 H 1.09008 * 109.47245 * 300.00169 * 3 2 1 35 35 H 1.09006 * 109.46943 * 270.30389 * 10 9 8 36 36 H 1.08990 * 109.47531 * 30.31132 * 10 9 8 37 37 H 1.09001 * 109.46567 * 150.31435 * 10 9 8 38 38 H 1.09005 * 109.47115 * 270.02452 * 13 12 11 39 39 H 1.09004 * 109.47264 * 30.01577 * 13 12 11 40 40 H 1.08994 * 109.47641 * 150.02129 * 13 12 11 41 41 H 1.08994 * 109.46290 * 359.97438 * 14 4 3 42 42 H 1.08999 * 109.38808 * 61.36811 * 15 14 4 43 43 H 1.09000 * 109.62251 * 301.26041 * 15 14 4 44 44 H 1.09005 * 109.58129 * 185.72028 * 16 15 14 45 45 H 1.08990 * 109.58729 * 65.44052 * 16 15 14 46 46 H 0.97003 * 119.99589 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.58323 * 66.17630 * 26 17 16 48 48 H 1.08999 * 109.58711 * 186.45710 * 26 17 16 49 49 H 1.09002 * 109.49790 * 58.66689 * 27 14 4 50 50 H 1.09000 * 109.50015 * 298.57119 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1794 1.3317 1.1611 6 8 5.3919 1.4338 1.1729 7 6 3.4516 1.0881 2.4116 8 8 2.1079 1.0515 2.5701 9 6 1.8579 0.8000 3.8589 10 6 0.4881 0.6713 4.4738 11 7 2.9897 0.6887 4.5012 12 6 3.9977 0.8608 3.6400 13 6 5.4679 0.8128 3.9670 14 6 4.2371 1.5626 -1.2639 15 6 5.1131 2.8174 -1.2281 16 6 5.8530 2.9565 -2.5623 17 7 6.5869 1.7124 -2.8311 18 6 7.9284 1.7389 -3.1048 19 1 8.5664 0.9397 -2.7577 20 6 8.4683 2.7933 -3.8287 21 7 7.7082 3.8096 -4.1773 22 14 10.2737 2.7695 -4.3078 23 1 10.5463 1.5784 -5.1516 24 1 10.5997 4.0017 -5.0699 25 1 11.1102 2.7101 -3.0824 26 6 5.8541 0.4392 -2.8011 27 6 5.1168 0.3262 -1.4631 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 0.1486 1.6501 4.8128 36 1 -0.2084 0.2821 3.7314 37 1 0.5336 -0.0113 5.3224 38 1 5.8129 1.8109 4.2369 39 1 5.6322 0.1332 4.8032 40 1 6.0222 0.4596 3.0975 41 1 3.5284 1.6406 -2.0883 42 1 5.8370 2.7304 -0.4179 43 1 4.4881 3.6956 -1.0654 44 1 6.5539 3.7894 -2.5062 45 1 5.1344 3.1368 -3.3616 46 1 8.0856 4.5465 -4.6828 47 1 5.1337 0.4130 -3.6187 48 1 6.5554 -0.3886 -2.9054 49 1 4.4928 -0.5676 -1.4660 50 1 5.8422 0.2614 -0.6522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479991258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:49 Heat of formation + Delta-G solvation = 6.270017 kcal Electronic energy + Delta-G solvation = -30941.993343 eV Core-core repulsion = 26971.644591 eV Total energy + Delta-G solvation = -3970.348751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.57944 -40.01901 -37.10162 -36.29461 -35.14081 -33.48529 -32.89451 -32.00103 -30.11061 -29.57210 -29.44440 -27.53366 -26.22224 -24.87034 -22.92926 -22.19049 -22.01334 -21.68206 -21.35947 -19.87223 -19.12093 -17.34506 -17.12088 -16.72549 -16.07809 -15.80242 -14.97740 -14.79172 -14.66499 -14.34278 -14.24448 -13.72385 -13.67007 -13.45257 -13.30537 -13.25681 -13.09631 -12.94506 -12.92512 -12.66121 -12.46842 -12.23933 -12.17603 -11.87566 -11.52019 -11.40023 -11.15879 -11.12477 -10.88608 -10.82214 -10.73193 -10.71395 -10.34518 -10.10501 -9.96903 -9.72363 -9.63146 -9.35778 -8.90854 -8.45050 -8.26969 -6.48999 -5.72215 -3.24470 0.76689 2.26620 2.29736 3.06514 3.19664 3.43255 3.47293 3.48996 3.70357 4.42369 4.53810 4.61407 4.74583 4.85673 4.93893 4.96631 5.06271 5.13836 5.24162 5.37363 5.40969 5.44644 5.47094 5.54267 5.59231 5.64185 5.66157 5.71577 5.80491 5.81912 5.86172 5.90427 5.92005 6.14068 6.18266 6.26756 6.36495 6.40197 6.57587 6.64746 6.79610 6.88615 7.05103 7.08765 7.35843 7.50927 7.62291 7.84986 7.88394 8.21412 8.60221 9.31250 9.90186 10.49624 11.33827 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.003221 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.829484 B = 8690.223403 C = 9649.373234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.106 3.894 4 N -0.600 5.600 5 C 0.602 3.398 6 O -0.494 6.494 7 C -0.108 4.108 8 O -0.180 6.180 9 C 0.203 3.797 10 C -0.060 4.060 11 N -0.490 5.490 12 C 0.075 3.925 13 C -0.079 4.079 14 C 0.160 3.840 15 C -0.157 4.157 16 C 0.172 3.828 17 N -0.591 5.591 18 C -0.249 4.249 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.907 5.907 22 Si 0.904 3.096 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.152 3.848 27 C -0.146 4.146 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.103 0.897 45 H 0.012 0.988 46 H 0.254 0.746 47 H 0.016 0.984 48 H 0.055 0.945 49 H 0.045 0.955 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.292 -6.290 14.354 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.017 4.017 4 N -0.331 5.331 5 C 0.388 3.612 6 O -0.370 6.370 7 C -0.163 4.163 8 O -0.067 6.067 9 C -0.003 4.003 10 C -0.117 4.117 11 N -0.220 5.220 12 C -0.049 4.049 13 C -0.136 4.136 14 C 0.059 3.941 15 C -0.197 4.197 16 C 0.045 3.955 17 N -0.314 5.314 18 C -0.379 4.379 19 H 0.080 0.920 20 C -0.190 4.190 21 N -0.551 5.551 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.024 3.976 27 C -0.186 4.186 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.121 0.879 45 H 0.030 0.970 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.586 -6.174 14.804 23.802 hybrid contribution 0.529 0.155 -0.932 1.083 sum -17.056 -6.020 13.872 22.794 Atomic orbital electron populations 1.21665 0.95132 1.01728 1.01812 1.21937 0.96123 0.97114 1.02498 1.21820 0.79536 0.97203 1.03169 1.48252 1.06542 1.71440 1.06839 1.16449 0.86135 0.77960 0.80673 1.90888 1.11784 1.49707 1.84623 1.23203 0.79808 1.14929 0.98383 1.84685 1.24532 1.67901 1.29602 1.26519 0.97923 0.96995 0.78834 1.20328 0.85561 1.04852 1.00960 1.70314 0.97485 1.20476 1.33769 1.22039 0.97478 0.97865 0.87550 1.20366 0.86232 1.03391 1.03655 1.21247 0.93224 0.97493 0.82091 1.22744 0.99069 0.94027 1.03903 1.20940 0.94252 0.91345 0.88923 1.43976 1.05622 1.00374 1.81431 1.19116 0.83615 1.07951 1.27226 0.91974 1.25300 0.98174 0.97956 0.97613 1.69873 1.34841 1.08950 1.41465 0.86352 0.84944 0.76908 0.78463 1.20910 1.21633 1.20911 1.20848 0.94149 0.90376 0.92198 1.22443 0.99089 0.95091 1.01969 0.92619 0.92733 0.92502 0.91498 0.92108 0.90120 0.89880 0.88650 0.89112 0.87963 0.89996 0.90753 0.88599 0.90284 0.90042 0.93817 0.87905 0.96998 0.93550 0.96649 0.92601 0.93589 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.14 -1.42 5.69 -26.73 -0.15 -1.57 16 3 C 0.11 1.23 4.97 -4.04 -0.02 1.21 16 4 N -0.60 -9.17 2.43 -167.56 -0.41 -9.58 16 5 C 0.60 10.05 7.01 -12.83 -0.09 9.96 16 6 O -0.49 -9.70 11.13 5.20 0.06 -9.64 16 7 C -0.11 -1.58 6.40 -36.84 -0.24 -1.82 16 8 O -0.18 -2.15 6.13 4.42 0.03 -2.12 16 9 C 0.20 2.15 8.32 -12.80 -0.11 2.05 16 10 C -0.06 -0.31 10.51 36.00 0.38 0.07 16 11 N -0.49 -6.46 11.26 -7.07 -0.08 -6.54 16 12 C 0.07 1.07 7.16 -82.47 -0.59 0.48 16 13 C -0.08 -1.03 9.82 36.00 0.35 -0.68 16 14 C 0.16 2.83 2.50 -67.87 -0.17 2.66 16 15 C -0.16 -3.27 5.28 -26.59 -0.14 -3.41 16 16 C 0.17 4.23 5.26 -3.71 -0.02 4.21 16 17 N -0.59 -15.28 3.00 -172.32 -0.52 -15.80 16 18 C -0.25 -7.04 9.55 -15.06 -0.14 -7.18 16 19 H 0.06 1.74 7.83 -52.49 -0.41 1.32 16 20 C 0.01 0.22 5.32 -17.43 -0.09 0.13 16 21 N -0.91 -26.48 10.60 55.49 0.59 -25.89 16 22 Si 0.90 22.12 29.56 -169.99 -5.02 17.10 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 26 C 0.15 3.28 6.52 -3.71 -0.02 3.25 16 27 C -0.15 -2.75 5.27 -26.61 -0.14 -2.89 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.70 6.60 -51.92 -0.34 0.36 16 33 H 0.08 0.91 5.69 -51.93 -0.30 0.61 16 34 H 0.08 0.88 7.81 -51.92 -0.41 0.48 16 35 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.37 6.58 -51.93 -0.34 1.03 16 41 H 0.08 1.32 7.72 -51.93 -0.40 0.92 16 42 H 0.08 1.89 6.03 -51.93 -0.31 1.58 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 2.88 5.90 -51.93 -0.31 2.57 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 49 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.08 1.66 6.40 -51.93 -0.33 1.33 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -32.57 387.59 -8.53 -41.10 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.19 Total: -0.20 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.82 Total: 5.73 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.42 Total: -57.80 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.57 -8.53 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479991258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.370 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds