Wall clock time and date at job start Tue Mar 31 2020 19:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47532 * 2 1 4 4 N 1.46503 * 109.47402 * 180.02562 * 3 2 1 5 5 C 1.34779 * 119.99651 * 275.42891 * 4 3 2 6 6 O 1.21683 * 119.99902 * 185.59638 * 5 4 3 7 7 C 1.46724 * 120.00152 * 5.60243 * 5 4 3 8 8 O 1.35343 * 126.64332 * 354.71292 * 7 5 4 9 9 C 1.33666 * 107.68455 * 179.87887 * 8 7 5 10 10 C 1.50698 * 125.41986 * 180.15214 * 9 8 7 11 11 N 1.30614 * 109.15066 * 0.39498 * 9 8 7 12 12 C 1.33691 * 109.00070 * 359.75704 * 11 9 8 13 13 C 1.50694 * 126.27883 * 179.97438 * 12 11 9 14 14 C 1.46498 * 120.00052 * 95.42994 * 4 3 2 15 15 C 1.53078 * 109.45162 * 119.78941 * 14 4 3 16 16 C 1.53193 * 109.29332 * 181.24165 * 15 14 4 17 17 N 1.46921 * 108.89291 * 305.57889 * 16 15 14 18 18 C 1.36940 * 120.63134 * 233.51863 * 17 16 15 19 19 H 1.08000 * 120.00613 * 144.69868 * 18 17 16 20 20 C 1.38819 * 119.99614 * 324.69441 * 18 17 16 21 21 N 1.31615 * 120.00043 * 4.39701 * 20 18 17 22 22 Si 1.86801 * 119.99650 * 184.39113 * 20 18 17 23 23 H 1.48501 * 109.47314 * 60.00606 * 22 20 18 24 24 H 1.48510 * 109.46806 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47255 * 299.99876 * 22 20 18 26 26 C 1.46930 * 118.74148 * 53.53767 * 17 16 15 27 27 C 1.53037 * 109.45939 * 239.99788 * 14 4 3 28 28 H 1.09001 * 109.46994 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46965 * 300.00115 * 1 2 3 30 30 H 1.08997 * 109.46630 * 60.00005 * 1 2 3 31 31 H 1.09007 * 109.47187 * 239.99758 * 2 1 3 32 32 H 1.09008 * 109.46993 * 120.00323 * 2 1 3 33 33 H 1.08998 * 109.47089 * 59.99961 * 3 2 1 34 34 H 1.09008 * 109.47245 * 300.00169 * 3 2 1 35 35 H 1.09006 * 109.46943 * 270.30389 * 10 9 8 36 36 H 1.08990 * 109.47531 * 30.31132 * 10 9 8 37 37 H 1.09001 * 109.46567 * 150.31435 * 10 9 8 38 38 H 1.09005 * 109.47115 * 270.02452 * 13 12 11 39 39 H 1.09004 * 109.47264 * 30.01577 * 13 12 11 40 40 H 1.08994 * 109.47641 * 150.02129 * 13 12 11 41 41 H 1.08994 * 109.46290 * 359.97438 * 14 4 3 42 42 H 1.08999 * 109.38808 * 61.36811 * 15 14 4 43 43 H 1.09000 * 109.62251 * 301.26041 * 15 14 4 44 44 H 1.09005 * 109.58129 * 185.72028 * 16 15 14 45 45 H 1.08990 * 109.58729 * 65.44052 * 16 15 14 46 46 H 0.97003 * 119.99589 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.58323 * 66.17630 * 26 17 16 48 48 H 1.08999 * 109.58711 * 186.45710 * 26 17 16 49 49 H 1.09002 * 109.49790 * 58.66689 * 27 14 4 50 50 H 1.09000 * 109.50015 * 298.57119 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1794 1.3317 1.1611 6 8 5.3919 1.4338 1.1729 7 6 3.4516 1.0881 2.4116 8 8 2.1079 1.0515 2.5701 9 6 1.8579 0.8000 3.8589 10 6 0.4881 0.6713 4.4738 11 7 2.9897 0.6887 4.5012 12 6 3.9977 0.8608 3.6400 13 6 5.4679 0.8128 3.9670 14 6 4.2371 1.5626 -1.2639 15 6 5.1131 2.8174 -1.2281 16 6 5.8530 2.9565 -2.5623 17 7 6.5869 1.7124 -2.8311 18 6 7.9284 1.7389 -3.1048 19 1 8.5664 0.9397 -2.7577 20 6 8.4683 2.7933 -3.8287 21 7 7.7082 3.8096 -4.1773 22 14 10.2737 2.7695 -4.3078 23 1 10.5463 1.5784 -5.1516 24 1 10.5997 4.0017 -5.0699 25 1 11.1102 2.7101 -3.0824 26 6 5.8541 0.4392 -2.8011 27 6 5.1168 0.3262 -1.4631 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 0.1486 1.6501 4.8128 36 1 -0.2084 0.2821 3.7314 37 1 0.5336 -0.0113 5.3224 38 1 5.8129 1.8109 4.2369 39 1 5.6322 0.1332 4.8032 40 1 6.0222 0.4596 3.0975 41 1 3.5284 1.6406 -2.0883 42 1 5.8370 2.7304 -0.4179 43 1 4.4881 3.6956 -1.0654 44 1 6.5539 3.7894 -2.5062 45 1 5.1344 3.1368 -3.3616 46 1 8.0856 4.5465 -4.6828 47 1 5.1337 0.4130 -3.6187 48 1 6.5554 -0.3886 -2.9054 49 1 4.4928 -0.5676 -1.4660 50 1 5.8422 0.2614 -0.6522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479991258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:47 Heat of formation + Delta-G solvation = -14.564965 kcal Electronic energy + Delta-G solvation = -30942.896815 eV Core-core repulsion = 26971.644591 eV Total energy + Delta-G solvation = -3971.252224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -44.53518 -41.33774 -38.71829 -37.52760 -36.16582 -34.99669 -33.72610 -33.49780 -31.79977 -31.31859 -30.28190 -28.65198 -27.41049 -26.44458 -24.41171 -23.85179 -22.95603 -22.77155 -22.44754 -21.26038 -20.60520 -18.94397 -18.26300 -18.01339 -17.31139 -16.99383 -16.79129 -16.01816 -15.64040 -15.60149 -15.41527 -15.29423 -15.13965 -14.79364 -14.55389 -14.28697 -14.19216 -14.05011 -13.96663 -13.82565 -13.48426 -13.36387 -13.18391 -13.03845 -12.91716 -12.77601 -12.65889 -12.60141 -12.34953 -12.19594 -12.05505 -11.98046 -11.84524 -11.81558 -11.62548 -11.43094 -11.29597 -10.84624 -10.51662 -9.99638 -9.58222 -8.55679 -7.86130 -5.41933 -0.25906 1.28628 1.32522 1.45660 1.48040 1.54559 1.90753 2.01667 2.49813 2.89297 3.27951 3.40185 3.63187 3.70253 3.87847 3.96758 3.99701 4.16471 4.25978 4.29673 4.31356 4.40931 4.50125 4.52465 4.59163 4.62126 4.65326 4.68157 4.68918 4.79725 4.82289 4.85617 4.87435 4.95612 4.97337 5.05496 5.10845 5.15172 5.19292 5.24115 5.33355 5.40148 5.45438 5.56803 5.60900 5.66114 5.82576 6.25331 6.46670 6.53689 6.96647 7.18228 7.85838 8.39212 9.17280 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.003221 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.829484 B = 8690.223403 C = 9649.373234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.597 5.597 5 C 0.598 3.402 6 O -0.535 6.535 7 C -0.131 4.131 8 O -0.174 6.174 9 C 0.223 3.777 10 C -0.061 4.061 11 N -0.517 5.517 12 C 0.070 3.930 13 C -0.077 4.077 14 C 0.171 3.829 15 C -0.142 4.142 16 C 0.181 3.819 17 N -0.612 5.612 18 C -0.267 4.267 19 H 0.058 0.942 20 C -0.043 4.043 21 N -0.931 5.931 22 Si 0.969 3.031 23 H -0.274 1.274 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.150 3.850 27 C -0.131 4.131 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.003 0.997 46 H 0.251 0.749 47 H 0.028 0.972 48 H 0.052 0.948 49 H 0.074 0.926 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.221 -7.267 15.324 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C -0.019 4.019 4 N -0.327 5.327 5 C 0.386 3.614 6 O -0.414 6.414 7 C -0.186 4.186 8 O -0.062 6.062 9 C 0.018 3.982 10 C -0.118 4.118 11 N -0.247 5.247 12 C -0.054 4.054 13 C -0.134 4.134 14 C 0.068 3.932 15 C -0.182 4.182 16 C 0.055 3.945 17 N -0.335 5.335 18 C -0.397 4.397 19 H 0.075 0.925 20 C -0.239 4.239 21 N -0.577 5.577 22 Si 0.796 3.204 23 H -0.200 1.200 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.024 3.976 27 C -0.171 4.171 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.021 0.979 46 H 0.061 0.939 47 H 0.046 0.954 48 H 0.071 0.929 49 H 0.092 0.908 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.564 -7.179 15.793 26.904 hybrid contribution 1.327 0.434 -1.117 1.788 sum -19.237 -6.745 14.675 25.118 Atomic orbital electron populations 1.21638 0.92729 1.02594 1.02833 1.21863 0.98077 0.95593 1.01456 1.22096 0.76950 0.98619 1.04275 1.48183 1.08044 1.70955 1.05492 1.16701 0.85863 0.77269 0.81581 1.90871 1.13614 1.51532 1.85433 1.22663 0.80933 1.17484 0.97494 1.84675 1.22980 1.68160 1.30368 1.27754 0.99249 0.93106 0.78055 1.20745 0.82683 1.06590 1.01775 1.70371 0.98026 1.22368 1.33966 1.22256 0.98151 0.97118 0.87895 1.20323 0.85912 1.03806 1.03360 1.20952 0.93181 0.95078 0.83950 1.22458 0.98875 0.96534 1.00374 1.20651 0.93284 0.90043 0.90553 1.44216 1.05399 1.01963 1.81939 1.19384 0.85088 1.07945 1.27321 0.92456 1.26024 1.02359 0.97647 0.97831 1.70061 1.36399 1.09274 1.41969 0.85337 0.80048 0.76961 0.78038 1.19994 1.21538 1.20641 1.20968 0.94220 0.88415 0.94044 1.22227 0.98779 0.96964 0.99140 0.91851 0.91423 0.91810 0.92301 0.93420 0.89376 0.88365 0.86453 0.86521 0.86661 0.89807 0.89101 0.90504 0.88301 0.92843 0.92482 0.91759 0.97862 0.93941 0.95433 0.92896 0.90756 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.13 -2.35 5.69 30.59 0.17 -2.18 16 3 C 0.10 2.13 4.97 86.38 0.43 2.56 16 4 N -0.60 -17.73 2.43 -802.26 -1.95 -19.68 16 5 C 0.60 20.17 7.01 86.46 0.61 20.77 16 6 O -0.54 -22.03 11.13 -4.29 -0.05 -22.07 16 7 C -0.13 -3.76 6.40 24.05 0.15 -3.61 16 8 O -0.17 -3.77 6.13 -7.11 -0.04 -3.82 16 9 C 0.22 4.13 8.32 88.29 0.73 4.86 16 10 C -0.06 -0.37 10.51 71.24 0.75 0.38 16 11 N -0.52 -12.83 11.26 -291.07 -3.28 -16.10 16 12 C 0.07 1.98 7.16 41.83 0.30 2.27 16 13 C -0.08 -2.05 9.82 71.23 0.70 -1.35 16 14 C 0.17 5.93 2.50 45.03 0.11 6.04 16 15 C -0.14 -6.05 5.28 30.68 0.16 -5.89 16 16 C 0.18 9.23 5.26 86.36 0.45 9.69 16 17 N -0.61 -32.51 3.00 -699.10 -2.10 -34.60 16 18 C -0.27 -15.53 9.55 84.03 0.80 -14.72 16 19 H 0.06 3.31 7.83 -2.91 -0.02 3.28 16 20 C -0.04 -2.49 5.32 84.86 0.45 -2.04 16 21 N -0.93 -56.03 10.60 21.65 0.23 -55.80 16 22 Si 0.97 46.42 29.56 68.60 2.03 48.45 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 C 0.15 6.50 6.52 86.36 0.56 7.06 16 27 C -0.13 -4.92 5.27 30.67 0.16 -4.76 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.05 0.99 6.60 -2.38 -0.02 0.97 16 33 H 0.09 1.74 5.69 -2.39 -0.01 1.73 16 34 H 0.10 1.78 7.81 -2.38 -0.02 1.76 16 35 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.35 6.58 -2.39 -0.02 2.33 16 41 H 0.10 3.09 7.72 -2.39 -0.02 3.07 16 42 H 0.05 2.60 6.03 -2.39 -0.01 2.58 16 43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.06 3.78 5.90 -2.38 -0.01 3.76 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 49 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 50 H 0.05 2.22 6.40 -2.39 -0.02 2.21 16 Total: -1.00 -74.23 387.59 3.04 -71.20 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.93 Total: 14.25 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 7.27 Total: 18.18 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -7.10 Total: -126.19 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.09 Total: -25.89 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -74.23 3.04 -71.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479991258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.631 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds